No. words: 1523; after pruning: 1497


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:822)  676  0.00 0.00 0.00  USDA003F_A12_BM585780Ld03P004B05B11F1_085.ab1       16   715 (0)  C USDA003R_A12_BM585780Ld03P004B05B11R1_085.ab1   (0)   808   109 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1    USDA003F_A12_BM585780Ld03P004B05B11F1_085.ab1     1 
  363  C USDA003R_A12_BM585780Ld03P004B05B11R1_085.ab1   461 
  371    USDA003F_A12_BM585780Ld03P004B05B11F1_085.ab1   371 
  395  C USDA003R_A12_BM585780Ld03P004B05B11R1_085.ab1   429 
  411    USDA003F_A12_BM585780Ld03P004B05B11F1_085.ab1   411 
  423  C USDA003R_A12_BM585780Ld03P004B05B11R1_085.ab1   401 
  427    USDA003F_A12_BM585780Ld03P004B05B11F1_085.ab1   427 
  451  C USDA003R_A12_BM585780Ld03P004B05B11R1_085.ab1   373 
  503    USDA003F_A12_BM585780Ld03P004B05B11F1_085.ab1   503 
  511  C USDA003R_A12_BM585780Ld03P004B05B11R1_085.ab1   313 
  567    USDA003F_A12_BM585780Ld03P004B05B11F1_085.ab1   567 
  571  C USDA003R_A12_BM585780Ld03P004B05B11R1_085.ab1   253 
  583    USDA003F_A12_BM585780Ld03P004B05B11F1_085.ab1   583 
  587  C USDA003R_A12_BM585780Ld03P004B05B11R1_085.ab1   237 
  683    USDA003F_A12_BM585780Ld03P004B05B11F1_085.ab1   683 
  687  C USDA003R_A12_BM585780Ld03P004B05B11R1_085.ab1   137 
Contig length: old 823, new 823

Contig length: old 823, new 823
New start: 0