No. words: 1383; after pruning: 1357


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:899)  458  0.41 0.00 0.21  USDA003F_C11_BM585780As01P004B05B11F1_082.ab1      278   760 (0)  C USDA003R_C11_BM585780As01P004B05B11R1_082.ab1   (0)   623   142 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1    USDA003F_C11_BM585780As01P004B05B11F1_082.ab1     1 
  488  C USDA003R_C11_BM585780As01P004B05B11R1_082.ab1   413 
  496    USDA003F_C11_BM585780As01P004B05B11F1_082.ab1   496 
  528  C USDA003R_C11_BM585780As01P004B05B11R1_082.ab1   373 
  532    USDA003F_C11_BM585780As01P004B05B11F1_082.ab1   532 
  548  C USDA003R_C11_BM585780As01P004B05B11R1_082.ab1   353 
  552    USDA003F_C11_BM585780As01P004B05B11F1_082.ab1   552 
  584  C USDA003R_C11_BM585780As01P004B05B11R1_082.ab1   317 
  600    USDA003F_C11_BM585780As01P004B05B11F1_082.ab1   600 
  604  C USDA003R_C11_BM585780As01P004B05B11R1_082.ab1   297 
  612    USDA003F_C11_BM585780As01P004B05B11F1_082.ab1   612 
  616  C USDA003R_C11_BM585780As01P004B05B11R1_082.ab1   285 
  624    USDA003F_C11_BM585780As01P004B05B11F1_082.ab1   624 
  628  C USDA003R_C11_BM585780As01P004B05B11R1_082.ab1   273 
  632    USDA003F_C11_BM585780As01P004B05B11F1_082.ab1   632 
  636  C USDA003R_C11_BM585780As01P004B05B11R1_082.ab1   265 
  648    USDA003F_C11_BM585780As01P004B05B11F1_082.ab1   648 
  660  C USDA003R_C11_BM585780As01P004B05B11R1_082.ab1   241 
  672    USDA003F_C11_BM585780As01P004B05B11F1_082.ab1   672 
  676  C USDA003R_C11_BM585780As01P004B05B11R1_082.ab1   225 
  692    USDA003F_C11_BM585780As01P004B05B11F1_082.ab1   692 
  704  C USDA003R_C11_BM585780As01P004B05B11R1_082.ab1   197 
  736    USDA003F_C11_BM585780As01P004B05B11F1_082.ab1   737 
  740  C USDA003R_C11_BM585780As01P004B05B11R1_082.ab1   161 
Contig length: old 900, new 900

Contig length: old 900, new 900
New start: 0