No. words: 1130; after pruning: 1090


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -1.2 -1.2 (1,1:521)  464  2.30 0.00 0.19  USDA021F_H02_BM585780Ta16P043F04P004B111F1_002.ab1        1   522 (39)  C USDA021R_H02_BM585780Ta16P043F04P004B111R1_002.ab1   (48)   521     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C USDA021R_H02_BM585780Ta16P043F04P004B111R1_002.ab1   569 
   72    USDA021F_H02_BM585780Ta16P043F04P004B111F1_002.ab1    24 
   91  C USDA021R_H02_BM585780Ta16P043F04P004B111R1_002.ab1   479 
  538    USDA021F_H02_BM585780Ta16P043F04P004B111F1_002.ab1   491 
  542  C USDA021R_H02_BM585780Ta16P043F04P004B111R1_002.ab1    28 
  546    USDA021F_H02_BM585780Ta16P043F04P004B111F1_002.ab1   499 
  554  C USDA021R_H02_BM585780Ta16P043F04P004B111R1_002.ab1    16 
  564    USDA021F_H02_BM585780Ta16P043F04P004B111F1_002.ab1   517 
Contig length: old 608, new 608

Contig length: old 608, new 608
New start: 0 
S Change at: 56; seg lengths: entry 1, contig 1