Wheat microsatellite WMC 25/06/01
wmc(11b3)
Plate reference : 11b3
WMC locus number : WMC Length of sequence : 259
Last updated : Tue, Feb 25, 1997 at 22:37
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.18.SEQ. Trimmed to insert at 5' end and to Rsa1 at 3' end. Related to 8a9, 8d9 , 9F5 but flanking sequences are different. No substantial microsatellite.
PCR Comments :
Length of sequence : 259 Consensus sequence is :
..
GGACGAAGGC GGCGGCGGCG GCGACGACGA TGCACGACGA CGGTTAACGG
CACAGGGGGC GAGAGTGAGA GTGTGAGTGA GGGTCGGTCA TGCGCGTGGG
GATAAGGTAG GGATAGTTGT AGCGCGTTTG CCAAAACGCG CTACAGCTAA
TCTGAATAGC AGTAGCGCCT TGCACATAAA CCGCTACTGC TAAGTGTAAC
TATACAAAAA ATACGTCAAT GCAAAAAATA CATTGTCCAT CAATGATATT
TTTGTGTAC
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wmc151(11c3)
Plate reference : 11c3
WMC locus number : WMC151 Length of sequence : 361
Last updated : Wed, Aug 20, 1997 at 10:35 am
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.19.SEQ. Trimmed to insert at 5' end and to Rsa1 at 3' end.(CA)30 188 to 247. 2 loci, 1 weak polymorphic of correct size. Bases 1-216 (complment) ie 5' side of microsatellite match part of 7e4.
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
TAcggccTAgAAgATATgAgcA at 19 length 22 bases, Tm 61
Reverse primer details :
TTgTTgTTTTggAAcgcTTgTc at 264 length 22 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 267 bases.
Length of sequence : 361 Consensus sequence is :
..
GTTCATTAGA TTTGGAGCTA CGGCCTAGAA GATATGAGCA AAACAAGTTA
AACATGGCAT TCATGCAAAA TGCATACAAA CATCAACCAA ACACCTCAAA
ACAAGGTTAC AACATGATAA TATGAAACTA CATGCAAAAT CAAGCAAGTT
TCATATAGAG CACACTCAAA ACGGAGCAAC GGTTCAACAC ACACACACAC
ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACTA
TACAAGTTTA AAGGACAAGC GTTCCAAAAC AACAACTAGG CATATTGCAA
GCACCAAAAC AACATGCTAA AGCACCCCAA CATGAGAAAA AAAGGCATGA
ACATGATGTA C
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wmc152(11d3)
Plate reference : 11d3
WMC locus number : WMC152 Length of sequence : 408
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.20.SEQ. Trimmed to insert at 5' end and to Rsa1 at 3' end. (GA)19 166 to 203, (GT)20 96 to 135, (GT)13 140 to 165.
PCR Comments : 51C anneal, product;
Forward primer details :
cTATTggcAATcTAccAAAcTg at 7 length 22 bases, Tm 58
Reverse primer details :
TcTcTTcTTgccAcATATTcgT at 236 length 22 bases, Tm 61
Expected size of amplified fragment (Chinese Spring=) 251 bases.
Length of sequence : 408 Consensus sequence is :
..
CCAACTCTAT TGGCAATCTA CCAAACTGTT GAGAAAACAA AGAAAGCTTT
AGAAATCAAT ATTAAAAAGG GCGAAAAAGG TGTGTGTGTG TGACTGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGACTG TGTGTGTGTG
TGTGTGTGTG TGTGTGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
AGAGTCTCCT TAAAAGCTAT GTAGTGAAAC ATCAGACGAA TATGTGGCAA
GAAGAGAAGA CTCACAGTGT CAGGAACATT TGGATTTGCA CCAGCTTCCA
ACAGGCACTT AAGAGCTTCA GTCAAGCCTT TCTCTACAGA GGTTGCCAAA
GGATTGTGAC AAGGCCCAAA TCCATCAACA TCAGCTCCAG CCTATCAAAA
GTAAGTAC
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wmc(11e3)
Plate reference : 11e3
WMC locus number : WMC Length of sequence : 97
Last updated : Wed, Aug 20, 1997 at 10:40 am
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.21.SEQ. Trimmed to Rsa1 at 5' end and to insert at 3' end. Has some homology to first inserts in 2d9 and 2h9, and is related to 2h10, though is not a duplicate.(CA)10 15 to 34,
PCR Comments :
Length of sequence : 97 Consensus sequence is :
..
GTACCCTCGA CAAACACACA CACACACACA CACACCTAGT TGCGATTCGA
TGCTCGGGTT GCAACTGGGG ACCCTCGACA AACACACGCA CACACAC
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wmc153(11f3)
Plate reference : 11f3
WMC locus number : WMC153 Length of sequence : 180
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.22.SEQ. Trimmed to insert at 5' and 3' end. (GT)20 54 to 93, (GT)18 95 to 130, (GT)11 132 to 153. 3-4 loci. one smeary polymorphism, 1 small polymorphism.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
ATgAggAcTcgAAgcTTggc at 4 length 20 bases, Tm 64
Reverse primer details :
cTgAgcTTTTgcgcgTTgAc at 161 length 20 bases, Tm 66
Expected size of amplified fragment (Chinese Spring=) 177 bases.
Length of sequence : 180 Consensus sequence is :
..
TGGATGAGGA CTCGAAGCTT GGCACCCTAT GACAGAGACT ACCATGACAT
CTAGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTTGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TGTGTGTGTG TGTGTGTGTG
TGTGATGCAT GTCAACGCGC AAAAGCTCAG
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wmc(11g3)
Plate reference : 11g3
WMC locus number : WMC Length of sequence : 111
Last updated : Wed, Aug 20, 1997 at 11:55 am
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.23.SEQ. Trimmed to Rsa1 at 5' end and to insert at 3' end. (GT)11 89 to 110. No room for primers. Bases 30-111 (ie 5' side of microsatellite) match part of 9H6.
PCR Comments :
Length of sequence : 111 Consensus sequence is :
..
GTACTCGGGG AAGTTCAGGC GCGTTACTCG GGAAGTTCAT GTTGTGATCA
GAATATTATT CTGATCCCGT GATCAGAATA GTGTTTATGT GTGTGTGTGT
GTGTGTGTGT G
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wmc(11h3)
Plate reference : 11h3
WMC locus number : WMC Length of sequence : 431
Last updated : Mar 10 Nov 1998 at 10:16
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.24.SEQ. Trimmed to insert at both ends. (GT)19 164 to 201, (GT)11 256 to 277, (GT)8 330 to 345, (GT)10 411 to 430. Embedded in complex repeating structure. Use as minisatellite probe? Sequence related to 7A11. Bases 353 to 398 show homology to 17c10 bases 214 to 259 (46 in longest run, maxScore = 41). Bases 52 to 103 show homology to 21d2 bases 95 to 146 (52 in longest run, maxScore = 80), true duplicate with 21d2, 11h3 has priority.
PCR Comments :
Length of sequence : 431 Consensus sequence is :
..
AGGATCCCCA ATTGCAAGTT ACCCATCGAC TCGCAACTAG GTGTGTGTGT
TTTATTCGTG GCCCTCAGTT GCAAGTTGAC CATCAACTCG CAACTAAGGG
GCTGTGTGTC TATTGAGGAC CCCCAGTTGC AAGTTGTCCA TCGACTCGCG
ATTAGGGGGT GCTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TTTTATTCGT GTCCCCTAGT TGCAAGTTGA CCATCAACTC GCAACCAGGG
GTCTTGTGTG TGTGTGTGTG TGTGTGTCTT TTGCTGTGGC CCCCGGTTGC
AATCCACTCA TCGAGTCGCA ACTAAGGATG TGTGTGTGTG TGTGTAGAGG
GTGTGTGTGT TTTGTTGTGG CCCCCAGTTG CACCCCGCTC ATCGACTCTT
AACTAAGGAT GTGTGTGTGT GTGTGTGTGT G
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wmc(11a4)
Plate reference : 11a4
WMC locus number : WMC Length of sequence : 324
Last updated : Mer 30 DŽc 1998 at 10:47
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.25.SEQ. Trimmed to insert at 5' and to Rsa1 at 3' ends. (GT)9 225 to 242, (GT)9 293 to 310. No room for primers. Duplicate of 13H2. Bases 67 to 161 show homology to 25c6 bases 224 to 318 (complement) (95 in longest run, maxScore = 95). Duplicate with 25c6, 11a4 has priority.
