No. words: 1130; after pruning: 1104


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 3.4 (1,1:520)  481  0.77 0.19 0.19  USDA021F_B02_BM585780Td10P043F04P004B111F1_014.ab1        1   519 (50)  C USDA021R_B02_BM585780Td10P043F04P004B111R1_014.ab1   (40)   521     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C USDA021R_B02_BM585780Td10P043F04P004B111R1_014.ab1   561 
   53    USDA021F_B02_BM585780Td10P043F04P004B111F1_014.ab1    12 
   62  C USDA021R_B02_BM585780Td10P043F04P004B111R1_014.ab1   500 
   74    USDA021F_B02_BM585780Td10P043F04P004B111F1_014.ab1    33 
   90  C USDA021R_B02_BM585780Td10P043F04P004B111R1_014.ab1   472 
  539    USDA021F_B02_BM585780Td10P043F04P004B111F1_014.ab1   499 
  543  C USDA021R_B02_BM585780Td10P043F04P004B111R1_014.ab1    19 
  551    USDA021F_B02_BM585780Td10P043F04P004B111F1_014.ab1   511 
Contig length: old 609, new 609

Contig length: old 609, new 609
New start: 0