No. words: 1195; after pruning: 1169


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.0 (1,1:553)  499  2.00 0.18 0.18  USDA018F_C11_BM140362Ta21P035E12P017H081F1_091.ab1        1   551 (39)  C USDA018R_C11_BM140362Ta21P035E12P017H081R1_091.ab1   (51)   554     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C USDA018R_C11_BM140362Ta21P035E12P017H081R1_091.ab1   605 
  588    USDA018F_C11_BM140362Ta21P035E12P017H081F1_091.ab1   536 
Contig length: old 641, new 642

Contig length: old 642, new 642
New start: 0