Wheat microsatellite WMC 25/06/01
wmc(11a10)
Plate reference : 11a10
WMC locus number : WMC Length of sequence : 311
Last updated : Mar 22 DŽc 1998 at 9:42
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.25. Trimmed to insert at 5' end and to Rsa1 at 3' end. No substantial microsatellite. Bases 185 to 220 show homology to 20d7 bases 62 to 97 (complement) (36 in longest run, maxScore = 57).
PCR Comments :
Length of sequence : 311 Consensus sequence is :
..
GGTAGTAGAT GGCAGCGGTG GTAATATATG ACAGCGGTGG TGGTATATGG
ATACGGATTC GAAGCGGTGG CGGATAAGCG GCGGTGGTAG ATGGCAGGGG
CGATGATAAT GGTGCGGCGG CGGCGTGACA ACTTATGATC AGAACTCGAA
ACTCTAAAAG ACTAGACTCT AAGACCAGCA ACTAGACACG ACGATGCAAC
CGCAAATTCA ACAAAGCAAA ACCCTAAAAT GATTATGCAA AGGCTCAGAT
TGGTTCGGAT ATGATGAACT AACCCTAATT TTTTTGTGGC TTTTTCGTGG
ACTGTAGGTA C
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wmc222(11b10)
Plate reference : 11b10
WMC locus number : WMC222 Length of sequence : 407
Last updated : Tue, Jun 17, 1997 at 8:58 am
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.26. Trimmed to rsa1 at 5' end and to insert at 3' end. (GT)15 167 to 196. Bases 167 to 196 show homology to 17g10 bases 78 to 107 (30 in longest run, maxScore = 55).
PCR Comments : 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
AAAggTgcgTTcATAgAAAATTAgA at 117 length 25 bases, Tm 61
Reverse primer details :
AgAggTgTTTgAgAcTAATTTggTA at 255 length 25 bases, Tm 59
Expected size of amplified fragment (Chinese Spring=) 163 bases.
Length of sequence : 407 Consensus sequence is :
..
GTACATCATG CATTTTAGTG TCATTCTTGA CGAAAAAACA GTTTTTTAAT
GAATTTTTAG TTTTTTTAGT GTTCGTAAGT AAATGTTTGC AAAGGACATC
TCCTTTGGTA GCTTACAAAG GTGCGTTCAT AGAAAATTAG AAAAGGATAA
ATCATGCATT GAATTAGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTTTTA
AAAACTGGAA CTGATGTGTG TTTAATCGTA TATAGATCAC TATAATAAAT
CTATTACCAA ATTAGTCTCA AACACCTCTC AACTTGGGTT TTAAAGTAGA
ACAGTGCATT TTGAAGACGA AACAAACATA GGGGGAGAAA TCTATTTGAA
AATTGGACTC AAAAAACCTC TCAAGTTCGT TTATAAAGTC GAGCAGTGCA
TTTCAAT
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wmc(11c10)
Plate reference : 11c10
WMC locus number : WMC Length of sequence : 301
Last updated : Mon, Apr 7, 1997 at 11:10 am
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.27. Trimmed to insert at both ends. Matches 7e1, 2E7. No substantial microsatellite.
PCR Comments :
Length of sequence : 301 Consensus sequence is :
..
CTCGTCGACG TCGATCTCCT CGTCCTCAGG GCCCACCTCG ACACCCTCCG
TGCCGCCGTC ACCGCCGCCT TCGACCTCGT CATTAGAGGA GAGCGCGATA
ACCTCGCCGC CCTCCGCGCC GCCGTCCTCG CCGCCTTCGA CCTCGTCATC
GGAGGAGAGT GCGATAACCT CGCCGCCCTC CGCGCCAGCA AAGATCGCCC
GCTCCGCCTC CATGAGCTTC GGGTGCTGCC GGCGGAGCTC TTGCATGTAG
GCCTCAGCCT CGAGATGCTC CCACGCCTCA CGATCCTCCC GCGCCATAGC
C
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wmc(11d10)
Plate reference : 11d10
WMC locus number : WMC Length of sequence : 171
Last updated : Fri, Jun 13, 1997 at 5:45 pm
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.28. Trimmed to insert at both ends. Microsatellite core identical to 7a4, 7f12, 11d10, otherwise OK. (CA)8 21 to 36. No room for primers. Bases 103 to 155 show homology to 19g4 bases 61 to 113 (complement) (53 in longest run, maxScore = 79).
PCR Comments :
Length of sequence : 171 Consensus sequence is :
..
CTCTCTCTCT CACACACAGA CACACACACA CACACAGACA CACACACACA
CACGCACACA TTGTTTCTCG CTTCATTTTT TCTGGCACTT GCATGCACAC
CGTTTTGTTT ATCTTCGTGA TGCTTTAAGT ATGCCTCGCA CAAATGCTAT
CTACCAATCC CTTAATGTAG C
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wmc223(11e10)
Plate reference : 11e10
WMC locus number : WMC223 Length of sequence : 291
Last updated : Tue, Jun 17, 1997 at 9:16 am
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
PIC Value : 0.57
Comments : AGR205.29. Trimmed to insert at both ends. (CA)15 214 to 243.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
cTcTcggTTgcAAAcAAccAcA at 133 length 22 bases, Tm 67
Reverse primer details :
cAgggAcAAcAcAcgAcAAAgT at 254 length 22 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 143 bases.
Length of sequence : 291 Consensus sequence is :
..
CCCATATCTG CATTTTGTTC ATACATTTCT CTCGACCTCC CTCCCTTGTT
TGTTAGACCT CTCTCCCTTG TTTGCCATAC CTCTCTCCCT TGCTTGTCAG
ACCTCTCTTG GCCACGTGCT AGGGGTATTT GTCTCTCGGT TGCAAACAAC
CACAAACTAT CTCTCACCTC GCTTCCGCTG TCCAAGATGC ATGTGTGATA
TGTTTTCGTA AGACACACAC ACACACACAC ACACACACAC ACACTTTTTA
TCTACTTTGT CGTGTGTTGT CCCTGTCTCT TTCACAAATG C
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wmc224(11f10)
Plate reference : 11f10
WMC locus number : WMC224 Length of sequence : 724
Last updated : Lun 2 Nov 1998 at 10:00
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.30. No overlap between forward and reverse sequences. Trimmed to Rsa1 at 5' end and to insert at 3' end. Multiple inserts (2) in this clone joined at 439-454 by linkers. (GT)50 119 to 218. Primers are from first insert. Bases 470-587 (complement, second insert) match part of 7F11. Bases 481 to 508 show homology to 21a4 bases 40 to 67 (28 in longest run, maxScore = 53).
PCR Comments : 61C anneal, product;
Forward primer details :
gAcAATggAAgccTTgcAgcgg at 24 length 22 bases, Tm 72
Reverse primer details :
gATggcATggTgAcggTggTgA at 336 length 22 bases, Tm 72
Expected size of amplified fragment (Chinese Spring=) 334 bases.
