No. words: 1140; after pruning: 1114


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -2.5 -2.5 (1,1:529)  462  2.45 0.19 0.19  USDA021F_D03_BM585780Ta20P043F04P004B111F1_025.ab1        1   530 (42)  C USDA021R_D03_BM585780Ta20P043F04P004B111R1_025.ab1   (38)   530     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.5       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C USDA021R_D03_BM585780Ta20P043F04P004B111R1_025.ab1   568 
   52    USDA021F_D03_BM585780Ta20P043F04P004B111F1_025.ab1    13 
   61  C USDA021R_D03_BM585780Ta20P043F04P004B111R1_025.ab1   508 
   73    USDA021F_D03_BM585780Ta20P043F04P004B111F1_025.ab1    34 
   88  C USDA021R_D03_BM585780Ta20P043F04P004B111R1_025.ab1   481 
  539    USDA021F_D03_BM585780Ta20P043F04P004B111F1_025.ab1   501 
  543  C USDA021R_D03_BM585780Ta20P043F04P004B111R1_025.ab1    26 
  565    USDA021F_D03_BM585780Ta20P043F04P004B111F1_025.ab1   527 
Contig length: old 610, new 610

Contig length: old 610, new 610
New start: 0