PCR Comments :
Length of sequence : 324 Consensus sequence is :
..
TGCGTTGTTG CGTGTGTGGG TGCACACGCA CATGTGTGTG CTGCTGCTGC
ATGTGTGTGT GCATGTGTGC TGCTGCATGT GTACGTGCGC ATGCGCGCGT
GTGTGTGTGC TATTGCGTGC CTATGTGCTG CATGCGTGTG TGCTGCCGTG
TGTGTGTGTG TATGTGATGC GTGTGTGTGT GTTGCTGCGT GTGTGTGCGC
GTGCATGTGT GCTGCTGCGT GTGCGTGTGT GTGTGTGTGT GTGCACGCGC
GTGTGCATGC GTGTGTGTGT GTGTTGGTGC GTGTGTGTGC GCGTGTGTGT
GTGTGTGTGT TGCTGCATGT GTAC
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wmc(11b4)
Plate reference : 11b4
WMC locus number : WMC Length of sequence : 480
Last updated : Tue, Feb 25, 1997 at 23:07
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.26.SEQ. Trimmed to insert at 5' end and to Rsa1 at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 480 Consensus sequence is :
..
AAAACAAAAT CCCCAAATCA AATCAAATCC CCCCAAATCC CAAATCTGAT
AACCCAACCC TAATCCTAGC TCTACAGCTC ACCCGGAAAT GCATGGCTTC
GTCGTCGGAG AGGTTCATGT ATTGCACGCT TGAGTCCTGG CTGCTCTTAT
CCTCCATGGC GTGACGATGA GCCGGTTGAG GTGGCGGCGG CGGCAGGCAG
GCGGCGGGCG GCGGCGAATC GGAGAGAGGA GGGAGAGCCA GAGTGAGAGT
GAGGTCGAGC GTCGAGCGAG AGTGAGGCGA GTCCGACCGA GCCCATGTAA
CCGACCGAGC CCATGGAGTA TAACCGACCG CGTCGGCCTC GTCCTAGTCA
GCGACCCATC CACGCGCCGA TTCGGCCAGC GTGTCAGCTG ACATGTGGGC
CCGACCTGTC GGATACGCGG TCAATACGTG CTTATACGGC TTTCAGTCCG
TTATGCACCA CTTAGGCCCT GAGTTGGTAC
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wmc(11c4)
Plate reference : 11c4
WMC locus number : WMC Length of sequence : 289
Last updated : Wed, Mar 18, 1998 at 2:28 pm
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.27.SEQ. Trimmed to Rsa1 at 5' end, and to insert at 3' end (corrupted linker removed 18.3.98). No substantial microsatellite.
PCR Comments :
Length of sequence : 289 Consensus sequence is :
..
GTACTACCCA AAGCCAAGCC TCACATCATT TGTAGAAATT GCAAGCCAAA
TCAAACAACA ACAAAATTGA AGAGCACCAT TTACCTCTGA ATGGCAAGCA
TCCCCTCTTG AAAAAGCTGA TCCAAGTTGA GGTAGCCCAA GAATCCACAC
GCGCTGTGGT GAACAGGAGG TAGGTTGGCA GCCCCATCGC CTTGTCCACG
TGCACCGCAG ATCCTATGAC ACCGTCAGCG ACAACACGGA TCACCGGTAG
AACTCTGTTC GTCCTTCCGT GCCTCCCGAC AAGCTCCGA
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wmc(11d4)
Plate reference : 11d4
WMC locus number : WMC Length of sequence : 246
Last updated : Lun 5 juil 1999 at 17:22
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.28.SEQ. Trimmed to insert at both ends. Member of 1G1, 2F8 2D11, 2H11, 2A12, 6G1, 6H3, 6H4, 6B11, 7e3, 7h5, 7b6, 8a11, 5h10, 5d12, 11d4, 9H3 etc. (CA)9 13 to 30, (CT)8 45 to 60. No room for primers. Bases 78 to 123 show homology to 10d1 bases 1 to 46 (complement) (46 in longest run, maxScore = 41).
PCR Comments :
Length of sequence : 246 Consensus sequence is :
..
CTCTCTCTCT CTCACACACA CACACACACA AACTAAGACT CCATCTCTCT
CTCTCTCTCT CACACACACA CACCCCACAC ACACACTAAG ACTCCATCTC
ACACACACAT GCTCTAGGCG GAGCATTTGT TCCTACCACC CTTCATCCAA
CCTTACCCGT ATGATAAAAA ATCACCTTTA TTTTCTTGCA TAACATGGAC
AGATTCCACT TTACTTTAGT AGTCAGCAAA CTTATCATCT GTGCCC
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wmc(11e4)
Plate reference : 11e4
WMC locus number : WMC Length of sequence : 161
Last updated : Thu, Feb 27, 1997 at 1:44 pm
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.29.SEQ. Trimmed to insert at 5' end and tp Rsa1 at 3' end. (GT)28 2 to 57. No room for primers.
PCR Comments :
Length of sequence : 161 Consensus sequence is :
..
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TGTGTGTGAG GAACACTGAT CTTAGATGTT GGAACCATAT GGAATGTAAT
ATCTTGAAAC TTGAGCTTGG TTGCCCTCCA GAGATGGCAA TGGCGGCAAC
TGCTCGTGTA C
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wmc154(11f4)
Plate reference : 11f4
WMC locus number : WMC154 Length of sequence : 299
Last updated : Lun 28 DŽc 1998 at 17:07
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.30.SEQ. Trimmed to insert at 5' end and to Rsa1 at 3' end. (GT)34 118 to 185. (2 loci - 1 clear polymorphism). Bases 27 to 116 show homology to 25h1 bases 1 to 90 (90 in longest run, maxScore = 81). Duplicate with 25h1, 11f4 has priority.
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
ATgcTcgTcAgTgTcATgTTTg at 74 length 22 bases, Tm 63
Reverse primer details :
AAAcggAAccTAccTcAcTcTT at 199 length 22 bases, Tm 60
Expected size of amplified fragment (Chinese Spring=) 147 bases.
Length of sequence : 299 Consensus sequence is :
..
CGCACAGTCT GTGGCTGAGT TCATGCATGC TAAGCAACCA GCAGCGCTGC
ATGCCAGACG GGCATTCGTC CCCATGCTCG TCAGTGTCAT GTTTGACACG
GTATCCGTGT CCATGCAGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGACTC CAGTGCCAAA
GAGTGAGGTA GGTTCCGTTT TTGCACTTTT GCCGCCCGGA CCACTTGTCA
AATGGAAAAT AATGTAAATG CAAGGAGATG AAAGTTTATG CATAGGTAC
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wmc155(11g4)
Plate reference : 11g4
WMC locus number : WMC155 Length of sequence : 272
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.31.SEQ. Trimmed to insert at both ends. (CCG)5 microsatellite. Weak homology to 13d3.
PCR Comments : 61C anneal, product;
Forward primer details :
TAgTcTTTccTcATTcTccccc at 76 length 22 bases, Tm 62
Reverse primer details :
cgcggAAgAAgAAgcAcTTAcA at 249 length 22 bases, Tm 65
Expected size of amplified fragment (Chinese Spring=) 195 bases.
Length of sequence : 272 Consensus sequence is :
..
GCTGGATAAC CATATTTTCA GCCTCCTCGT TTTTTGCACC CACTTATCAG
TCTTTCCTTA TAAATAGCCA CAACCTAGTC TTTCCTCATT CTCCCCCTTT
CTAGCGTCTT CTTCCTCTCG AAAACCTTCT GTCGCTCGAG CTCCGCCGCC
GCCGCCGCAG AGCACCTCGT CCTCCTCAAC CTTGGCCGCT GCATCAACCT
GAGTTGGACT AGAGTATGCC GGCGCCCCGC CGCAGTTGAA TCTGCACCTG
TAAGTGCTTC TTCTTCCGCG TG
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wmc156(11h4)
Plate reference : 11h4
WMC locus number : WMC156 Length of sequence : 419
Last updated : Thu, Jun 11, 1998 at 11:29 am
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.32.SEQ. Trimmed to insert at both ends. Multiple inserts in this clone joined 230-237 by linkers. (CA)10 30 to 49, (GCC)6 317 to 334. Primers shown here are for first insert. Second insert has complex repeating structure - use as minisatellite probe? Complex band pattern.
PCR Comments : 51C anneal, product;
Forward primer details :
gccTcTAgggAgAAAAcTAAcA at 6 length 22 bases, Tm 58
Reverse primer details :
TcAAgATcATATccTccccAAc at 195 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 211 bases.
