No. words: 1150; after pruning: 1124


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.0 (1,1:537)  493  0.93 0.19 0.37  USDA021F_B03_BM585780Ta18P043F04P004B111F1_029.ab1        1   539 (34)  C USDA021R_B03_BM585780Ta18P043F04P004B111R1_029.ab1   (39)   538     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C USDA021R_B03_BM585780Ta18P043F04P004B111R1_029.ab1   577 
   53    USDA021F_B03_BM585780Ta18P043F04P004B111F1_029.ab1    13 
   62  C USDA021R_B03_BM585780Ta18P043F04P004B111R1_029.ab1   516 
   78    USDA021F_B03_BM585780Ta18P043F04P004B111F1_029.ab1    38 
   90  C USDA021R_B03_BM585780Ta18P043F04P004B111R1_029.ab1   488 
  423    USDA021F_B03_BM585780Ta18P043F04P004B111F1_029.ab1   384 
  427  C USDA021R_B03_BM585780Ta18P043F04P004B111R1_029.ab1   151 
  443    USDA021F_B03_BM585780Ta18P043F04P004B111F1_029.ab1   404 
  447  C USDA021R_B03_BM585780Ta18P043F04P004B111R1_029.ab1   131 
  531    USDA021F_B03_BM585780Ta18P043F04P004B111F1_029.ab1   492 
  535  C USDA021R_B03_BM585780Ta18P043F04P004B111R1_029.ab1    43 
  539    USDA021F_B03_BM585780Ta18P043F04P004B111F1_029.ab1   500 
  543  C USDA021R_B03_BM585780Ta18P043F04P004B111R1_029.ab1    35 
  551    USDA021F_B03_BM585780Ta18P043F04P004B111F1_029.ab1   512 
  555  C USDA021R_B03_BM585780Ta18P043F04P004B111R1_029.ab1    23 
  563    USDA021F_B03_BM585780Ta18P043F04P004B111F1_029.ab1   524 
Contig length: old 612, new 612

Contig length: old 612, new 612
New start: 0