No. words: 1139; after pruning: 1099


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.4 (1,1:522)  463  2.68 0.00 0.38  USDA018F_C12_BM140362Sn28P035E12P017H081F1_092.ab1        1   523 (17)  C USDA018R_C12_BM140362Sn28P035E12P017H081R1_092.ab1   (78)   521     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C USDA018R_C12_BM140362Sn28P035E12P017H081R1_092.ab1   599 
  587    USDA018F_C12_BM140362Sn28P035E12P017H081F1_092.ab1   510 
Contig length: old 616, new 617

Contig length: old 617, new 617
New start: 0 
S Change at: 57; seg lengths: entry 1, contig 1