Length of sequence : 419 Consensus sequence is :
..
ATGGGGCCTC TAGGGAGAAA ACTAACATGC ACACACACAC ACACACACAT
GCACACACAC ACACAATTGT GTCGTATTGT CCAGAGAACC AACCAAGGAT
TTCTCTAGGC TCGATCTTAC ACCACAAATC CCCAATAGCA CCTGATCAAC
CGACAAGGCT GCAAGTTAGA CAAGGCAGGT GTGGGGGTGA ATGAGTTGGG
GAGGATATGA TCTTGACCTT CTAATCTGTT AGTCCACGCG TGGACTAGTG
GGCTGGGGCC GTGCGGCGGA GTGGAGGACG AGAGGAGGGT GGAGGCGGGT
GGCCGTCACC GTCACCGCCG CCGCCGCCGC CGCCATGGGA GATGGGTGGG
GGTCAGGTCG GGCGGAGAGT TCGATGCGAG CAAGGAATTT TCGCTACCGT
TGATTTTTGG CCAGAGCTG
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wmc(11a5)
Plate reference : 11a5
WMC locus number : WMC Length of sequence : 215
Last updated : Tue, Apr 1, 1997 at 8:44 am
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.33.SEQ. Trimmed to insert at 5' end and to Rsa1 at 3' end. (GT)9 23 to 40. No room for primers.
PCR Comments :
Length of sequence : 215 Consensus sequence is :
..
CTGAAACTAC GCGCGCGCGT GCGTGTGTGT GTGTGTGTGT GCGTGTGCGT
GTGTGTGTGC GTGTGTTTGC ATGGGAATGA ATGGATTAGA GGATTTGGTA
TGAGGGATAC GGTTGTGGAC GCAAACATTT GAGGGGTGAC CAAGTGTTGT
CTGCGGACGC ATCCTAACGT GTTCACAGAC GTTTGAGGGG TGATATTTGA
TGGATCCAGC TGTAC
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wmc(11b5)
Plate reference : 11b5
WMC locus number : WMC Length of sequence : 528
Last updated : Lun 8 FŽv 1999 at 10:07
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.34.SEQ. Trimmed to insert at both ends. Multiples inserts (2) in this clone joined at 231-250 by linkers. (CA)13 251 to 276, (TTG)12 95 to 130, (TTG)9 140 to 166. No room for primers in either insert. Bases 140 to 187 show homology to 19a5 bases 76 to 123 (48 in longest run, maxScore = 21). Bases 170 to 187 show homology to 12b10 bases 79 to 96 (18 in longest run, maxScore = 27). Bases 140 to 188 show homology to 22c6 bases 50 to 98 (49 in longest run, maxScore = 21).
PCR Comments :
Length of sequence : 528 Consensus sequence is :
..
GCTAGCTTCG GCGAGGCGCG GGCGACGGGC GGCGAGGGAG GAGGGAGAGC
GGGGAAGGGA CCCGGCGGCG GCGGCGGCTA AGGTTTGGCA CGTGTTGTTG
TTGTTGTTGT TGTTGTTGTT GTTGTTGTTG TTCTTGTTCT TGTTGTTGTT
GTTGTTGTTG TTGTTGGTGG TGGTGGTGGT GGTGGTGTTG TTGTTGTTGT
TGGTGGTGGT GGTGTTTGTT GTTGTTGGTG TTAGTCCACG CGTGGACTAA
CACACACACA CACACACACA CACACAGAGG GGGGGGGGGG GTTGTATTGG
TGATGCCAGA TCTTGTGAAG GTATACTGGG GGGGAGACCG AAGGTATAAA
AGTTGCTCCA GCATTAGGTT GACATGACCG ACTCTACACC TGCCTTAAAA
GTCATATGTG GGCCTCAAAA GAAAGTTCAA TTATTGTTCA GAAGAGACAA
AATTTGAAAG ACTATCATTG CACAATATGT GTCCGTCATA AGACATTGTT
TAAGCTAGCC CAAGCTAGAC ATTGTTTG
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wmc157(11c5)
Plate reference : 11c5
WMC locus number : WMC157 Length of sequence : 298
Last updated : Mar 10 Nov 1998 at 17:32
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.35.SEQ. Trimmed to Rsa1 at 5' end and to insert at 3' end. (CA)29 212 to 269. Redesign primers? Bases 115-229 (ie 5' side of microsatellite) match part of 5g9. Bases 189 to 263 show homology to 24c1 bases 82 to 156 (75 in longest run, maxScore = 82), duplicate, 11c5 has precedence.
PCR Comments : 61C anneal, smear; 51C anneal, product;
Forward primer details :
cTTgATccAAgTggTTcTTTcc at 183 length 22 bases, Tm 62
Reverse primer details :
TccAAATgTTTgcgAAAccTgA at 270 length 22 bases, Tm 66
Expected size of amplified fragment (Chinese Spring=) 109 bases.
Length of sequence : 298 Consensus sequence is :
..
GTACAACAAT GCATCATATA GGTAAATTTT TGCAGAAAGC TAGTTTTGAG
TGCTATGACA TGTTCAACAA TTCGTAAAGC ATGCATCATA AGAATTTAAG
TAACCATGAG GATAGGTTAC AGATATCAAC ATAAACAGAG TTTGGATCAA
CTCCAGCTTA ATCAACATGT CAAGTCTTTT GACTTGATCC AAGTGGTTCT
TTCCACTCAT CCACACACAC ACACACACAC ACACACACAC ACACACACAC
ACACACACAC ACACACACAT CAGGTTTCGC AAACATTTGG ACGTAGCC
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wmc(11d5)
Plate reference : 11d5
WMC locus number : WMC Length of sequence : 450
Last updated : Wed, Aug 20, 1997 at 10:45 am
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.36.SEQ. Trimmed to insert at 5' end and to Rsa1 at 3' end. Originally mislabelled as duplicate of 1g1 ( it is not, 11D4 is) . No substantial microsatellite.
PCR Comments :
Length of sequence : 450 Consensus sequence is :
..
TTCAAAAAAC CACCACTTCC TCGGCAAGTG AGTAACAAAA ACCACTAAAC
GTGATGTGAG CCGCGACTAA CTGAGAATCT GACTTATCGG GCCCACCCGT
CGGAGCCACG TGGCAAAGGG CAAACGGCAA AGCGGAAACG GCCGTTAGGA
CCCCGCTAGT TAAGCCCAGC GTGCGCACGT TAGGGCATTC CTCCCCAACC
GCTCTCTTCT CTGCTCTGCT CCTTCCTTTC TCGCGTCGCA CCTCCCGCCG
CCGCCGCCGC GAGCAGCTTC GCACCGCTGA CGGGAGGGGA GACATGGTTT
CTTGGTCTGA GCCTTCCGAC TGTTCCGACT CTTCCTCTGA CGATGTGAGC
CGGGTAAGAT TCTGCTCTTG TGCATCTAGG GTTAGGGTTA GGGAGAAAGG
GGAATTTCTT CCCGATAGCA ATTGACTTCA TTTTCCCTCT GCCTAGGTAC
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wmc(11e5)
Plate reference : 11e5
WMC locus number : WMC Length of sequence : 647
Last updated : Wed, Aug 20, 1997 at 10:54 am
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.37.SEQ No overlap between forward and reverse sequences. Trimmed to Rsa1 at 5' end and to insert at 3' end. Duplicate of 6a11, matches 8g11. (GA)16 195 to 226, (GT)9 177 to 194, (GT)9 317 to 334.
PCR Comments :
Length of sequence : 647 Consensus sequence is :
..
