No. words: 1167; after pruning: 1141


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:524)  478  1.90 0.00 0.38  USDA018F_C10_BM140362Ta13P035E12P017H081F1_076.ab1        1   526 (34)  C USDA018R_C10_BM140362Ta13P035E12P017H081R1_076.ab1   (83)   524     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C USDA018R_C10_BM140362Ta13P035E12P017H081R1_076.ab1   607 
  592    USDA018F_C10_BM140362Ta13P035E12P017H081F1_076.ab1   509 
Contig length: old 642, new 643

Contig length: old 643, new 642
New start: 0 
D Change at: 596; seg lengths: entry 0, contig 1