No. words: 1112; after pruning: 1072


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.7 (1,1:516)  471  1.35 0.19 0.19  USDA021F_E02_BM585780Ta13P043F04P004B111F1_008.ab1        1   517 (41)  C USDA021R_E02_BM585780Ta13P043F04P004B111R1_008.ab1   (37)   517     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C USDA021R_E02_BM585780Ta13P043F04P004B111R1_008.ab1   554 
   60    USDA021F_E02_BM585780Ta13P043F04P004B111F1_008.ab1    22 
   79  C USDA021R_E02_BM585780Ta13P043F04P004B111R1_008.ab1   476 
  537    USDA021F_E02_BM585780Ta13P043F04P004B111F1_008.ab1   500 
  541  C USDA021R_E02_BM585780Ta13P043F04P004B111R1_008.ab1    14 
  551    USDA021F_E02_BM585780Ta13P043F04P004B111F1_008.ab1   514 
Contig length: old 595, new 595

Contig length: old 595, new 595
New start: 0