GTACAGATGA TAAGTTTGCT GACTACTAAA GTAAAGTGGA ATTTGTCCAT
GTTATGCAAG TAAATAAAGG TGATTGTTAT CATACGGGTA AGGTTGGATG
AAGGGTGGTA GGAACAAATG CTCCTCCTAG AGCATGTGTG TGCGAGATGG
AGTCTTAGTG TGTGTGTGGG GTCTTTGTGT GTGTGTGTGT GTGTGAGAGA
GAGAGAGAGA GAGAGAGAGA GAGAGAGGAG AGAGAGAGAT GGAGTCTTAG
TTTGTGTGTG TGTGTGAGAG AGAGAGAGAT GGAGTCTTAG TGTGTGTGGG
GGGGGGGTGT GCGTGCGTGT GTGTGTGTGT GTGTTTGTGT GTGTGTGAGA
GAGAGAGAGA G
(break)
TG TCGCGGGGTC CTCGGTGGCG GATGTAATTT
AAGTGTGCAT GGCTTCATCA TTTGGGGCGG AAAACGAATC GACATCTCGA
TGTGATACAG CCCTTTCCAT TTTCGTTGGG AAAGAACGGC GAAGTCCGTC
CGAACCCTCC AATGAAGAAA TAAGAGGAGA GCAAAGCGCC AATGGCGCGC
GAAGCGCATG CGGAAGGGGC ACGGAGAAAT AAAGAAGTGT GGGGGAGAAG
CAGCCGAGCT CATTCCCTTC GCTTCCTGGG CCCAAAGCAG TGCTTTGTTT
CCTGGCCAAA T
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wmc(11f5)
Plate reference : 11f5
WMC locus number : WMC Length of sequence : 167
Last updated : Tue, Feb 25, 1997 at 23:25
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.38.SEQ. Trimmed to insert at 5' end, linker sequence also appears 45-52 (may or may not be an artefact). Also trimmed to insert at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 167 Consensus sequence is :
..
CTCACTCGGT TATGGGCGGC AAGCCAATAT ATATTCGTGG GCCCGCGTGG
ACGTCCATCA TTTTGACCAA CGATGAGAAA TGTTGTCAGG GTGGATTCTT
CTTCTTTTCT TTGAGTTACC ATATAGTAGG TCGAGCATTC CAAGCCTAAT
TAAGTTTGAG CGCATGC
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wmc(11g5)
Plate reference : 11g5
WMC locus number : WMC Length of sequence : 762
Last updated : Lun 2 Nov 1998 at 9:53
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.39.SEQ. No overlap between forward and reverse sequences. (CA)9 39 to 56. No room for primers. Bases 688 to 735 show homology to 22a10 bases 167 to 214 (48 in longest run, maxScore = 41).
PCR Comments :
Length of sequence : 762 Consensus sequence is :
..
GAATTCCTCG AGGCGCGTGG ACTAAACAAA CAAACAAACA CACACACACA
CACACACCCA CCCCCCCCCA CACACACACC CAACCATGCT AGACTGTTCC
GGAGACTTTC TTTTTTTATT GCTCAGCAAT GAGGTGTGGA GATAAGGATG
TGGAGATAGG TGCAACTATC TTTTGTAAAA TTATCATAGT TCGCTTTCTA
TCCGTCAGAT ATAGATCAGA CGGTCTATAT TACAAGATGG CGGGCACACC
ATCATCACCA ACTCGTTTTT TATAAGGGTT AGTCCACGCG TGGACTAACT
CCTTGAAAGA CACACAAACT GCCAAGGTCT GAAGGGAACC AACCGATCTG
GGGACACAAA CTCTCACAGG CCCTTCGCTG GCG
(break)
ACGTCGTCCT TTTCCCGAAC AAAAGCACAG TCAGTGCATA GCGAAAGTTG
TTTGGATGTT TCGTTATATG CACGCCCCAG TTGTCTCCGT TCCTTCTGTG
ATCAACATGT TTTACCACAC GCAACATCCA GACCAATTCT TTCAGAGTAA
ATAGCACTGG CGGTCTATGA ACTTGCACTG CGGGTGCACT TTAGTCACAC
AACTTGCAAA CCGGAAGAAC CCGTCACAGA ACTTGCATTG CGGGTGCAAT
CAAGTCACAC GCGCCAGCTG AACCGCGCCG ACGCCCGGTT TTCTCAGTTA
GTCCACGCGC CTCGAGGGAT CCTCTAGAGT CGACCTGCAG GCATGCAAGC
TTGGCGTAAT CATGGTCATA GCTGTTTCC
Go back to index
wmc(11h5)
Plate reference : 11h5
WMC locus number : WMC Length of sequence : 221
Last updated : Thu, Feb 27, 1997 at 1:55 pm
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.40.SEQ. Trimmed to Rsa1 at 5' and to insert at 3'. Core microsatellite is similar as 1D1, flank is different. (GT)11 195 to 216. No room for primers.
PCR Comments :
Length of sequence : 221 Consensus sequence is :
..
GTACCTTACT AGTTTTGCGC AGAGTAGCAA ATTTCACGCA GCCCCGGGTA
TATCAAAATG CAGGGCCCAT GCATCATTGC CTTTCGGTCG AACCTACATC
CACAATTTTT TGTACGTACA TGTGTAGTGT ATGTGTAGTG TGTGTGTGTG
TGCGTGTGTG TTTGTGTGTG TCTGTGTGTA TGTGTGTGTG TGTAGTGTGT
GTGTGTGTGT GTGTGTGCGT G
Go back to index
wmc(11a6)
Plate reference : 11a6
WMC locus number : WMC Length of sequence : 210
Last updated : Thu, Feb 27, 1997 at 1:55 pm
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.41.SEQ. Trimmed to insert at 5' and to Rsa1 at 3'. (CA)8 106 to 121, (CA)8 185 to 200. No room for primers.
PCR Comments :
Length of sequence : 210 Consensus sequence is :
..
GCACAAGATC ACTAGCTAGA TGTAGAGTCA AAGTCAACCA AAAAGGAACA
TAACCGGTCA TGGGAACCAT AACTGAAAGA CACACACACA CTACACACAC
ACAGACACAC ACACACACAC AGACACACAC ACACACATAC ACACAGACAC
ACCACACACA CACATACACA CAGACACACA CAAACACACA CACACACACA
CTACACGTAC
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wmc158(11b6)
Plate reference : 11b6
WMC locus number : WMC158 Length of sequence : 454
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.42.SEQ. Trimmed to insert at 5' end and to Rsa1 at 3' end. (GT)17 287 to 320, (CT)24 119 to 166, (CT)9 197 to 214, (CT)9 241 to 258.
PCR Comments : 51C anneal, product;
Forward primer details :
AAcTggcATcATgTTTTgTAgg at 27 length 22 bases, Tm 61
Reverse primer details :
AATgTAgTcAAAAgAggTggTg at 382 length 22 bases, Tm 58
Expected size of amplified fragment (Chinese Spring=) 377 bases.
Length of sequence : 454 Consensus sequence is :
..
GTGCTTGGGT CTCTACAAAG CAATCAAACT GGCATCATGT TTTGTAGGAC
TCAACTGGCA TTGCATTACA TCCTTGCAAT TTCGTATTCA TGTGTATTCC
GAATCTTGCC AACAAATACT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
CTCTCTCTCT CTCTCTAGAT CTCTCTCTCT CTCTAGGTCA CTAGATCTCT
CTCTCTCTCT CTCTCACACA CAAACACATG CCAACAAATA CTCTCTCTCT
CTCTCTCTCA CGCACGCGCG CTCTCTCGCT CTCAATGTGT GTGTGTGTGT
GTGTGTGTGT GTGTGTGTGT CACATTTCGT CCAATCACAT GCATGGGGGA
AGGCTAAGAC CTGCACAACG AACGATTTAT ACACCACCTC TTTTGACTAC
ATTCTCTCTA TGCTCTAATG TCAAGGAAGT TCAACACCTC TCGCGCACAT
GTAC
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wmc(11c6)
Plate reference : 11c6
WMC locus number : WMC Length of sequence : 606
Last updated : Tue, Feb 25, 1997 at 23:33
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.43.SEQ No overlap between forward and reverse sequences. Trimmed to insert at both ends. No substantial microsatellite.
PCR Comments :
Length of sequence : 606 Consensus sequence is :
..
CCGGACTGTG GGCGTGGAGG TTGCCAGTCC AACCTCTACC AGCCAGGCTC
CAGCACCTGG TCTGGAGGGG GAGGCAAGCA CAAGGCGCGA GTCGGACACT
CCTCCGACGG AGGATGCCGA CAGACTGTCC GCCACCAAGT CTGAGGTGGA
GAGCGCCGCG CCGCCTCTCA ATCCCTGCAT AAGTGGAGGC GCTCCACCGC
ACCTCGACCC GAGTCCGCAG CCCTCGAAAC CACTCGAATC CGAGCTCCAA
TTTCTTGCGG TGCCGCCGCC GCCGCCACAG CTCCAGTCGA CGCCAGAGAC
CACCACCGTC ATCTCCGAGG
(break)
TGG TGGTGGTGGC GGGCGGGCTA
TGGTGGTGAC CGTGGAGTCC TAACTAAGAA GAGCACTGGC TATCAAATTT
AAAATAATGA GTTTTTAGGA CAGTGTCTTG ATTATGTGGA ACCTAATGTT
ACGTCTGTCT GTTATCTGCT ATAGTTGAAC TCAATAGGGG CAGAGATGTG
GTTCTATGTT ATTTTTGGTT TTGCTTTTTT CTTGATGATG CAAGAGTTAA
TTTGTGTATG CTGCTTCGAG GCTTGGATGA GTCTCAAGGA AGTTTCATGC
ATTTTGCCGT ATGTTGCGCT
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wmc159(11d6)
Plate reference : 11d6
WMC locus number : WMC159 Length of sequence : 203
Last updated : Mar 22 DŽc 1998 at 9:41
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.44.SEQ. Trimmed to insert at 5' and to Rsa1 at 3' end. (GT)6T(GT)6 at 145-161. Bases 62 to 82 show homology to 2h1.1 bases 145 to 165 (complement) (21 in longest run, maxScore = 36).
