No. words: 1190; after pruning: 1164


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.4 (1,1:550)  523  0.73 0.00 0.18  USDA018F_E10_BM140362Ta15P035E12P017H081F1_072.ab1        1   550 (37)  C USDA018R_E10_BM140362Ta15P035E12P017H081R1_072.ab1   (53)   550     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C USDA018R_E10_BM140362Ta15P035E12P017H081R1_072.ab1   603 
  588    USDA018F_E10_BM140362Ta15P035E12P017H081F1_072.ab1   535 
Contig length: old 639, new 640

Contig length: old 640, new 640
New start: 0