No. words: 1139; after pruning: 1099


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 3.4 (1,1:520)  471  1.54 0.19 0.19  USDA021F_H01_BM585780Td08P043F04P004B111F1_001.ab1        1   520 (53)  C USDA021R_H01_BM585780Td08P043F04P004B111R1_001.ab1   (45)   521     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C USDA021R_H01_BM585780Td08P043F04P004B111R1_001.ab1   566 
   69    USDA021F_H01_BM585780Td08P043F04P004B111F1_001.ab1    23 
   88  C USDA021R_H01_BM585780Td08P043F04P004B111R1_001.ab1   479 
  545    USDA021F_H01_BM585780Td08P043F04P004B111F1_001.ab1   500 
  549  C USDA021R_H01_BM585780Td08P043F04P004B111R1_001.ab1    18 
  560    USDA021F_H01_BM585780Td08P043F04P004B111F1_001.ab1   515 
Contig length: old 618, new 618

Contig length: old 618, new 618
New start: 0 
S Change at: 53; seg lengths: entry 1, contig 1