PCR Comments : 61C anneal, product;
Forward primer details :
cggggAccTTgcTAgggTTTcA at 63 length 22 bases, Tm 70
Reverse primer details :
TTTccTcAAAcAccccATgcTc at 170 length 22 bases, Tm 67
Expected size of amplified fragment (Chinese Spring=) 129 bases.
Length of sequence : 203 Consensus sequence is :
..
CTGCACGGGC AAACCAGCAG ATGTTCACAA TGGAGGCCTT GCGGCGGCGG
CGGCAGCAAG CGCGGGGACC TTGCTAGGGT TTCAAGCGAG GGAGGGGGTG
TGTGTGTGCG TGCGCGCATG CCCATGGAGG TTTTGGTGTG TGTGTGTTGT
GTGTGTGTGT GGAGGGGGCG AGCATGGGGT GTTTGAGGAA ATGACGCGGG
TAC
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wmc160(11e6)
Plate reference : 11e6
WMC locus number : WMC160 Length of sequence : 263
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.45.SEQ. Trimmed to insert at both ends. (CA)24 60 to 107. Forawrd primer has weak homology to a seequence beyond reverse primer (does not involve 3' end of primer. True product is 169 bases (excluding terminal A), false priming may give product 226 bases.
PCR Comments : 51C anneal, polymorphic product on agarose;
Forward primer details :
cATggcTccAAgATAcAAAAAg at 6 length 22 bases, Tm 60
Reverse primer details :
AggccTggATTcATgATAgATA at 153 length 22 bases, Tm 59
Expected size of amplified fragment (Chinese Spring=) 169 bases.
Length of sequence : 263 Consensus sequence is :
..
TAATGCATGG CTCCAAGATA CAAAAAGGGC CAAAAGCGTT GTAATTAACC
CGGGATAGCC ACACACACAC ACACACACAC ACACACACAC ACACACACAC
ACACACAGAC ACACACACAG AGACAGACAG TATCCAGTGG TCACATACGG
AGTATCTATC ATGAATCCAG GCCTCATTCA TTCATGCACG CAGCTTATTG
CCTCGGCCGC TTTTTCTAGC TTTACGCCGT TGGCTTGCGG CTTCCTTCCG
TTTCCTCCGC GCG
Go back to index
wmc161(11f6)
Plate reference : 11f6
WMC locus number : WMC161 Length of sequence : 639
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
PIC Value : 0.66
Comments : AGR204.46.SEQ No overlap between forward and reverse sequences. Insert appears to contain multiple inserts (2) joined by linker sequence at 334-341. Trimmed to insert at both ends. (GT)25 245 to 294. Reverse primer begins GT (first part of Rsa1 site in the genome - does not appear in sequence above as replaced by linker). Bases 1 to 279 show homology to 12h6.1 bases 1 to 279 (279 in longest run, maxScore = 211). Bases 362 to 639 show homology to 12h6.2 bases 50 to 327 (278 in longest run, maxScore = 239).
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
AccTTcTTTgggATggAAgTAA at 172 length 22 bases, Tm 61
Reverse primer details :
gTAcTgAAccAcTTgTAAcgcA at 312 length 22 bases, Tm 60
Length of sequence : 639 Consensus sequence is :
..
GGTGAGGTTC CGGGCAAAGT CCCGCAGAGT GCAGAGGTCG TCGGCGTGGC
ACGACGTCGC GCTCGTCGCC GGCAGGAGGA ACACCAAGCA GAGGAGCACT
AGCCAGCATT TCGCCATGGA TTAAGCTGTG GTATGCTATG TATCCACAAA
CAGAACAACT CTTTGTAAGA AACCTTCTTT GGGATGGAAG TAATTCACAA
GTGCTCTTGG CAAAAACTGC TTGGGTGGTG CATGTTGTCT TATAGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGCGTGT
GTTTGTAAGC ATGCGTTACA AGTGGTTCAG TTAGTCCACG CGTTGGACTA
ACAGCGCACG GAA
(break)
CCCCAGAAGC AAAGCAAAGC AAAGCAAACC
CCTCAAACCC CACGCCGGAG AAACCAGACA AACGTCGCAT GATTTTCCCC
TCCCTCGCCG CCGCCGCCGC CTCATATGTG TAGAGCGCCT CCTCCGGATC
GCTACCTTAA TTCGCCGGAA ATGATGGTGA CTAGTAAGTG TCAATTCTGA
TGTGCTTGAT CTTCACACCG AAGTTGGTTG AAGCCCTCGA GGAAAATCGT
TTGAAGACTT CATGCACTTC ATGTTTGTAA GTGACAATGT GCACCC
Go back to index
wmc162(11g6)
Plate reference : 11g6
WMC locus number : WMC162 Length of sequence : 272
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.47.SEQ. Trimmed to insert at 5' end and to Rsa1 at 3' end. (TG)5TA(TG)5 at 210-230. Matches 11f7
PCR Comments : 61C anneal, product; 51C anneal, smear;
Forward primer details :
AcTcAAggcAgccTgggTATgg at 56 length 22 bases, Tm 68
Reverse primer details :
cccccgTcATTTccTcAAAcAc at 248 length 22 bases, Tm 68
Expected size of amplified fragment (Chinese Spring=) 214 bases.
Length of sequence : 272 Consensus sequence is :
..
GGATGGGGAT GAGGATCTGT GGGAAAGGGG GCATTTGGCA GGCGTCATCT
AAGAAACTCA AGGCAGCCTG GGTATGGAGA TCAGTGGGTA AGCTGCACGG
GCAAACCGGT AGATGTTGAC AATGGAGGCC TTGCGGCAGC ATGGACATTT
CTAGGGTTTC GAGTGAGGGA GGGGGTGTGT GTGTGTGCGC GCGCCCGAGG
AGGTTTTGTT GTGTGTGTGT ATGTGTGTGT GGAGGGTGGG AGCGGGGGTG
TTTGAGGAAA TGACGGGGGT AC
Go back to index
wmc(11h6)
Plate reference : 11h6
WMC locus number : WMC Length of sequence : 639
Last updated : Lun 8 FŽv 1999 at 10:07
Owner : Rogers, Monsanto Date at Agrogene : 21.2.97 Public Domain : Yes
Comments : AGR204.48.SEQ No overlap between forward and reverse sequences. No overlap between forward and reverse sequences. Trimmed to Rsa1 at both ends. No substantial microsatellite. Bases 171 to 204 show homology to 22d10 bases 23 to 56 (34 in longest run, maxScore = 43). Bases 292 to 317 show homology to 22b4 bases 43 to 68 (26 in longest run, maxScore = 57). Bases 190 to 227 show homology to 22c4 bases 200 to 237 (complement) (38 in longest run, maxScore = 60). Bases 73 to 141 show homology to 22c5 bases 355 to 423 (complement) (69 in longest run, maxScore = 116).
PCR Comments :
Length of sequence : 639 Consensus sequence is :
..
