No. words: 1118; after pruning: 1092


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 5.5 (1,1:520)  474  1.54 0.00 0.19  USDA021F_F03_BM585780Ta22P043F04P004B111F1_021.ab1        1   520 (41)  C USDA021R_F03_BM585780Ta22P043F04P004B111R1_021.ab1   (37)   520     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C USDA021R_F03_BM585780Ta22P043F04P004B111R1_021.ab1   557 
   60    USDA021F_F03_BM585780Ta22P043F04P004B111F1_021.ab1    23 
   76  C USDA021R_F03_BM585780Ta22P043F04P004B111R1_021.ab1   482 
  465    USDA021F_F03_BM585780Ta22P043F04P004B111F1_021.ab1   429 
  469  C USDA021R_F03_BM585780Ta22P043F04P004B111R1_021.ab1    89 
  519    USDA021F_F03_BM585780Ta22P043F04P004B111F1_021.ab1   483 
  523  C USDA021R_F03_BM585780Ta22P043F04P004B111R1_021.ab1    35 
  535    USDA021F_F03_BM585780Ta22P043F04P004B111F1_021.ab1   499 
  539  C USDA021R_F03_BM585780Ta22P043F04P004B111R1_021.ab1    19 
  551    USDA021F_F03_BM585780Ta22P043F04P004B111F1_021.ab1   515 
Contig length: old 597, new 597

Contig length: old 597, new 597
New start: 0 
S Change at: 44; seg lengths: entry 1, contig 1
S Change at: 508; seg lengths: entry 4, contig 4