Length of sequence : 724 Consensus sequence is :
..
GTACAGGAAA ACCGGCAGAT GTTGACAATG GAAGCCTTGC AGCGGTGGCG
GCAGGGACCT TGCTAGGGTT TTGAGCGAGG GAGGGTGTGT GTGTGCACGC
ACGCCCAAGG AGATTTTCGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGTGTGT GTGTGTGTAG GGGGAGGGGC AACACACACC ATGATTCTCT
AGCCGTGTGC GGCGCCCCTC TCCCTCTAGT GCAGCCTCGG TCATATTTNC
GTAGTGCTCG GTGAAGCCCT GCAAAGATAG TTGCATCACC ACCGTCACCA
TGCCATCACG CTGCCGGAAC TCATCTACTA CTTCGCCCGT C
(break)
TC
ATCGAGCTGA ATGTGTGCTG AACGTAGAGG TGCCATGCGT TCGGTTAGTC
CACGCGTGGA CTAACGCAAG AGATTTACGA GTTCAGGCCC TTCTCAGAGG
AAGTAACAGC CCTACGTCTC GGAGCCCGGA GGCGGTCGAC TGGACTATAT
GCGTAAGAGT TACAGGAGTG CGAACCCTTC TGCCAGTGGA GGGGGTGGCT
TATATAGAGG ATGCCAAGAC CCCAGTGTAA TGCCCCGGAT ACAACTTTCC
ATATTCATAA CTCCAACTCT TGCCTTTTCC AGGGATGTGA TATGATATTT
TCTTCGTGGT TGGGTTTTGT CTTTAGTTTT G
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wmc225(11g10.1)
Plate reference : 11g10.1
WMC locus number : WMC225 Length of sequence : 605
Last updated : Lun 2 Nov 1998 at 10:04
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.31. Trimmed to Rsa1 at both ends. Multiple inserts in this clone joined at 261-278 by linkers. (CA)13 109 to 134, (GT)25 405 to 454. Primers are from first insert. Bases 378 to 475 show homology to 24a3 bases 166 to 263 (complement) (98 in longest run, maxScore = 86).
PCR Comments : 61C anneal, product;
Forward primer details :
cATccTTcAAcTTTTTggTcgg at 12 length 22 bases, Tm 64
Reverse primer details :
TTATAgAAgcAggcATcTggTg at 159 length 22 bases, Tm 61
Expected size of amplified fragment (Chinese Spring=) 169 bases.
Length of sequence : 605 Consensus sequence is :
..
GTACTTTATG GCATCCTTCA ACTTTTTGGT CGGGCCTCGC AGTGTCCTAC
TACCTGTAGA AGATTTGGTC AATCCGGAGG GCTGAAAGAG GTAAGATCGA
TTCTTTAACA CACACACACA CACACACACA CACATAATCA ATTAAAACAT
GTGACGATCA CCAGATGCCT GCTTCTATAA ATATACCTCG CTGGTATTTG
CTATTTGAAG ATCATCATAG TTCTGCACTT CATCTATTTG TTTGTCTTCG
TCGAATAGCA TAGTCCACGC GTGGACTAAA CTAATATCAA ATAAGAACCG
CCATGGATCG CCCACTAGGG TATAAATGAT TTGACGATTT ATTCACGATC
TTCGTTGGTT ATTTGTGTGT CTTAAGGCGG TGCACTTGTG TGTGGTGTGT
GCAAGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGGAGTA GGGTGATAAC CTGCAGATGG ATCTTTAAGC ACAATTATAG
CATTATCCAG TTCTAAATTA TCCTTTTGCC TCTCCTCACG ATAACACGAC
TGGGCTTTGA CGGGTTGGTA ATGAAGAAGC ATTGGTCCAC TTGGGAAGCC
AGTAC
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wmc226(11g10.2)
Plate reference : 11g10.2
WMC locus number : WMC226 Length of sequence : 605
Last updated : Tue, Jun 17, 1997 at 9:43 am
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.31. Trimmed to Rsa1 at both ends. Multiple inserts in this clone joined at 261-278 by linkers. (CA)13 109 to 134, (GT)25 405 to 454. Primers are from second insert.
PCR Comments : tested 61C anneal, no product; 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
gATcgcccAcTAgggTATAAATgA at 306 length 24 bases, Tm 64
Reverse primer details :
gTgTTATcgTgAggAgAggcAAAA at 524 length 24 bases, Tm 65
Expected size of amplified fragment (Chinese Spring=) 242 bases.
Length of sequence : 605 Consensus sequence is :
..
GTACTTTATG GCATCCTTCA ACTTTTTGGT CGGGCCTCGC AGTGTCCTAC
TACCTGTAGA AGATTTGGTC AATCCGGAGG GCTGAAAGAG GTAAGATCGA
TTCTTTAACA CACACACACA CACACACACA CACATAATCA ATTAAAACAT
GTGACGATCA CCAGATGCCT GCTTCTATAA ATATACCTCG CTGGTATTTG
CTATTTGAAG ATCATCATAG TTCTGCACTT CATCTATTTG TTTGTCTTCG
TCGAATAGCA TAGTCCACGC GTGGACTAAA CTAATATCAA ATAAGAACCG
CCATGGATCG CCCACTAGGG TATAAATGAT TTGACGATTT ATTCACGATC
TTCGTTGGTT ATTTGTGTGT CTTAAGGCGG TGCACTTGTG TGTGGTGTGT
GCAAGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGGAGTA GGGTGATAAC CTGCAGATGG ATCTTTAAGC ACAATTATAG
CATTATCCAG TTCTAAATTA TCCTTTTGCC TCTCCTCACG ATAACACGAC
TGGGCTTTGA CGGGTTGGTA ATGAAGAAGC ATTGGTCCAC TTGGGAAGCC
AGTAC
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wmc(11h10)
Plate reference : 11h10
WMC locus number : WMC Length of sequence : 704
Last updated : Tue, Jun 17, 1997 at 3:14 pm
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.32. Trimmed to insert at 5' end and to Rsa1 at 3' end. May be multiple insert, linker sequence found at 176-185. Numerous small microsatellites. No room for primers.
PCR Comments :
Length of sequence : 704 Consensus sequence is :
..