GTACCCACAC ACCTCTCCAC ATTTTCAAAT AAGGCCTTCC CTCGTTCATC
CTTTTCTCTC ACAAGATAAA CTAGTCATAC AAATGCATCT TGATGTTACG
TGCAACGCAC GGGCATCTTG CTAGTAAGAA TGAAAACAAA CGACAAAAGA
TATATTTGGA CGGTGGTTCG AAGTCATGAC CGCGGGCACA GCGGACAAGG
TGGCCTTGTA TTGGTATGCT GAGCCGTTTG TTTTAAGTTT TAACACACAG
GAGCTGGTGT GGTGATTATA CACACACGCA CGCATGCACA TGAACTGCAT
GCACGCAACA CTCACATAAA CACATGCACC CACGCACGCA TGCAACACTC
ACATCTACAC ACGC
(break)
CGATGATTT TTTTTGAAGT GCTAATAGTT
TGTTCGCATC TCCTATTTCC AGCCCTGCCT TTTATAGGGG AAAATAGTGG
TCTTCATTCA TTAATATTCA TGGGGCCCAG GCGGTGTCCC AGGGCTGCCA
CTATACAACG ATAAAGCGCC ACAAACTAAA TTATGAGCAT TTACATTATG
CTAATATGCC CCGCACACAA CCGCCTTGGC ACCTCTAGCT AAGACCTTGA
CAACTCCTAC ATCAACGTTG AACTTCAGAA ACATTCCGGA GACTAAATGG
TAC
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wmc163(9A1)
Plate reference : 9A1
WMC locus number : WMC163 Length of sequence : 386
Last updated : Thu, Jun 11, 1998 at 11:29 am
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. (GT)8 327 to 342. Duplicate of 13H1.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
TTAcAcccATcAgggTggTcTT at 65 length 22 bases, Tm 64
Reverse primer details :
gTccgTcTATccATAcgAcAAA at 349 length 22 bases, Tm 61
Expected size of amplified fragment (Chinese Spring=) 306 bases.
Length of sequence : 386 Consensus sequence is :
..
GTACTTAAGC TCGCTTAAGA GTAAACAACA ACCATGAACA ACAATCGTAA
TTGAAACATG CAAGTTACAC CCATCAGGGT GGTCTTGTAT CGTCATAATA
ACACATGAAC CTTCATTTTC CACTGCACGA ACTTTACACA AATAGTATGT
GTGCACTCTT TTCATTGGAC TAGACACCGT TTATCATGAA CATTATGCCC
ATCGGGGCAC CATCCTTTTT GAGCCGCTCC TTTGGAAGTC CANTGTTGCT
CTCGAGAATT CGTATATTCC CGTCCTGCCC CTTCCGCCCT CTCTCTCTCT
TTCTCTCTCT TCGTGTGTTT GTGTTCGTGT GTGTGTGTGT GTATGTGTTT
TGTCGTATGG ATAGACGGAC CATAATTTAA TCTCTG
Go back to index
wmc(9b1)
Plate reference : 9b1
WMC locus number : WMC Length of sequence : 407
Last updated : Mar 22 DŽc 1998 at 9:41
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. (CA)14 178 to 205, (CA)9 274 to 291. Too difficult to design primers due to internal repeat (minisatellite - like) structure. Bases 1-122 (complement ) ie. 5' side of microsatellite match part of 5b8, 2g11 Bases 283 to 320 show homology to 25f5 bases 111 to 148 (complement) (38 in longest run, maxScore = 73).
PCR Comments :
Length of sequence : 407 Consensus sequence is :
..
CCCCCCCACA CACACCCACA CTTCCCAACA CCGAAGNAGT AGGGTGACAC
CTCGATCTTG ATACTAATCT ATCGACTGGC TTCTCTCTCA AACATACACA
CACACACTAC CTGGCACCGA AGAGTAGGGT GACACCTCGA TCTTGATACT
AATCTATCAA CTGGATTCTC TCTCAAACAC ACACACACAC ACACACACAC
ACACACTACC TGGAACCGAA GGAGTAGGGT GGCACGTCGA TCTTGATAAT
AATCTATCGA CTCCTCTTTC AAACACACAC ACACACACAC ACTCGCTAGT
TGTGCCTCTG TGCCTACCGC GCACACTCTC GATACGTCTT TCTCTCCCTC
CCCCTCCCCC AAGAATGGCA ACAGAAGGGT GACAACTCGA TCTGATCATA
ATCTGTC
Go back to index
wmc(9c1)
Plate reference : 9c1
WMC locus number : WMC Length of sequence : 264
Last updated : Wed, Aug 20, 1997 at 11:03 am
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to insert at 3' end and to Rsa1 at 5' end. No substantial microsatellite. Bases 148-264 match part of 1H3 (ie 3' side of GCC repeat).
PCR Comments :
Length of sequence : 264 Consensus sequence is :
..
GTACACGTAT TTGTATACGT ATGTAATTAT ATTATGATCA TTTATGTAAA
GAGACATGAG GCTGGATGTT AGTCACCCAC GCAAATACCT AAACCTACCT
CTTCAACTTG GTATCAGCCA GATCGGGCCG CCGCCGCCCG ATCCCATCTT
CCGCATAGCC GCCGCCGCTT GCTAGCTAGC TATACACATA AGCAGGATCC
ATCCAGCTGC TTGCTAGCTA GCCACAGGGC CGCCACGTGG ACAATACGCG
CCGCCCGATC CATC
Go back to index
wmc164(9d1)
Plate reference : 9d1
WMC locus number : WMC164 Length of sequence : 277
Last updated : Jeu 27 Aož 1998 at 12:03
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to insert at 5' and to Rsa1 at 3' end. Complement of 5' side of microsatellite matches 6C6 (carries an extra 5 CA repeats), bases 167-277 ie. 3' side of microsatellite) match part of complement of 4b9, 3' side of microsatellite similar to 4b12, bases 174-276 match part of 5G3 (complement). (GT)15 177 to 206. Bases 212 to 252 show homology to 19a1 bases 68 to 108 (complement) (41 in longest run, maxScore = 37). Bases 47 to 119 show homology to 12A7 bases 39 to 111 (73 in longest run, maxScore = 97). Bases 63 to 119 show homology to 10b7 bases 279 to 335 (complement) (57 in longest run, maxScore = 83).
PCR Comments : 51C anneal, product;
Forward primer details :
gccAccgTATcTcgTATAcTTA at 82 length 22 bases, Tm 58
Reverse primer details :
TgTAggAgTAggTcgATcTgTc at 235 length 22 bases, Tm 58
Expected size of amplified fragment (Chinese Spring=) 175 bases.
Length of sequence : 277 Consensus sequence is :
..
CGTGGACTAA CTATTTTAAG TGAATCCTTA TTATAACATG CACACAAATT
TTGGGCACTT GTATTCGACT TAAGTCAGTG TGCCACCGTA TCTCGTATAC
TTACTACTCC CTCCGTCTAA GTGTAATAAG TCACGTTAGA AGGTGCAACG
GGACCAAGGT GCGTGCGTGC GTGTGCGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGTTTAA CAGCATGTGT GTGTTAGAGA GAGCGACAGA TCGACCTACT
CCTACAGAGA GATGTTGTGT AGTGTAC
Go back to index
wmc165(9e1)
Plate reference : 9e1
WMC locus number : WMC165 Length of sequence : 221
Last updated : Wed, Aug 20, 1997 at 11:12 am
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to insert at 3' end. (GT)9 53 to 70. Bases 40-141 ie to 3' side of microsatellite matches 4b10. Bases 3-67 (complement) ie. 5' side of microsatellite match part of 1d11.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide; 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
cAcAcTcgcAcgATTTTccTAT at 4 length 22 bases, Tm 63
Reverse primer details :
TcggTTAcAcTggAAgTggTcT at 192 length 22 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 210 bases.
Length of sequence : 221 Consensus sequence is :
..
CTTCACACTC GCACGATTTT CCTATTCTAT GAACCCGTGT GTGTGTGTGT
GCGTGTGTGT GTGTGTGTGT TTAACAGCAT GTGTGTGTTA GAGAGAGTGA
CACATCGACC TACTCCTACA GAGATATGGT GTGTAGTGTG GAACTATGTC
GAAGATTAAC TCCTCGCTTC AGAAGTTATC CGGGGTTCCG AAGACCACTT
CCAGTGTAAC CGAGCCTGTA C
Go back to index
wmc(9f1)
Plate reference : 9f1
WMC locus number : WMC Length of sequence : 327
Last updated : Lun 9 oct 2000 at 14:43
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. No substantial microsatellite. Bases 172 to 209 show homology to 20d3 bases 123 to 160 (complement) (38 in longest run, maxScore = 75). Bases 231 to 248 show homology to TW2d09.1 bases 204 to 221 (complement) (18 in longest run, maxScore = 41).
PCR Comments :
Length of sequence : 327 Consensus sequence is :
..
