No. words: 1196; after pruning: 1170


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.0 (1,1:552)  506  1.45 0.18 0.18  USDA018F_H10_BM140362Ta18P035E12P017H081F1_066.ab1        1   550 (38)  C USDA018R_H10_BM140362Ta18P035E12P017H081R1_066.ab1   (55)   553     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C USDA018R_H10_BM140362Ta18P035E12P017H081R1_066.ab1   608 
  591    USDA018F_H10_BM140362Ta18P035E12P017H081F1_066.ab1   535 
Contig length: old 643, new 644

Contig length: old 644, new 644
New start: 0