No. words: 1123; after pruning: 1097


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 2.1 (1,1:513)  456  2.15 0.00 0.20  USDA021F_E03_BM585780Ta21P043F04P004B111F1_023.ab1        1   511 (51)  C USDA021R_E03_BM585780Ta21P043F04P004B111R1_023.ab1   (48)   513     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C USDA021R_E03_BM585780Ta21P043F04P004B111R1_023.ab1   561 
   72    USDA021F_E03_BM585780Ta21P043F04P004B111F1_023.ab1    24 
   88  C USDA021R_E03_BM585780Ta21P043F04P004B111R1_023.ab1   474 
  550    USDA021F_E03_BM585780Ta21P043F04P004B111F1_023.ab1   503 
Contig length: old 609, new 609

Contig length: old 609, new 609
New start: 0 
S Change at: 56; seg lengths: entry 1, contig 1