GTACAAGAGT AGATCTACCA CGAGATCAAA GAGGCTAAAC CCTAGAAGCT
AGCCTATGGT ATGATTGTTG TTCGTCCTAC GGACTAAAAC CCTCCGGTTT
ATATAGACAC CGGAGAGGGT TAGGGTTACA CAGAGTCGGT TACAATGGTA
GCAGATCTAC ATATCCGTAT TGCCAAGCTT GCCTTCCACG CCAAGGAAAG
TCCCATCCGA ACACGGGACG AAGCTTCAAT CTTGTATCTT CATAGTCCAG
GAGTCTGGCC AACGGTGATA GTTCGGCTAT CTGGTCACCC CCTAATCCAG
GACTCCCTCG GTGACCGACA CGTGGCA
Go back to index
wmc166(9g1)
Plate reference : 9g1
WMC locus number : WMC166 Length of sequence : 385
Last updated : Tue, Aug 26, 1997 at 4:29 pm
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. (GA)8 347 to 362, (GT)8 297 to 312, (GT)8 327 to 342. (Near) Duplicate of first insert in 3E8. Bases 60 to 310 show homology to 14f6 bases 1 to 251 (251 in longest run, maxScore = 183).
PCR Comments : 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
ATAAAgcTgTcTcTTTAgTTcg at 81 length 22 bases, Tm 54
Reverse primer details :
gTTTTAAcAcATATgcATAccT at 364 length 22 bases, Tm 53
Expected size of amplified fragment (Chinese Spring=) 305 bases.
Length of sequence : 385 Consensus sequence is :
..
GTACTGTCGT GGATTGCCCC TCCTTCCTCA CCTTGTCCCC ATTCGTTTCT
ACCCTCTATG GCCCAACAAC ACCGTTGGTG ATAAAGCTGT CTCTTTAGTT
CGCCATCGGC CTGCTTCCCC CGTCATGTTT CCACCGTCGT CGCACGAGGC
CCCGCGACTC CATGCGCCTC CCCGAGCTTG CTTCCCAAGA CCGGGTTTTG
CCGACGCGGC CTCTGCAGTT TTCTGAAAAA AAAATTGTGT GGTTTGTGTG
AGTGTTTGTG TTGTTGGTGT GTGTGGGTGT GATTGTTTGT GTGATGGTGT
GTGTGTGTGT GTCAGTAAGT GTGATGGTGT GTGTGTGTGT GTGATAGAGA
GAGAGAGAGA GATAGGTATG CATATGTGTT AAAAC
Go back to index
wmc(9h1)
Plate reference : 9h1
WMC locus number : WMC Length of sequence : 197
Last updated : Mar 25 Aož 1998 at 11:05
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. (GT)9 179 to 196. No room for primers. Bases 1 to 115 show homology to 12c7 bases 152 to 266 (complement) (115 in longest run, maxScore = 88), 9h1 has precedence.
PCR Comments :
Length of sequence : 197 Consensus sequence is :
..
GATCGATGGG TAAGCTGCAC GGGCAAAACG GCAGATGTTG ACGATGGAGG
CCTTGCGGCG GCGGTGGCGG GGACCTTGCT AGGATTTTGA GCGAGGGAGG
GTGTGTGTGT GTGTGCGCGC ACACCTGAGG TGGTTTTGGT GTGTGTGTGT
GTGCACGCGC GCACCTGAGG AGGTTTTGGT GTGTGTGTGT GTGTGTG
Go back to index
wmc(9a2)
Plate reference : 9a2
WMC locus number : WMC Length of sequence : 302
Last updated : Mon, Apr 7, 1997 at 9:03 am
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. No room for primers.
PCR Comments :
Length of sequence : 302 Consensus sequence is :
..
TGTGTGTGTG CGCGCGCACG TGTGCACTGC TGATATTGTG TGTGTGTATG
TGGTGTTGCG TGTTTGTGTG TGTGCGTGCG TGTGTATGCT GATGCGCGTG
TTGCTCAATG TGTTGTCGCG TGACTGCGTG TTTGTGTGTG TCTGCATGCT
GTTTTGTGTG TGTTGATTCA TGGGCGTGCG TTGTTGTGTG ATGCATGTGT
GTGTGTGTTG TGTGCGTATG TGATGCCGCT GTGTGTGTGT ATGTGATGCC
GCTGTGTGTG TGTTGCGTGC ATGTGCACGT CTTGCCATTG TGTGTGTGGT
AC
Go back to index
wmc167(9b2)
Plate reference : 9b2
WMC locus number : WMC167 Length of sequence : 619
Last updated : Thu, Jun 11, 1998 at 11:30 am
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
PIC Value : 0.61
Comments : Trimmed to insert at both ends. Multiples inserts (2) in this clone separated 380 -397 by linkers. (CA)22 87 to 130, (CA)8 535 to 550, (CA)8 553 to 568. Primers are for first insert in this clone.
PCR Comments : 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
AgTggTAATgAggTgAAAgAAg at 7 length 22 bases, Tm 57
Reverse primer details :
TcggTcgTATATgcATgTAAAg at 170 length 22 bases, Tm 59
Expected size of amplified fragment (Chinese Spring=) 185 bases.
Length of sequence : 619 Consensus sequence is :
..
TCATGTAGTG GTAATGAGGT GAAAGAAGTA GAAAATAATT GGCCAGACAA
TGATCAGGAA AGGATTGCTT TTGCCCTGTT TTTCTGCACA CACACACACA
CACACACACA CACACACACA CACACACACA TACATACACA CACACACATA
CATGCCTGCT GTTCAATTTC TTTACATGCA TATACGACCG ATAATAAAAT
TTCAAGCTGC GAAAAATGAT TCGACAGAGA CTGTCCATCT GAAATGCAAA
GGCCGAAAAT CTCATGTGAC ACCTGTAGCA TCTCTGTTGG CTCAGACATG
AAGCCAAGAG AACATTTCCA GATTCCGGAA CAGATACTCT GTAGCTATCT
AGCCTATTAC TTCTACAAGT ATACTCTGTT AGTCCACGCG TGGACTAACC
ACTCTGGTGC GGAACGTGTC CTTGTGGACC TACGAAGTTC AGTAGCAACT
TGATCCGAAG TCTTCCACCG AGGACCCCGC GACACACACA CACACACGCA
CACACACACA CACTAAGACT CCATCTCTCT CTCTCACACA CACACACACA
AACACACACA CACACACACG CACGCACACC CCCCCCCACA CACACACTAA
GACTCCATCT CTCTCTCTC
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wmc(9c2)
Plate reference : 9c2
WMC locus number : WMC Length of sequence : 287
Last updated : Mon, Apr 7, 1997 at 9:05 am
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end, and to insert at 3' end. No substantial microsatellite. Matches 11c9.
PCR Comments :
Length of sequence : 287 Consensus sequence is :
..
GTACATAGGT TCTGCTGAGG GCATAGCTCA ACAAGCCCAA ACAAAAAATA
AAAAAGGCAG CAAATGCCGG GCGAAGGAGA CGTCTAGTCT GGCTCCGGCG
GAGGCGGCGG GGGAGGCGGC GACAGGCGGA CGACCATCGA TCGGAGGTCG
GCGATGAAGG CTGAGATGGC GTCACGGTCC AGGGGACGGC TAAGTGGCCG
CCAAAGCTGC AAAAAACTCG AGAGTTTAAA GAGCGCGTCA GTAGATCGCC
GAAGAGGAGT GCGCTGAATC ACGAGCTTAT TGCGAAT
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wmc168(9d2)
Plate reference : 9d2
WMC locus number : WMC168 Length of sequence : 414
Last updated : Thu, Apr 24, 1997 at 1:10 pm
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to Rsa1 site at 5' end, and to insert at 3' end. (CT)27 338 to 391. Big difference between Tms of primers.
PCR Comments : 51C anneal, polymorphic product on agarose; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
AAcAcAAAAgATccAAcgAcAc at 91 length 22 bases, Tm 63
Reverse primer details :
cAgTATAgAAggATTTTgAgAg at 388 length 22 bases, Tm 52
Expected size of amplified fragment (Chinese Spring=) 319 bases.
Length of sequence : 414 Consensus sequence is :
..