CACACACACA CAAACACACA CACACACACG CATGCATGCA CACACCACAC
GGCCAACACA CACTCTCACG CTCAAGTGCT CAACCTACAC ATGCATGCAC
ACACATCAGG CCCTAACAGA CACACACACG CACAACCAGG TGGTTCCCGC
ACACTAGTTG GAGTCTTGTC GCGTGTAGTC CACGCGAGAA GGCTGGGTTA
TGTGTGTGGG TGTGAGAGAG ATAGAGAGAG GGTGCATGTG AGTCACATAC
AAACAGATAT CAGAGAGAAA TGAGATCCAG AGAGATGGAG TTTTGTGTCT
GCGAGAGAGA AAGATATTTC ACAACGAGAG TGATAGCTAG AGAGACATAC
GAGGGAATGC AAGATATCTC TAGGGAGAGA GGGTGTGTGT GAGCGACATA
CAAGAGAACA ATGGAGAAAT ATGAGACCCT GGGAGACAGA GTTTGTGTTT
GTGTGTGAGA AAGAGACATT GAAGAGGAAG AGTCGTAGGT TCTCATATCT
AAGGAGCGAA AGACATCCCT GTATGAGGGG TGTGCGAGTG GCACACATGG
GAATAGTAGA GAGAAATGAG ACCCCGGGAG ACAAAGTTTT GTGTTTTTGT
GAGAGAAAGA GATTCCACAT GGAGAATCAT AGTTAGAGAC ACATAGCAGG
GAGCGAGATA TACTTAGAGA GAGATAGAGT GATGAAGGTC GAGGGAGAGA
GTAC
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wmc(11a11)
Plate reference : 11a11
WMC locus number : WMC Length of sequence : 136
Last updated : Mon, Apr 7, 1997 at 11:22 am
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.33. Trimmed to insert at 5' end (NB linker sequence highly corrupteD) and to Rsa1 at 3' end.
No substantial microsatellite.
PCR Comments :
Length of sequence : 136 Consensus sequence is :
..
TCACCACAGG CAAGTTCCCA GCGAACGTTT TTTTTTATCT AATGGGGCCA
CTAGGTCTTC TTTATGGTCC GTGCTTTTCA TCAAACATTC AAAAGGTAGT
TCTCTAGGGA ACGCAAAAAA CATTCCCATA TAGTAC
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wmc(11b11)
Plate reference : 11b11
WMC locus number : WMC Length of sequence :
Last updated : Wed, Apr 9, 1997 at 2:36 pm
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.34. Cannot find linker sequences - sequence was vector only - no insert. .
PCR Comments :
No sequence available for this clone
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wmc(11c11)
Plate reference : 11c11
WMC locus number : WMC Length of sequence : 6
Last updated : Tue, Apr 1, 1997 at 12:04 pm
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.35. No sequence obtained from Lark.
PCR Comments :
No sequence available for this clone
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wmc227(11d11)
Plate reference : 11d11
WMC locus number : WMC227 Length of sequence : 280
Last updated : Thu, Aug 21, 1997 at 10:40 am
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.36. Trimmed to Rsa1 at 5' end and to insert at 3' end. Similar to, but not identical to 11e11. Bases 154-280 are from the 1g1 family - caution. (CA)12 48 to 71.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
ATTTccTgAAAcAcAccccg at 12 length 20 bases, Tm 64
Reverse primer details :
cgTTTggcAggcgTcATcTA at 241 length 20 bases, Tm 66
Expected size of amplified fragment (Chinese Spring=) 249 bases.
Length of sequence : 280 Consensus sequence is :
..
GTACCCGTGT CATTTCCTGA AACACACCCC GTCCCCCTCC ACACAAACAC
ACACACACAC ACACACACAC ACCAAAACCT CCTTGGGCGT GCGCGCGCAC
ACACACACAC CCTCCCTCGC TCGAAACCCT AGCAAGGTCC CCGTCGCCGC
CGCCGCCGCA AGGCCTCCTT TGTCAACATC TGCCGGTTTT CCCGTGCAGC
TTACCCACCG ATCTCCATAC CCAGGCTGCC CTGAGTTTCT TAGATGACGC
CTGCCAAACG CCCCCTTTCC CACAGATCCC
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wmc228(11e11)
Plate reference : 11e11
WMC locus number : WMC228 Length of sequence : 519
Last updated : Mar 22 DŽc 1998 at 9:41
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.37. Trimmed to insert at 5' end and to Rsa1 at 3' end. Similar, but not identical to 11d11. (GT)11 458 to 479. Microsatellite is in region unrelated to 1g1 family. Bases 286 to 322 show homology to 25c2 bases 150 to 186 (complement) (37 in longest run, maxScore = 96).
PCR Comments : 61C anneal, product;
Forward primer details :
gcggcggcgAggAcTTTgcT at 380 length 20 bases, Tm 75
Reverse primer details :
TcAAAAcAccccgcgccccc at 483 length 20 bases, Tm 77
Expected size of amplified fragment (Chinese Spring=) 123 bases.
Length of sequence : 519 Consensus sequence is :
..
GTGACACAGC CCGCCTCAGG GCGCCGCTGT CGATGACCTC GATGTCGTAG
CCGGCGGACG AGACATGCCC GCATACTCTA GCCCGCTGCT TGAGTGTCTG
CCGCCAGTAA TGGTCGTCAG CTTCCTCGGC GACGTCAGGC AAAGAGACCA
CTATACACCT CTTTTGGGCC AGTTGCTCCT CGAGCTCCAC GGGAAGCGTA
GCCGGGCCTA GGCTGCGACG CTCTGGAGTG GGGGATGGGG ATGGGGATGG
GGATCTATGG GAAAGGGGGC ATTTGGCAGG CATCGTCTAA GAAACTCAGG
GCGGCCTGGG TATGGAGATC GGCGGGTAAG CTGTACGAGC AAACCGGTAG
ATATTGACAA TGGAGGCCTT GCGGCAGCAG CGGCGGCGAG GACTTTGCTA
GGGCTTCGAG CGAGGGAGGG GGTGTGTGTG CACGCGGGCA CTCCCGAGGA
GGTTTTGGTG TGTGTGTGTG TGTGTGTGTG GAGGGGGCGC GGGGTGTTTT
GAAGAAATGA CGTGGGTAC
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wmc229(11f11)
Plate reference : 11f11
WMC locus number : WMC229 Length of sequence : 345
Last updated : Wed, Jun 18, 1997 at 20:45
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.38. Trimmed to Rsa 1 at 5' end and to insert at 3' end. The 3' linker was truncated. (CA)15 209 to 238.
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
cggATcATcAgcAAggcAAgTA at 45 length 22 bases, Tm 66
Reverse primer details :
TgTAAggcAAgTggAcAAgTgg at 285 length 22 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 262 bases.
Length of sequence : 345 Consensus sequence is :
..
