No. words: 1139; after pruning: 1113


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 5.3 (1,1:530)  485  0.94 0.38 0.19  USDA021F_G03_BM585780Ta23P043F04P004B111F1_019.ab1        1   530 (40)  C USDA021R_G03_BM585780Ta23P043F04P004B111R1_019.ab1   (37)   532     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C USDA021R_G03_BM585780Ta23P043F04P004B111R1_019.ab1   569 
   51    USDA021F_G03_BM585780Ta23P043F04P004B111F1_019.ab1    12 
   60  C USDA021R_G03_BM585780Ta23P043F04P004B111R1_019.ab1   510 
   72    USDA021F_G03_BM585780Ta23P043F04P004B111F1_019.ab1    33 
   88  C USDA021R_G03_BM585780Ta23P043F04P004B111R1_019.ab1   482 
  339    USDA021F_G03_BM585780Ta23P043F04P004B111F1_019.ab1   301 
  343  C USDA021R_G03_BM585780Ta23P043F04P004B111R1_019.ab1   227 
  441    USDA021F_G03_BM585780Ta23P043F04P004B111F1_019.ab1   403 
  445  C USDA021R_G03_BM585780Ta23P043F04P004B111R1_019.ab1   125 
  529    USDA021F_G03_BM585780Ta23P043F04P004B111F1_019.ab1   491 
  533  C USDA021R_G03_BM585780Ta23P043F04P004B111R1_019.ab1    37 
  537    USDA021F_G03_BM585780Ta23P043F04P004B111F1_019.ab1   499 
  541  C USDA021R_G03_BM585780Ta23P043F04P004B111R1_019.ab1    29 
  549    USDA021F_G03_BM585780Ta23P043F04P004B111F1_019.ab1   511 
  553  C USDA021R_G03_BM585780Ta23P043F04P004B111R1_019.ab1    17 
  563    USDA021F_G03_BM585780Ta23P043F04P004B111F1_019.ab1   525 
Contig length: old 608, new 608

Contig length: old 608, new 608
New start: 0