No. words: 1584; after pruning: 1558


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 15.9 (1,1:862)  695  0.00 0.00 0.00  USDA003F_E12_BM585780Ld07P004B05B11F1_087.ab1       18   736 (0)  C USDA003R_E12_BM585780Ld07P004B05B11R1_087.ab1   (2)   846   128 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  362 nodes

 183 str. conn. components

Path
    1    USDA003F_E12_BM585780Ld07P004B05B11F1_087.ab1     1 
  357  C USDA003R_E12_BM585780Ld07P004B05B11R1_087.ab1   507 
  365    USDA003F_E12_BM585780Ld07P004B05B11F1_087.ab1   365 
  377  C USDA003R_E12_BM585780Ld07P004B05B11R1_087.ab1   487 
  393    USDA003F_E12_BM585780Ld07P004B05B11F1_087.ab1   393 
  421  C USDA003R_E12_BM585780Ld07P004B05B11R1_087.ab1   443 
  433    USDA003F_E12_BM585780Ld07P004B05B11F1_087.ab1   433 
  441  C USDA003R_E12_BM585780Ld07P004B05B11R1_087.ab1   423 
  449    USDA003F_E12_BM585780Ld07P004B05B11F1_087.ab1   449 
  457  C USDA003R_E12_BM585780Ld07P004B05B11R1_087.ab1   407 
  461    USDA003F_E12_BM585780Ld07P004B05B11F1_087.ab1   461 
  469  C USDA003R_E12_BM585780Ld07P004B05B11R1_087.ab1   395 
  605    USDA003F_E12_BM585780Ld07P004B05B11F1_087.ab1   605 
  609  C USDA003R_E12_BM585780Ld07P004B05B11R1_087.ab1   255 
Contig length: old 863, new 863

Contig length: old 863, new 863
New start: 0