No. words: 1749; after pruning: 1709


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 16.6 (1,1:858)  804  0.12 0.12 0.12  USDA003F_G11_BM585780Ld01P004B05B11F1_084.ab1       12   854 (46)  C USDA003R_G11_BM585780Ld01P004B05B11R1_084.ab1   (0)   849     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  414 nodes

 209 str. conn. components

Path
    1    USDA003F_G11_BM585780Ld01P004B05B11F1_084.ab1     1 
   15  C USDA003R_G11_BM585780Ld01P004B05B11R1_084.ab1   846 
   19    USDA003F_G11_BM585780Ld01P004B05B11F1_084.ab1    19 
  375  C USDA003R_G11_BM585780Ld01P004B05B11R1_084.ab1   486 
  383    USDA003F_G11_BM585780Ld01P004B05B11F1_084.ab1   383 
  407  C USDA003R_G11_BM585780Ld01P004B05B11R1_084.ab1   454 
  411    USDA003F_G11_BM585780Ld01P004B05B11F1_084.ab1   411 
  475  C USDA003R_G11_BM585780Ld01P004B05B11R1_084.ab1   386 
  487    USDA003F_G11_BM585780Ld01P004B05B11F1_084.ab1   487 
  499  C USDA003R_G11_BM585780Ld01P004B05B11R1_084.ab1   362 
  519    USDA003F_G11_BM585780Ld01P004B05B11F1_084.ab1   519 
  523  C USDA003R_G11_BM585780Ld01P004B05B11R1_084.ab1   338 
  567    USDA003F_G11_BM585780Ld01P004B05B11F1_084.ab1   567 
  571  C USDA003R_G11_BM585780Ld01P004B05B11R1_084.ab1   290 
  850    USDA003F_G11_BM585780Ld01P004B05B11F1_084.ab1   850 
Contig length: old 900, new 900

Contig length: old 900, new 900
New start: 0