No. words: 1494; after pruning: 1468


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:817)  651  0.00 0.00 0.00  USDA003F_B11_BM585780Tu02P004B05B11F1_089.ab1       47   722 (0)  C USDA003R_B11_BM585780Tu02P004B05B11R1_089.ab1   (0)   772    97 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1    USDA003F_B11_BM585780Tu02P004B05B11F1_089.ab1     1 
  346  C USDA003R_B11_BM585780Tu02P004B05B11R1_089.ab1   473 
  350    USDA003F_B11_BM585780Tu02P004B05B11F1_089.ab1   350 
  358  C USDA003R_B11_BM585780Tu02P004B05B11R1_089.ab1   461 
  366    USDA003F_B11_BM585780Tu02P004B05B11F1_089.ab1   366 
  374  C USDA003R_B11_BM585780Tu02P004B05B11R1_089.ab1   445 
  378    USDA003F_B11_BM585780Tu02P004B05B11F1_089.ab1   378 
  390  C USDA003R_B11_BM585780Tu02P004B05B11R1_089.ab1   429 
  394    USDA003F_B11_BM585780Tu02P004B05B11F1_089.ab1   394 
  422  C USDA003R_B11_BM585780Tu02P004B05B11R1_089.ab1   397 
  438    USDA003F_B11_BM585780Tu02P004B05B11F1_089.ab1   438 
  442  C USDA003R_B11_BM585780Tu02P004B05B11R1_089.ab1   377 
Contig length: old 818, new 818

Contig length: old 818, new 818
New start: 0