No. words: 1105; after pruning: 1065


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.9 (1,1:528)  480  1.32 0.38 0.19  USDA021F_E01_BM585780Td05P043F04P004B111F1_007.ab1        1   529 (43)  C USDA021R_E01_BM585780Td05P043F04P004B111R1_007.ab1   (3)   530     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C USDA021R_E01_BM585780Td05P043F04P004B111R1_007.ab1   533 
   39    USDA021F_E01_BM585780Td05P043F04P004B111F1_007.ab1    34 
   58  C USDA021R_E01_BM585780Td05P043F04P004B111R1_007.ab1   476 
  496    USDA021F_E01_BM585780Td05P043F04P004B111F1_007.ab1   492 
  500  C USDA021R_E01_BM585780Td05P043F04P004B111R1_007.ab1    34 
  516    USDA021F_E01_BM585780Td05P043F04P004B111F1_007.ab1   512 
  520  C USDA021R_E01_BM585780Td05P043F04P004B111R1_007.ab1    14 
  530    USDA021F_E01_BM585780Td05P043F04P004B111F1_007.ab1   526 
Contig length: old 576, new 576

Contig length: old 576, new 576
New start: 0 
S Change at: 23; seg lengths: entry 1, contig 1