GTACCCGGAG TGCGAAGCGT GCTACTACGA GGCTCTAGGT TTCACGGATC
ATCAGCAAGG CAAGTAACAC TTTGATCATA CCTCCTTACT ACCCAGTTTT
ATTGCATTAG TTCAACCCTC AAACAATTGC ATGGTTAGGA TCTGTTTAAC
ATGTGGGTTT TGGGAAGTAG ATGAGGTCGT ACAGATTAGG TGAGAGTTCA
GATTCAAACA CACACACACA CACACACACA CACACACATC GCATGCCCTG
CCTACTGGCC TACAGCTGGC TATATAGCTG CGCTCCACTT GTCCACTTGC
CTTACAGGTG GGTCCATGCC ACATGGCAGA GGGGGGCCAC ACCAT
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wmc(11g11)
Plate reference : 11g11
WMC locus number : WMC Length of sequence : 6
Last updated : Tue, Apr 1, 1997 at 12:05 pm
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.39. No sequence obtained from Lark.
PCR Comments :
No sequence available for this clone
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wmc(11h11)
Plate reference : 11h11
WMC locus number : WMC Length of sequence : 80
Last updated : Thu, Aug 21, 1997 at 10:44 am
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.40. Trimmed to Rsa1 at 3' end, vector trimmed off 5' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 80 Consensus sequence is :
..
TCCTTTCTAT TAGTTGTTTC ATCTGCGCAT GTGAAGCAAG TTCCGTTTCT
TGATCGCTTC TTCTTTTACT AATTTGGTAC
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wmc(11a12)
Plate reference : 11a12
WMC locus number : WMC Length of sequence : 335
Last updated : Mon, Apr 7, 1997 at 11:31 am
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.41. Trimmed to Rsa1 at 5' end, trimmed vector off 3' end, highly corrupted linker. No substantial microsatellite.
PCR Comments :
Length of sequence : 335 Consensus sequence is :
..
GTACCAAGCC CAATGGATCC TATCTTTCAC CCCTGGCGTG AGATCCACAT
CCTGCGTCCA GTCCACCAGA GCAATGAACT CGAGTAGAG
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wmc230(11b12)
Plate reference : 11b12
WMC locus number : WMC230 Length of sequence : 633
Last updated : Lun 2 Nov 1998 at 10:04
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.42. Apparently no overlap between forward and reverse sequences. Trimmed to Rsa1 at 5' end and to insert at 3' end. Multiple inserts in this clone joined at 345-369 by linkers. (GT)14 92 to 119. Bases 375-445 match part of 3f10. Bases 459 to 481 show homology to 24c3 bases 274 to 296 (23 in longest run, maxScore = 69).
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
AgAAgcgAgcAggTgTgTTTgA at 6 length 22 bases, Tm 66
Reverse primer details :
cTgcTTccTcccAcAAcAgATg at 195 length 22 bases, Tm 66
Expected size of amplified fragment (Chinese Spring=) 213 bases.
Length of sequence : 633 Consensus sequence is :
..
GTACAAGAAG CGAGCAGGTG TGTTTGAATC TAAACGGTAA CTAGAAAAGT
TTGGATGTGC CGTGGTAGGC TTGCATGCCG TGAGAGTCTT TGTGTGTGTG
TGTGTGTGTG TGTGTGTGTA TGTGTGTGGC GTGAGAGTCT NNGTGCGTGC
GTGCGTGCGT GTTCCGTGAA AGCATATGGT TGGGTGTAGT CCCACATCTG
TTGTGGGAGG AAGCAGATTT TATAAGGGCG GGGGTGTCCC CTCTTAACAG
GATAGTCTNN TGGGGGTGAG AGCCAAGGCC TCTCAGAAGT CGGCGTTACT
CTCACGTTGG GCCTG
(break)
TGAGGAGC GCTGTTGGTA GATTCTGTGT
AGTCCACGCG TGGACTAGTG TGTGTGTGTG CGTGTGTGTG TGCGTGTGCA
TGTGTGTGTT TTGTCCTCTA CAGCATTCAC TTATAGCTAT GTCTTCAATT
TGATAATCTT CTGACCTAAG TGAATGTGAT CGGACCCTGA CCCCATTTGT
GCTACTCCCT CAAATTCTTT CTGTCTAGTC ATATACATTC TGCTAACATG
TGTCGAATGC CTTCACTGTG TCCTTGTTAG TTGAAGATAC AGAGACACAC
ATTTAAAACT GGTTTTAATG TCTTATCTTA TTGCCTGAAA
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wmc231(11c12)
Plate reference : 11c12
WMC locus number : WMC231 Length of sequence : 384
Last updated : Fri, Jun 13, 1997 at 5:56 pm
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
PIC Value : 0.57
Comments : AGR205.43. Trimmed to Rsa1 at 5' end and to insert at 3' end. (GA)10 127 to 146, (GT)8 81 to 96.
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
cATggcgAggAgcTcggTggTc at 8 length 22 bases, Tm 74
Reverse primer details :
gTggAgcAcAggcggAgcAAgg at 215 length 22 bases, Tm 74
Expected size of amplified fragment (Chinese Spring=) 229 bases.
Length of sequence : 384 Consensus sequence is :
..
GTACATGCAT GGCGAGGAGC TCGGTGGTCA CCATGACTGG GTGGTGCTCG
TCGCTTGGGG ATTTAAGTGT CTGTCTGTCA GTGTGTGTGT GTGTGTGCGT
GTGTGAGGGA GGGAGGGAGA GGGACAGAGA GAGAGAGAGA GAGAGAGTAT
GCTCCCGCCA ACGGGCTTCC GCCCACTCCC TTCCTGGGCG GCTGTCTCTA
GTTCTGCAGC ATTGCCTTGC TCCGCCTGTG CTCCACTTCC GTTCCACTTT
TCCCCCTTCT CAGTTATCCG TTTCTCCCTC CGTCCCTTCT GTTATCTGCT
CTTCACCATT CTTTTGTTTT CCCCCACTGC CTCTGCCTGT GATCCACTGC
TATGATCTCC CCAGCCTCTG CTATGCCTAT GCTC
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wmc(11d12)
Plate reference : 11d12
WMC locus number : WMC Length of sequence : 6
Last updated : Tue, Apr 1, 1997 at 12:06 pm
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.44. No sequence obtained by Lark.
PCR Comments :
No sequence available for this clone
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wmc(11e12)
Plate reference : 11e12
WMC locus number : WMC Length of sequence : 6
Last updated : Tue, Apr 1, 1997 at 12:06 pm
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.45. No sequence obtained by Lark.
PCR Comments :
No sequence available for this clone
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wmc(11f12)
Plate reference : 11f12
WMC locus number : WMC Length of sequence : 656
Last updated : Mar 30 mai 2000 at 9:54
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.46. Trimmed to insert at 5' end and to Rsa1 at 3' end. Multiple inserts (2) in this clone joined at 290-307 by linkers. (CA)13 217 to 242, (GA)11 31 to 52, (GA)12 116 to 139, (GA)10 243 to 262, (GT)8 368 to 383. Both inserts contain minisatellite repeats and cannot design primers. Bases 31-153 (ie 3' side of first microsatellite to 5' side of second microsatellite in first insert match part of second insert in 8H7 Bases 433 to 566 show homology to 23f2 bases 1 to 134 (134 in longest run, maxScore = 97). Bases 412 to 431 show homology to 26g6 bases 127 to 146 (20 in longest run, maxScore = 44). Bases 11 to 52 show homology to TW3g02 bases 57 to 98 (42 in longest run, maxScore = 57). Bases 101 to 138 show homology to TW4g03.1 bases 119 to 156 (38 in longest run, maxScore = 63).
