No. words: 1192; after pruning: 1152


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.8 (1,1:549)  495  2.36 0.18 0.18  USDA018F_B12_BM140362Sn27P035E12P017H081F1_094.ab1        1   550 (39)  C USDA018R_B12_BM140362Sn27P035E12P017H081R1_094.ab1   (53)   550     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C USDA018R_B12_BM140362Sn27P035E12P017H081R1_094.ab1   603 
  549    USDA018F_B12_BM140362Sn27P035E12P017H081F1_094.ab1   495 
  560  C USDA018R_B12_BM140362Sn27P035E12P017H081R1_094.ab1    44 
  592    USDA018F_B12_BM140362Sn27P035E12P017H081F1_094.ab1   538 
Contig length: old 642, new 643

Contig length: old 643, new 643
New start: 0 
S Change at: 62; seg lengths: entry 1, contig 1