No. words: 1752; after pruning: 1698


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 17.5 (1,1:858)  796  0.24 0.12 0.00  USDA003F_B12_BM585780Ld04P004B05B11F1_093.ab1        1   833 (1)  C USDA003R_B12_BM585780Ld04P004B05B11R1_093.ab1   (58)   860    27 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  408 nodes

 206 str. conn. components

Path
    1  C USDA003R_B12_BM585780Ld04P004B05B11R1_093.ab1   918 
   71    USDA003F_B12_BM585780Ld04P004B05B11F1_093.ab1    12 
   75  C USDA003R_B12_BM585780Ld04P004B05B11R1_093.ab1   844 
   79    USDA003F_B12_BM585780Ld04P004B05B11F1_093.ab1    20 
  416  C USDA003R_B12_BM585780Ld04P004B05B11R1_093.ab1   503 
  420    USDA003F_B12_BM585780Ld04P004B05B11F1_093.ab1   361 
  428  C USDA003R_B12_BM585780Ld04P004B05B11R1_093.ab1   491 
  432    USDA003F_B12_BM585780Ld04P004B05B11F1_093.ab1   373 
  488  C USDA003R_B12_BM585780Ld04P004B05B11R1_093.ab1   431 
  508    USDA003F_B12_BM585780Ld04P004B05B11F1_093.ab1   449 
  524  C USDA003R_B12_BM585780Ld04P004B05B11R1_093.ab1   395 
Contig length: old 918, new 918

Contig length: old 918, new 918
New start: 0