No. words: 1131; after pruning: 1091


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 5.2 (1,1:521)  480  1.34 0.00 0.19  USDA021F_D01_BM585780Td04P043F04P004B111F1_009.ab1        1   521 (41)  C USDA021R_D01_BM585780Td04P043F04P004B111R1_009.ab1   (48)   521     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C USDA021R_D01_BM585780Td04P043F04P004B111R1_009.ab1   569 
   72    USDA021F_D01_BM585780Td04P043F04P004B111F1_009.ab1    24 
   91  C USDA021R_D01_BM585780Td04P043F04P004B111R1_009.ab1   479 
  421    USDA021F_D01_BM585780Td04P043F04P004B111F1_009.ab1   374 
  425  C USDA021R_D01_BM585780Td04P043F04P004B111R1_009.ab1   145 
  563    USDA021F_D01_BM585780Td04P043F04P004B111F1_009.ab1   516 
Contig length: old 609, new 609

Contig length: old 609, new 609
New start: 0 
S Change at: 56; seg lengths: entry 1, contig 1