No. words: 1712; after pruning: 1686


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.3 (1,1:860)  794  0.00 0.12 0.00  USDA003F_D12_BM585780Ld06P004B05B11F1_094.ab1        1   827 (0)  C USDA003R_D12_BM585780Ld06P004B05B11R1_094.ab1   (23)   862    35 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  412 nodes

 208 str. conn. components

Path
    1  C USDA003R_D12_BM585780Ld06P004B05B11R1_094.ab1   885 
   27    USDA003F_D12_BM585780Ld06P004B05B11F1_094.ab1     4 
   42  C USDA003R_D12_BM585780Ld06P004B05B11R1_094.ab1   843 
   46    USDA003F_D12_BM585780Ld06P004B05B11F1_094.ab1    23 
  382  C USDA003R_D12_BM585780Ld06P004B05B11R1_094.ab1   503 
  386    USDA003F_D12_BM585780Ld06P004B05B11F1_094.ab1   363 
  526  C USDA003R_D12_BM585780Ld06P004B05B11R1_094.ab1   359 
  534    USDA003F_D12_BM585780Ld06P004B05B11F1_094.ab1   511 
  538  C USDA003R_D12_BM585780Ld06P004B05B11R1_094.ab1   347 
  610    USDA003F_D12_BM585780Ld06P004B05B11F1_094.ab1   587 
  614  C USDA003R_D12_BM585780Ld06P004B05B11R1_094.ab1   271 
Contig length: old 885, new 884

Contig length: old 884, new 885
New start: 0 
I Change at: 35; seg lengths: entry 1, contig 0