PCR Comments :
Length of sequence : 656 Consensus sequence is :
..
GGATGCATGC GACAGAACTG AAGATTGTCA GAGAGAGAGA GAGAGAGAGA
GATGGAGGGA GAGGGACCAA CAAGGTTTGT GTGTTGGATG CGTGCGACAG
AACTGAAGAT TGTCAGAGAG AGAGAGAGAG AGAGAGAGAT GGAGGGAGAG
GGACCGACAA GGTTTGTGTG TTGGATGCGT GCGACAAAAC TGAAGATTGT
CAGAGAGAGA GAGAGACACA CACACACACA CACACACACA CAGAGAGAGA
GAGAGAGAGA GATGGAGGGA GAGGGACCAA CAAGGTTTGT AGTCCACGCG
TGGACTAGGG TGTGCCCTTT TGTCAGGGGG TCCCCAGTTG AATGTCAAGC
ATCGACTTGC AACTAGGGTG TGTGTGTGTG TGTTTGCTGA CAAGCCCCAG
TTGCAAATTG CCCATCGACC CGCAACTAGG GTGTGTGTGT GTTTGTTGAC
GAGCCCAGTT GCAAGTTGAC CATCAACTCG TAACTAGGGG GTGTGTGTGG
GTGTGGGTGT CAAGGGTCCC CAATTGCATG TCGATAATCG ACTTGCAACT
AGAGATAGTG TGTGTGTGCG TGTGCGTGCG TGTGTGTTTT ATTTGTAGCC
CCCTGTTTTG CCAGATGACC ACCAACTCGC AACTAGGGGC GTGTGGGTGT
GTGTAC
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wmc(11g12)
Plate reference : 11g12
WMC locus number : WMC Length of sequence : 462
Last updated : Lun 5 juil 1999 at 17:23
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.47. Trimmed to Rsa1 at 5' end, cannot locate 3' end. No substantial microsatellite. Bases 414 to 457 show homology to 26a10 bases 181 to 224 (44 in longest run, maxScore = 36).
PCR Comments :
Length of sequence : 462 Consensus sequence is :
..
GTACTTGCCG AGGAGGACGA TGATGAGAAT ACGCCACTTG GCGTAATTGG
ACTTCTGCAG GTTGAGGACG ACGGCGACGT GTGTCTTGAC GCTGGCGACA
TGGACGGCCT GGGAGGCTGG CGACGCGGGG GATGGGACAA GTGCGCCGGA
GGTCTGCGCC CTAAGCACTG ATGTGGTGGA GGTGGGGATT GACATTGCGG
CGGCGCGGGG AGGGAGGAGG AGCCGAGGCG GCACCAAGGG TAGCGGGGCG
GCGGCGGCTT AGGGTTTTGG TGGCGGCGGA AGCTAGGTTT TAGGAACTAG
GGCTGATACC ATATAAACGT GAAACGGTTT GAGGGAAGAC GCCTCTCAAG
GGGTGATCGG CTCATATATT TATAGCAGGA TTACAAGTCC TGGAGACCAA
GAGAGAAACC CTATACGCGC CTCGAGGGAT CCTCTAGAGT CGACCTGCAG
GCATGCAAGC TT
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wmc(11h12)
Plate reference : 11h12
WMC locus number : WMC Length of sequence : 482
Last updated : Mer 23 DŽc 1998 at 16:29
Owner : Benoist Date at Agrogene : 24.3.97 Public Domain : Yes
Comments : AGR205.48. Trimmed to insert at both ends. No substantial microsatellite. Bases 58-213 (complement) (3' side of poly-G run) match part of 6F5. Bases 164 to 188 show homology to 21d4 bases 94 to 118 (25 in longest run, maxScore = 67), duplicate, 11h12 has priority. Bases 1 to 91 show homology to 21f8 bases 377 to 467 (complement) (91 in longest run, maxScore = 155). Duplicate with 21f8, 11h12 has priority.
PCR Comments :
Length of sequence : 482 Consensus sequence is :
..
GCAAAGGCCA CCAACGATGG GGTGCGAGAG AGAAAATGCC CGTAGAGAGG
GAAGAGAAGG TGTGTGCGCG TGAGAGGAGT CGACATCGAG ATAACGTGTT
TGTTCGAGAT ACACCGAGGA AGACTACTAT ATATTGATGG TGCATGTAGG
CGGGAATTAA ACAAAGGGAT GGTCTTATTG GTTTCGGGGA TATAGGGGAA
GAGTGAGAGG CGGGGGGGGG GGGAGCTAGA AGGAGATAGT TAAGTGTGAG
TGTGTGTTTT ACCCATCCAG GCGGAAGTTA TGTGCACAAA AGAGGAGAAC
GATTCAATGT GGCGTTAGGA TTGAGGGTAA TTAACTATGT ATGGAGACAT
AGAGACCTTG AACGTGCATG TGTGAGAGGT ATACATGTAT ACGTGGGATG
TGTGTGTGTG CACGCGCGCA TGATCGAGAT AAAAGAAAGA AGACATAAGT
CATAAGATCA ATGACATGGG AGAGACGGAT CG
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wmc(5A1)
Plate reference : 5A1
WMC locus number : WMC Length of sequence : 457
Last updated : Mar 10 Nov 1998 at 14:08
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to RSA1 at 3' end. Multiple inserts (2) joined at 167-184 by linkers. Matches 4c7. (GA)15 60 to 89, (GT)18 24 to 59. Bases 319 to 336 show homology to 17e11 bases 176 to 193 (18 in longest run, maxScore = 62). Bases 293 to 457 show homology to 21d3 bases 62 to 226 (complement) (165 in longest run, maxScore = 147), duplicate, 5A1 has priority.
PCR Comments :
Length of sequence : 457 Consensus sequence is :
..
