No. words: 1015; after pruning: 975


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)    1   -5.2 -5.2 (1,1:404)  282  9.68 0.00 0.00  USDA018F_F12_BM140362Sn31P035E12P017H081F1_086.ab1        2   404 (18)  C USDA018R_F12_BM140362Sn31P035E12P017H081R1_086.ab1   (189)   404     2 *
  Worst pair: offset 0 
LLR breakdown: discreps: -12.1 (<20 part: -12.1 (#=39), >20:0.0 (#=0); in HQ: -12.1, out HQ 0.0), match: 8.1  trail: -0.8  lead: -0.5  total: -5.3  282  9.68 0.00 0.00  USDA018F_F12_BM140362Sn31P035E12P017H081F1_086.ab1        2   404 (18)  C USDA018R_F12_BM140362Sn31P035E12P017H081R1_086.ab1   (189)   404     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.2       0        1

Gap   # merges  # failures
 size
 1       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    USDA018R_F12_BM140362Sn31P035E12P017H081R1_086.ab1     1 
Contig length: old 593, new 593

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    USDA018F_F12_BM140362Sn31P035E12P017H081F1_086.ab1     1 
Contig length: old 422, new 422