No. words: 1193; after pruning: 1167


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:550)  518  1.09 0.00 0.18  USDA018F_D10_BM140362Ta14P035E12P017H081F1_074.ab1        1   551 (38)  C USDA018R_D10_BM140362Ta14P035E12P017H081R1_074.ab1   (54)   550     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C USDA018R_D10_BM140362Ta14P035E12P017H081R1_074.ab1   604 
  579    USDA018F_D10_BM140362Ta14P035E12P017H081F1_074.ab1   525 
  583  C USDA018R_D10_BM140362Ta14P035E12P017H081R1_074.ab1    22 
  591    USDA018F_D10_BM140362Ta14P035E12P017H081F1_074.ab1   537 
Contig length: old 642, new 643

Contig length: old 643, new 643
New start: 0