No. words: 1748; after pruning: 1708


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 16.9 (1,1:855)  781  0.60 0.12 0.12  USDA003F_C12_BM585780Ld05P004B05B11F1_086.ab1        1   835 (3)  C USDA003R_C12_BM585780Ld05P004B05B11R1_086.ab1   (54)   856    22 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  404 nodes

 204 str. conn. components

Path
    1  C USDA003R_C12_BM585780Ld05P004B05B11R1_086.ab1   910 
   65    USDA003F_C12_BM585780Ld05P004B05B11F1_086.ab1    10 
  408  C USDA003R_C12_BM585780Ld05P004B05B11R1_086.ab1   503 
  412    USDA003F_C12_BM585780Ld05P004B05B11F1_086.ab1   357 
  420  C USDA003R_C12_BM585780Ld05P004B05B11R1_086.ab1   491 
  428    USDA003F_C12_BM585780Ld05P004B05B11F1_086.ab1   373 
  552  C USDA003R_C12_BM585780Ld05P004B05B11R1_086.ab1   359 
  560    USDA003F_C12_BM585780Ld05P004B05B11F1_086.ab1   505 
  564  C USDA003R_C12_BM585780Ld05P004B05B11R1_086.ab1   347 
  640    USDA003F_C12_BM585780Ld05P004B05B11F1_086.ab1   585 
  644  C USDA003R_C12_BM585780Ld05P004B05B11R1_086.ab1   267 
Contig length: old 910, new 910

Contig length: old 910, new 911
New start: 0 
I Change at: 885; seg lengths: entry 1, contig 0