CCACAGAAAA CTAAAACGTC TTTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG GAGCACCTAG
TTCATATTCG TCTTGGACTA TCCATGTCTT CCCGCCACGC CATGTGCACC
TCATTGGTGC TTGACCTAGT CCACGCGTGG ACTACCAAAC AACGCGGGAA
AGGGGCGAGC CCCGTTTTGG GTCTGCTTCG AGTGGCATGA GGAGCTGCAT
TGAACAAGGT CAAACTGATT TGAATTGGAG ATACCGATGG TGGGCATCGT
TTGGCCACAT TGCATCCATG CATGGACACA CTATTCAAAT TGGAGATGAT
GGGTGGCTTT CACAGCTCAT ATCTAAATGA TGTGTGTGTG TGTGCGTGTG
TGCATGCATG TGTGTGTGTT GTGTGTGTGT GTGTTATGCA TGTTAAACAC
ATTGTAC
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wmc232(5b1.1)
Plate reference : 5b1.1
WMC locus number : WMC232 Length of sequence : 621
Last updated : Wed, Aug 27, 1997 at 21:07
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at both ends. Multiple inserts (2) joined by linker related sequence 310-317.(CA)11 367 to 388, (CA)14 391 to 418, (GT)23 56 to 101. Primers shown are for first insert.
PCR Comments : 51C anneal, product;
Forward primer details :
gAgATTTgTTcATTTcATcTTcgcA at 23 length 25 bases, Tm 65
Reverse primer details :
TATATTAAAggTTAgAggTAgTcAg at 106 length 25 bases, Tm 52
Expected size of amplified fragment (Chinese Spring=) 108 bases.
Length of sequence : 621 Consensus sequence is :
..
GTACCACTAA TATTTTTTGT CTGAGATTTG TTCATTTCAT CTTCGCATGC
AAAAGGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TTATTCTGAC TACCTCTAAC CTTTAATATA CAAAAGGCAT GGAGTGTTGC
AGCTGCTAAA CTGTTGGAAC GAGGGGGTGC CGATAGATCA CACAACGCCC
CATCCAGCCA AACCACAACT TCACCTACCA GTTCGACGTT GCCGGGCAGG
TAGGCACCCT GTGGTGGCAT GCTCATGACG CCTTCCTCCG GGCAACCGTG
CACGGCGTAG TCCACGCGAC GTCAAGAATC TTCGTCGGAT GAACTGAGCC
TGCGGATCCC CCCCAACACA CACACACACA CACACACACG CACACACACA
CACACACACA CACACACAAA AGAAGGGCCA AGCCTGCGGA TGCTCGTTGA
ACCCAAAAAA GGTCCAATAT TCACTGGGAG CAGGAGAATA GAACACCCGG
GCACGGTGAG TAGATCCAAG GAAAATGGTA AGCAGGGCGA GTAGAATGGT
CTTCTAACCA CGATCTGCTC AGCAGATGCA GAAAATTTCC GGCAACCTCC
CAACCGATAG AATCAGAGTA C
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wmc233(5b1.2)
Plate reference : 5b1.2
WMC locus number : WMC233 Length of sequence : 621
Last updated : Wed, Aug 27, 1997 at 21:07
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at both ends. Multiple inserts (2) joined by linker related sequence 310-317.(CA)11 367 to 388, (CA)14 391 to 418, (GT)23 56 to 101. Primers shown are for second insert.
PCR Comments : 61C anneal, product;
Forward primer details :
gAcgTcAAgAATcTTcgTcggA at 318 length 22 bases, Tm 66
Reverse primer details :
ATcTgcTgAgcAgATcgTggTT at 556 length 22 bases, Tm 65
Expected size of amplified fragment (Chinese Spring=) 260 bases.
Length of sequence : 621 Consensus sequence is :
..
GTACCACTAA TATTTTTTGT CTGAGATTTG TTCATTTCAT CTTCGCATGC
AAAAGGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TTATTCTGAC TACCTCTAAC CTTTAATATA CAAAAGGCAT GGAGTGTTGC
AGCTGCTAAA CTGTTGGAAC GAGGGGGTGC CGATAGATCA CACAACGCCC
CATCCAGCCA AACCACAACT TCACCTACCA GTTCGACGTT GCCGGGCAGG
TAGGCACCCT GTGGTGGCAT GCTCATGACG CCTTCCTCCG GGCAACCGTG
CACGGCGTAG TCCACGCGAC GTCAAGAATC TTCGTCGGAT GAACTGAGCC
TGCGGATCCC CCCCAACACA CACACACACA CACACACACG CACACACACA
CACACACACA CACACACAAA AGAAGGGCCA AGCCTGCGGA TGCTCGTTGA
ACCCAAAAAA GGTCCAATAT TCACTGGGAG CAGGAGAATA GAACACCCGG
GCACGGTGAG TAGATCCAAG GAAAATGGTA AGCAGGGCGA GTAGAATGGT
CTTCTAACCA CGATCTGCTC AGCAGATGCA GAAAATTTCC GGCAACCTCC
CAACCGATAG AATCAGAGTA C
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wmc234(5c1)
Plate reference : 5c1
WMC locus number : WMC234 Length of sequence : 606
Last updated : Wed, Aug 27, 1997 at 21:07
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. Multiple inserts (2) in this clone joined at 349-366 by linkers. First insert matches 7g4. (CA)13 502 to 527. Primers are for second insert.
PCR Comments :
Forward primer details :
cAAggAcTcAATcccTgcATAc at 380 length 22 bases, Tm 63
Reverse primer details :
AcTgcTTcTTTgTccTccTggT at 572 length 22 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 214 bases.
Length of sequence : 606 Consensus sequence is :
..
GTACGATTAC GACGTTCGGA CACACCATTA CGCTGTGGTG TTCCTGGTGG
CGTGAGTTGC GAAACTATTC CGCATTGTTT CAAATGAAGA CCAAACTCGT
AACTCAAATA TTCTCCTCCA CGATCAGATC GTAGAAACTT TATTTTCTTA
TTACGATGAT TTTCCACTTC ACTCTGAAAT TCTTTGAATT TTTCAAATGT
TTCAGACTTA TGCTTCATGA AGTAGATATA CCCATACTTT CTCAAATCAT
CTGTGAAGGT GAGAAAATAA CGATACCCGC CGCGAGCCCC AACATGTTCC
GGAGAACGGA GTTTTAGTCA TCTTGCTCAT GAGGCATGGT TTGCAAGTTA
GTCCACGCGT GGACTAACTT GAGTGAAGGC AAGGACTCAA TCCCTGCATA
CCCCCAAATT ACAAAGCAGA CTGGGCAGAA TTCAAAAGGG TCAGGGAAAC
TAAAGAGTTT GCTGAGAAGA GTTTCAAGCA ATCAGAACTT CAGAAGAATA
ACACACACAC ACACACACAC ACACACACCG TATGGGTGCG GCAGGATGCT
ACGGCATGAA ACCGATATGG GACCAGGAGG ACAAAGAAGC AGTAGCGACG
GGTGGG
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wmc235(5d1)
Plate reference : 5d1
WMC locus number : WMC235 Length of sequence : 334
Last updated : Wed, Aug 27, 1997 at 21:07
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
PIC Value : 0.54
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end.(CA)25 178 to 227
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
AcTgTTccTATccgTgcAcTgg at 86 length 22 bases, Tm 65
Reverse primer details :
gAggcAAAgTTcTggAggTcTg at 299 length 22 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 235 bases.
