No. words: 1126; after pruning: 1086


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.8 (1,1:519)  469  1.92 0.00 0.19  USDA021F_C03_BM585780Ta19P043F04P004B111F1_027.ab1        1   520 (41)  C USDA021R_C03_BM585780Ta19P043F04P004B111R1_027.ab1   (46)   519     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C USDA021R_C03_BM585780Ta19P043F04P004B111R1_027.ab1   565 
   70    USDA021F_C03_BM585780Ta19P043F04P004B111F1_027.ab1    24 
   89  C USDA021R_C03_BM585780Ta19P043F04P004B111R1_027.ab1   477 
  548    USDA021F_C03_BM585780Ta19P043F04P004B111F1_027.ab1   503 
  552  C USDA021R_C03_BM585780Ta19P043F04P004B111R1_027.ab1    14 
  562    USDA021F_C03_BM585780Ta19P043F04P004B111F1_027.ab1   517 
Contig length: old 606, new 606

Contig length: old 606, new 606
New start: 0 
S Change at: 54; seg lengths: entry 1, contig 1