GTACCAGGAC TTGAACCCTG GTGGGCTGGA GATACCACAG TCCCTCTAAC
CATCCAACCA CTGGTTGNTT CGCTGTTGAC CGGCTCCTTG AACACAAAAG
ATCCAACGAC ACCTCATTTG CTTCCCTCCC AACCGGCCGG CTCCAGTCGN
TCCTCCTTCC TACCCCCGGA AGAGATCATG CCCCTACGCC GCCGCTGGTC
GCCGCCGCTT ATCCCGCCCT GCAACTTCCC ATGGATCGGC GCCGCTGCCT
CTTCCGCCCT AATCTGCTCA ACCTCGACTA CAACTCCCAT CGACAGCGAG
AAGCGAGAAG GTCATGCTCA CCAGTCACCA CTAACATCTC TCTCTCTCTC
TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCAAAATCCT
TCTATACTGT GATT
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wmc(9e2)
Plate reference : 9e2
WMC locus number : WMC Length of sequence : 203
Last updated : Mon, Apr 7, 1997 at 9:07 am
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to insert at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 203 Consensus sequence is :
..
CTCGAGGCGC GTTTGTGGAC TAATCGTGTG CCTTGAGTAT TCCGGACATT
TCAACGCTAG GCACAAGACG GTTGGGTGCC CCTCAAAGAC TGTTGAAGAC
GGCGTCTTTT CTATGTCTCT TTTTGGTAGA TTTGAGTCGT AGGAAAGCCA
TACTATTAAG AGGGGGTCCG CGTCGGAAAG GTTTGGGTGG AATCATCACG
TAC
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wmc(9f2)
Plate reference : 9f2
WMC locus number : WMC Length of sequence : 247
Last updated : Lun 30 oct 2000 at 16:59
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. No substantial microsatellite. Bases 183 to 199 show homology to 10a5.2 bases 229 to 245 (17 in longest run, maxScore = 46). Bases 170 to 189 show homology to TW6a08.2 bases 328 to 347 (complement) (20 in longest run, maxScore = 41).
PCR Comments :
Length of sequence : 247 Consensus sequence is :
..
GTCCACCACC TTCGTCTTTG TCCAAGCACC AACCCGCCGC CGCGTCAAGA
ACTTTTCCAG TAAAAGAAGT TGAGTAATAT TCGGGGATTG TTTTCACACA
CACAAAAAGG TTCAGTGGTT CGAGCGCGAC ACAGTGACGC ACCGTTCGAT
CGACCGCGCG GCCGCGGTTC ACGCGCTTGC ACAGGATTCC GTATCGTGGC
TGTGGTAACT AATATAAGCG TTGCCTCAGT CTAATGTTTC CGTGTAC
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wmc169(9g2)
Plate reference : 9g2
WMC locus number : WMC169 Length of sequence : 210
Last updated : Tue, Apr 8, 1997 at 10:33 am
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
PIC Value : 0.63
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. (CA)25 65 to 114.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
TAcccgAATcTggAAAATcAAT at 2 length 22 bases, Tm 61
Reverse primer details :
TggAAgcTTgcTAAcTTTggAg at 147 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 167 bases.
Length of sequence : 210 Consensus sequence is :
..
GTACCCGAAT CTGGAAAATC AATATGAATT CAGAAACTAA TGAAGCTATC
TGATGCATGG ACACCACACA CACACACACA CACACACACA CACACACACA
CACACACACA CACAGGAAGA AGATTTGACC AGCGGCTACC CCTCCACTCC
AAAGTTAGCA AGCTTCCAAT CTTGTCTATA CATACGAGTA TATATATCCT
TTAGCTACAC
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wmc170(9h2)
Plate reference : 9h2
WMC locus number : WMC170 Length of sequence : 617
Last updated : Thu, Apr 24, 1997 at 1:29 pm
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at both ends. Multiple inserts in this clone joined by linkers at 258-275. (CA)19 378 to 415. Primers are to second insert.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
AcATccAcgTTTATgTTgTTgc at 331 length 22 bases, Tm 61
Reverse primer details :
TTggTTgcTcAAcgTTTAcTTc at 539 length 22 bases, Tm 61
Expected size of amplified fragment (Chinese Spring=) 230 bases.
Length of sequence : 617 Consensus sequence is :
..
GTACGCTCCA TGAGGAACTC CGGCGGTGAA TCCCACAATA CACCAGTCCC
TCCCGAGAGA TTCACACCAC AACCCAAGGG ATGGATTGGA TAGAAACGTA
GATCGGGAGG AGAAGAATCC ATGGGCAGGA GATCGGGGCC GGAGGGCGGA
GGAGAGGGTC GGGGCAGCGG CGGAGCATAG CCCGGCGGCG GCGGCGGCTG
TTTTAAGAGA TGAGGAGAGC AACGGGAGTG AATGGGGAAC TGCCCCCAAA
TCTCGAGTAG TCCACGCGTG GACTACAGCA TACCATCAGC TTACTGTTTT
CTGAATCTTG ATACACTGTG ATTGGCATTG ACATCCACGT TTATGTTGTT
GCCCAATTTG CTTCTCCTTC CTAGCATCAC ACACACACAC ACACACACAC
ACACACACAC ACACATCCAA ACTCTGCACC TCAAAATGTC CCCGGAAATA
AACCAGGGAA ATTTCTCCGC TCTCCGATTT TGAGTTTTCG ACACATGGGC
CATGCTCTAG ACATTTCCAA GATTTGCGCG ATCCAGTCGA AGTAAACGTT
GAGCAACCAA CTTGCTGATT TCACTATCCT AACCCACACG TTGCTCGGTG
ATAGGCTGGG ACGGTAC
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wmc(9a3)
Plate reference : 9a3
WMC locus number : WMC Length of sequence : 244
Last updated : Thu, Apr 24, 1997 at 2:55 pm
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. Matches 5F8, 9C5, 9C6. (CAA)16 25 to 72, (CAA)56 76 to 243. No room for primers.
PCR Comments :
Length of sequence : 244 Consensus sequence is :
..
CACCAACAGC AACAACAACA CCACCAACAA CAACAACAAC AACAACAACA
ACAACAACAA CAACAACAAC AACACCAACA ACAACAACAA CAACAACAAC
AACAACAACA ACAACAACAA CAACAACAAC AACAACAACA ACAACAACAA
CAACAACAAC AACAACAACA ACAACAACAA CAACAACAAC AACAACAACA
ACAACAACAA CAACAACAAC AACAACAACA ACAACAACAA CAAC
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wmc(9b3)
Plate reference : 9b3
WMC locus number : WMC Length of sequence : 209
Last updated : Thu, Apr 24, 1997 at 2:55 pm
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end, trimmed to Rsa1 at 3' end. Matches 5G11. (GA)18 19 to 54. No room for primers.
PCR Comments :
Length of sequence : 209 Consensus sequence is :
..
GAGAATCAAA GAGAGAAAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
GAGAAGGCCA TCTAGCTACT AGCTATGGAC CCATAGGTCT GTGGTAAACT
ACTCACGGTT CATCGGAGAG GCAATGGTGT TGATGTATAA GCCCTCCATG
ATCGAATCCC CCTCCAGCAC GATGCCGGAA AAGGACCCAA GATGGGATCT
CACGGGTAC
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wmc171(9c3)
Plate reference : 9c3
WMC locus number : WMC171 Length of sequence : 437
Last updated : Tue, Apr 8, 1997 at 10:38 am
Owner : Bernard, Clermont-Ferrand Date at Agrogene : 3.3.97 Public Domain : Yes
PIC Value : 0.62
Comments : Trimmed to Rsa1 at both ends. (GA)15 178 to 207, (GT)10 158 to 177.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
AgTgTgcggTgTcTAAccTATc at 22 length 22 bases, Tm 60
Reverse primer details :
ATgTTTgTTgcggTcTccTTTc at 275 length 22 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 275 bases.
Length of sequence : 437 Consensus sequence is :
..
GTACGAGATA GTGGAAGCAA GAGTGTGCGG TGTCTAACCT ATCTGGAGGC
TAGTCGATCA ATGTTTGTGA GAGAAATACG AGTCGGGGTG CGAAAGCGAG
AGTTTTGTGT GTCTGTGAGA GACATGGTAG TCGGGAAGGG GAGTGGAAGA
AGGAGTTGTG TGTGTGTGTG TGTGTGTGAG AGAGAGAGAG AGAGAGAGAG
AGAGAGAGGG AGGGGGAGTT TGTCTGATCG GTGAACAAAT GAATAATGTC
AGTTTTATAA CTAAGATGAG GATGGAAAGG AGACCGCAAC AAACATTATG
TGTGCAGGAG AGAGTAATTT TAGTGGTAGG AGTCATATCT AGAGAGATAT
GGGGTGCGTG AGAGAACCCT GGAGAGAAAG ACAGAGTGAA AGATAAGTGA
GAGTGTGTGT GTGCCGGTGA AAGGAAAGCT TAGGTAC
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