No. words: 1615; after pruning: 1589


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:981)  611  0.16 0.00 0.00  USDA003F_D11_BM585780As02P004B05B11F1_090.ab1      153   785 (0)  C USDA003R_D11_BM585780As02P004B05B11R1_090.ab1   (0)   830   198 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1    USDA003F_D11_BM585780As02P004B05B11F1_090.ab1     1 
  436  C USDA003R_D11_BM585780As02P004B05B11R1_090.ab1   547 
  444    USDA003F_D11_BM585780As02P004B05B11F1_090.ab1   444 
  452  C USDA003R_D11_BM585780As02P004B05B11R1_090.ab1   531 
  460    USDA003F_D11_BM585780As02P004B05B11F1_090.ab1   460 
  472  C USDA003R_D11_BM585780As02P004B05B11R1_090.ab1   511 
  484    USDA003F_D11_BM585780As02P004B05B11F1_090.ab1   484 
  504  C USDA003R_D11_BM585780As02P004B05B11R1_090.ab1   479 
  508    USDA003F_D11_BM585780As02P004B05B11F1_090.ab1   508 
  512  C USDA003R_D11_BM585780As02P004B05B11R1_090.ab1   471 
  532    USDA003F_D11_BM585780As02P004B05B11F1_090.ab1   532 
  536  C USDA003R_D11_BM585780As02P004B05B11R1_090.ab1   447 
  556    USDA003F_D11_BM585780As02P004B05B11F1_090.ab1   556 
  564  C USDA003R_D11_BM585780As02P004B05B11R1_090.ab1   419 
  568    USDA003F_D11_BM585780As02P004B05B11F1_090.ab1   568 
  572  C USDA003R_D11_BM585780As02P004B05B11R1_090.ab1   411 
Contig length: old 982, new 982

Contig length: old 982, new 982
New start: 0