Length of sequence : 334 Consensus sequence is :
..
GTGTGCGCGC GCGCGTGTGT TGTCTTTTTT GTCGCACGTG AAAAAGATTC
AAAACATTTT ACCCAGATGA ATTTGAACTA ACGTGACTGT TCCTATCCGT
GCACTGGATC ATTTTTAGTT CCTTTCATCT AGTAGTGGAT TTGTTTTGAC
TCAGGTCTAT ATGAGGTCGC TCCTCTACAC ACACACACAC ACACACACAC
ACACACACAC ACACACACAC ACACACACGT GACACAAACA CGCATGAGAC
CATGACTTTC CCATTCTGCC TCTGGGTGTG CGCCGCAAAG TGGAACGGCA
GACCTCCAGA ACTTTGCCTC TTATGATCAT GTAC
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wmc(5e1)
Plate reference : 5e1
WMC locus number : WMC Length of sequence : 126
Last updated : Thu, Aug 21, 1997 at 11:05 am
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : TRrimmed to Rsa1 at 3' end. Matches 1a3, 4h10(1), 5B4, 5d4. No substantial microsatellite.
PCR Comments :
Length of sequence : 126 Consensus sequence is :
..
CCTCGAGGCG CGTGGGAAAA ACGACTTATA AGGACCTAGC TAGCTATATG
TATAGCGGGA GATCGGTCGG TGTAC
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wmc(5f1)
Plate reference : 5f1
WMC locus number : WMC Length of sequence : 447
Last updated : Tue, Apr 22, 1997 at 20:28
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. Matches 8h8. No substantial microsatellite.
PCR Comments :
Length of sequence : 447 Consensus sequence is :
..
CCGCATGTTG CATTTTTAAT TATCTTCCTA AATAGTTATG TCAGACAATT
ATTATCCACT ATCATCATCA TTATATTTAT ATCAGTCTTG CTATAAGTCT
GAGTCGATGC TATATATGTC CGTCGGATCT TACATCAAGA TCCGTGCAAA
ATTTTCTTTT CAGATTTTCT TTTTTCTCTC TTAAATCTCA GTCGAGTGAG
ACATAGCGAC ACCATAAAAC AGGGACTCGA GCGTCATTAA TGGAGAAGTT
GGGGGAGATG TGGGCGGCGG ATGGGCGTGG CGTGGTTCGG CGCGGCGGCG
GCGAGAAGAA GAAGAAGCAA GAGGAAGTGA AGGGAGTAGG GGAAATGGGC
GCGCGTGCTC CGCCGCCCCC CTCCTCCCGC CTACTTATAG GCTCGTGGGC
TGAGAAGCCG ATGGGGCGGA CGTGGGATTA ACTGTGCCCA GGACCCC
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wmc(5g1)
Plate reference : 5g1
WMC locus number : WMC Length of sequence : 266
Last updated : Tue, Apr 22, 1997 at 20:29
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 266 Consensus sequence is :
..
GCGGGGGCGG CGGTGGCGGC GGCGAGAGGA ACGAGGGTTG CTGCCTCGCG
GGGGAGACGC GGGCTAGGTC CCTCCCTCGC TGCCAGCTTG CTTCGCTCCT
TTTCTCGCTG CTCGCTAGCT TTTTTTCCTC AAGCGGGGGC GCTCGCTGTG
CCTGGCCCAC GACCACAGGG TCCATCCGTC AGCGACAGAG GCAAGGCAGG
GCGTTGGTGA AAACGGACAC AAGTTGGAAG TGTTGGCCGC ATGGATGGCC
TGAGAAGGAC CGGTAC
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wmc(5h1)
Plate reference : 5h1
WMC locus number : WMC Length of sequence : 303
Last updated : Tue, Apr 22, 1997 at 20:30
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 303 Consensus sequence is :
..
GTACTCCTCC TCCAGGTGCA CGCTCGCCGC CGGCCGCTCG CCGCCACGCA
CTTTTTTTTT ACCTACTCCA GTAACTTACT CCTCTGCAAG CTAGTAATCT
GAATTCGCCT GATAGAATCC GCGGCGTGCG CTCGGTCGAT TTTCTACGAT
TTCGCCTTAG CTTTCGTAAC GGTAAAAGGC GGCTGCTCTG CGGGACGCAC
GCCATATGCT CGAGACAATC TCCGGCAGGC TTGCTTTCCA CCTTGCACGA
ACCTGCTTAG CATCTTGGTT TTTTAAATCT GTGCACCACC TTGCATGAGC
ATG
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wmc(5a2)
Plate reference : 5a2
WMC locus number : WMC Length of sequence : 473
Last updated : Lun 30 oct 2000 at 16:59
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at both ends. Matches 3a1 (NB sequence 3A1 contains numerous ambiguities and a few differences), if PCR fails, try using primers to this sequence. (CT)15 28 to 57. Bases 130-344 (and beyond) match part of 4C1. Bases 331-473 match part of 14F5.1 Bases 411 to 455 show homology to 14f5.1 bases 81 to 125 (45 in longest run, maxScore = 83). Bases 27 to 67 show homology to 20h10 bases 64 to 104 (41 in longest run, maxScore = 35). Duplicate with 20h10, 5a2 has priority. Bases 51 to 106 show homology to TW1.2 bases 246 to 301 (complement) (56 in longest run, maxScore = 133). Bases 37 to 64 show homology to TW4g10.1 bases 72 to 99 (28 in longest run, maxScore = 24). Bases 75 to 137 show homology to TW7f11.2 bases 158 to 220 (63 in longest run, maxScore = 181).
PCR Comments :
Length of sequence : 473 Consensus sequence is :
..
GTACCAGTAG CTATGTGTTT GATCTTTCTC TCTCTCTCTC TCTCTCTCTC
TCTCTCTCGT GTTCTTGAGG TGATACGATC TTGATGTATC GCGAGCTTTG
CTATTATAGT TGGATCTTAT GTTTCTCCTC CCCCTCTTCT CTCTTGTAAT
GAATTGAGTT TCCCCTTTGA AGTAATCTTA TTGGATTGAG TCTTTAAAGA
TTTGAGAACA CTTGATGTAT GTCTTGCCGT GGATATCTGT GGTGACAATG
GGATATCACG TGATTCACTT GATGTATTTT TTGGTGATCA ACTTGCGGGT
TCCACCCATG AACCTATGCA TAGGGGTTGG CACATGTTTT CGTCGTGATT
CTCCGATAGA AACTTTGGGG CACTCTTTGA CGTTCTATGT GTTGGTTGAA
TAGATGAATC TGAGATTGTG TGATGCATAT CGTATAATCA TACCCACGGA
TACTTAAGGT GACATTGTAG TAC
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wmc(5b2)
Plate reference : 5b2
WMC locus number : WMC Length of sequence : 6
Last updated : Mon, Apr 21, 1997 at 9:50 am
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : No sequence obtained 21.4.97.
