No. words: 1144; after pruning: 1118


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 3.4 (1,1:521)  480  1.15 0.00 0.19  USDA021F_G02_BM585780Ta15P043F04P004B111F1_004.ab1        1   521 (52)  C USDA021R_G02_BM585780Ta15P043F04P004B111R1_004.ab1   (50)   521     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C USDA021R_G02_BM585780Ta15P043F04P004B111R1_004.ab1   571 
   74    USDA021F_G02_BM585780Ta15P043F04P004B111F1_004.ab1    24 
   90  C USDA021R_G02_BM585780Ta15P043F04P004B111R1_004.ab1   482 
  550    USDA021F_G02_BM585780Ta15P043F04P004B111F1_004.ab1   501 
  554  C USDA021R_G02_BM585780Ta15P043F04P004B111R1_004.ab1    18 
  565    USDA021F_G02_BM585780Ta15P043F04P004B111F1_004.ab1   516 
Contig length: old 622, new 622

Contig length: old 622, new 622
New start: 0 
S Change at: 58; seg lengths: entry 1, contig 1