No. words: 1089; after pruning: 1049


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 4.7 (1,1:512)  470  1.37 0.00 0.20  USDA021F_C01_BM585780Td03P043F04P004B111F1_011.ab1        1   510 (52)  C USDA021R_C01_BM585780Td03P043F04P004B111R1_011.ab1   (15)   512     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C USDA021R_C01_BM585780Td03P043F04P004B111R1_011.ab1   527 
   39    USDA021F_C01_BM585780Td03P043F04P004B111F1_011.ab1    24 
   58  C USDA021R_C01_BM585780Td03P043F04P004B111R1_011.ab1   470 
  388    USDA021F_C01_BM585780Td03P043F04P004B111F1_011.ab1   374 
  392  C USDA021R_C01_BM585780Td03P043F04P004B111R1_011.ab1   136 
  484    USDA021F_C01_BM585780Td03P043F04P004B111F1_011.ab1   470 
  492  C USDA021R_C01_BM585780Td03P043F04P004B111R1_011.ab1    36 
  504    USDA021F_C01_BM585780Td03P043F04P004B111F1_011.ab1   490 
  508  C USDA021R_C01_BM585780Td03P043F04P004B111R1_011.ab1    20 
  516    USDA021F_C01_BM585780Td03P043F04P004B111F1_011.ab1   502 
Contig length: old 576, new 576

Contig length: old 576, new 576
New start: 0 
S Change at: 23; seg lengths: entry 1, contig 1