No. words: 1192; after pruning: 1166


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.2 (1,1:553)  523  0.90 0.00 0.18  USDA018F_D11_BM140362Ta22P035E12P017H081F1_089.ab1        1   553 (34)  C USDA018R_D11_BM140362Ta22P035E12P017H081R1_089.ab1   (52)   553     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C USDA018R_D11_BM140362Ta22P035E12P017H081R1_089.ab1   605 
  599    USDA018F_D11_BM140362Ta22P035E12P017H081F1_089.ab1   548 
Contig length: old 638, new 638

Contig length: old 638, new 638
New start: 0