No. words: 1690; after pruning: 1664


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.8 (1,1:846)  788  0.12 0.12 0.00  USDA003F_A11_BM585780Tu01P004B05B11F1_081.ab1        1   827 (0)  C USDA003R_A11_BM585780Tu01P004B05B11R1_081.ab1   (16)   847    20 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  410 nodes

 207 str. conn. components

Path
    1  C USDA003R_A11_BM585780Tu01P004B05B11R1_081.ab1   863 
   20    USDA003F_A11_BM585780Tu01P004B05B11F1_081.ab1     4 
  348  C USDA003R_A11_BM585780Tu01P004B05B11R1_081.ab1   516 
  352    USDA003F_A11_BM585780Tu01P004B05B11F1_081.ab1   336 
  360  C USDA003R_A11_BM585780Tu01P004B05B11R1_081.ab1   504 
  368    USDA003F_A11_BM585780Tu01P004B05B11F1_081.ab1   352 
  372  C USDA003R_A11_BM585780Tu01P004B05B11R1_081.ab1   492 
  376    USDA003F_A11_BM585780Tu01P004B05B11F1_081.ab1   360 
  400  C USDA003R_A11_BM585780Tu01P004B05B11R1_081.ab1   464 
  404    USDA003F_A11_BM585780Tu01P004B05B11F1_081.ab1   388 
  408  C USDA003R_A11_BM585780Tu01P004B05B11R1_081.ab1   456 
  420    USDA003F_A11_BM585780Tu01P004B05B11F1_081.ab1   404 
  440  C USDA003R_A11_BM585780Tu01P004B05B11R1_081.ab1   424 
  456    USDA003F_A11_BM585780Tu01P004B05B11F1_081.ab1   440 
  460  C USDA003R_A11_BM585780Tu01P004B05B11R1_081.ab1   404 
  464    USDA003F_A11_BM585780Tu01P004B05B11F1_081.ab1   448 
  468  C USDA003R_A11_BM585780Tu01P004B05B11R1_081.ab1   396 
  472    USDA003F_A11_BM585780Tu01P004B05B11F1_081.ab1   456 
  476  C USDA003R_A11_BM585780Tu01P004B05B11R1_081.ab1   388 
Contig length: old 863, new 863

Contig length: old 863, new 863
New start: 0 
S Change at: 840; seg lengths: entry 1, contig 1