No. words: 1130; after pruning: 1104


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -2.5 -2.5 (1,1:520)  400  5.96 0.19 0.19  USDA021F_A01_BM585780Td01P043F04P004B111F1_015.ab1        1   520 (41)  C USDA021R_A01_BM585780Td01P043F04P004B111R1_015.ab1   (48)   521     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.5       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C USDA021R_A01_BM585780Td01P043F04P004B111R1_015.ab1   569 
   80    USDA021F_A01_BM585780Td01P043F04P004B111F1_015.ab1    31 
   84  C USDA021R_A01_BM585780Td01P043F04P004B111R1_015.ab1   486 
  548    USDA021F_A01_BM585780Td01P043F04P004B111F1_015.ab1   500 
  552  C USDA021R_A01_BM585780Td01P043F04P004B111R1_015.ab1    18 
  563    USDA021F_A01_BM585780Td01P043F04P004B111F1_015.ab1   515 
Contig length: old 609, new 609

Contig length: old 609, new 609
New start: 0 
S Change at: 56; seg lengths: entry 1, contig 1