PCR Comments :
No sequence available for this clone
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wmc236(5c2)
Plate reference : 5c2
WMC locus number : WMC236 Length of sequence : 672
Last updated : Wed, Aug 27, 1997 at 21:06
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimed to insert at 5' end, cannot locate 3' end. (CA)10 399 to 418,
PCR Comments : 61C anneal, product;
Forward primer details :
TggTcAcTATggTAAccgAggA at 313 length 22 bases, Tm 63
Reverse primer details :
cccTgggTgATgAATAgAcTTT at 447 length 22 bases, Tm 61
Expected size of amplified fragment (Chinese Spring=) 156 bases.
Length of sequence : 672 Consensus sequence is :
..
GGCCTCTGCA TCTGGGCGAT GCATGCAGCC AATGTATGAG TCTAGACATT
GTGAAAAGTT AGAATCCAGC ATGGGTCAAC GACACAAGAG AGCAACAGCT
ATGTATCTAT ATCGATATAA ACAATTTGAT TATAATTTCA CTAAAATATG
TCCGATATTT AGTAGTTACC GTGGTGGATC GAAGGCGCAA CATTCACTGA
GTTAGCTCTA GGATTTTGAA CAGTAGGAGT TCACACGTAT ATATCCATAT
CGATATCATT TTCTTTCCAA AATTTGATTA CAACTTCCAC AATATACATG
TCAAATATTT CGTGGTCACT ATGGTAACCG AGGATCTCGC CACCACTTGC
CTCCTTCAGT CGAACGAAAA AGCCCATTCC ATATCCAAAC TCTTGCAACA
CACACACACA CACACACAGA CACACACACA CATTACATAC ATACATAAAG
TCTATTCATC ACCCAGGGTA AAGAATAAGT TATTCTTCAC CCGAGGTAAG
TTTACAATTA TTTCATAAAC AAATTACATT TGAAATACAA TTAGTTACAT
CCACATTGAT TCACTAAGTA AAATTTGGCA TAAGAAAAAC ATATATAGGT
CATAAGACAA GAAAAGTGTA TTTTAGTAGT CCACCGCTCG AGGATCTCTA
GAGTCGACTG CAGCATGAAG CA
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wmc(5d2)
Plate reference : 5d2
WMC locus number : WMC Length of sequence : 51
Last updated : Mon, Apr 21, 1997 at 9:51 am
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : No insert. No substantial microsatellite.
PCR Comments :
Length of sequence : 51 Consensus sequence is :
..
GAGGCGCGCC TCGAGGGATC CTCTAGAGTC GACCTGCAGG CATGCAAGCT
T
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wmc237(5e2)
Plate reference : 5e2
WMC locus number : WMC237 Length of sequence : 223
Last updated : Wed, Aug 27, 1997 at 21:20
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. (TG)6(TC)1(TG)6(TT)1(TG)6 at 119-158.
PCR Comments : 61C anneal, product;
Forward primer details :
TAAgTgAATcgATgggcgTggA at 97 length 22 bases, Tm 68
Reverse primer details :
cAgTgTgcAggggAAgcAgTgT at 200 length 22 bases, Tm 69
Expected size of amplified fragment (Chinese Spring=) 125 bases.
Length of sequence : 223 Consensus sequence is :
..
GTACGGACAC TTGTTCAAAA GCCGATGAGA AGCACAATGT CATTGGAACC
AAATGGGTCT TTGGAATAAG CAGGATGAAG ATGGGGAACT TGTAGATAAG
TGAATCGATG GGCGTGGATG TGTGTGTGTG TCTGTGTGTG TGTGTTTGTG
TGTGTGTGAC ATCGAGGTTT CCTGTAGGTC GGCAGTGGCT GGGCTGGAGA
CACTGCTTCC CCTGCACACT GCG
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wmc238(5f2)
Plate reference : 5f2
WMC locus number : WMC238 Length of sequence : 294
Last updated : Thu, Aug 28, 1997 at 11:58 am
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. Bases 87-270 match part of 5B12, and part of 5g10. (CA)22 96 to 139. Reverse primer is outside of homology with 5b12.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
TcTTccTgcTTAcccAAAcAcA at 70 length 22 bases, Tm 64
Reverse primer details :
TAcTgggggATcgTggATgAcA at 272 length 22 bases, Tm 69
Expected size of amplified fragment (Chinese Spring=) 224 bases.
Length of sequence : 294 Consensus sequence is :
..
ATCAACATAA ATGGAGTGGG CTTCTACCCA ACTCAATCAT GACAAGTCCT
CTGACTTGAC TCAAGTAGTT CTTCCTGCTT ACCCAAACAC ACATACACAC
ACACACACAC ACACACACAC ACACACACAC ACACACACAC TGGTTTGTAA
ACATGTGGAA GTAGCCCAAG AGCGGTTACC CAACTGTCCT TGACCGTGGA
CACGGCTATT TGAATAGTCT AACACTCTGC AGAGGTTGCA CACTTTACCC
ACAAGATACG AGAAGCTTTC GTGTCATCCA CGATCCCCCA GTAC
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wmc(5g2)
Plate reference : 5g2
WMC locus number : WMC Length of sequence : 197
Last updated : Jeu 27 Aož 1998 at 12:04
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. Matches 6e12. (GA)12 150 to 173, Bases 88 to 123 show homology to 10c7 bases 134 to 169 (complement) (36 in longest run, maxScore = 73).
PCR Comments :
Length of sequence : 197 Consensus sequence is :
..
GTACAACTTT TTGAAGTCAC CGAGCTCAAT TAATAACTTA AGAAAAAAGT
TAGATTACAG TGGAACCTAA TTAAAAGCTG TCACGAGCAA ATAAATAATT
CAACGGGTCC CACTTGTGCG TGTCCGCGTG TGTGTGTGCG TGTGTGTGTG
AGAGAGAGAG AGAGAGAGAG AGATAGAGAG ATACCCATCA GTCGATG
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wmc(5h2)
Plate reference : 5h2
WMC locus number : WMC Length of sequence : 430
Last updated : Thu, Aug 21, 1997 at 11:27 am
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 1-324 match part of 6F5. No substantial microsatellite.
PCR Comments :
Length of sequence : 430 Consensus sequence is :
..
CCTCTCACAC ATGCACGTTC AAGGTCTCCT ATGTCTCCAT ACATAGTTAA
TTACCCTCAA CCCTAAATCC ACATTGAATC GTTCTCGTCT TGTGTGCACA
TAACTTTCGC CTGAATGGGT AAAACGCACA CTCACACTTA ACAATCTCAT
TCTAGCTACC CCCTCTCACT CTTCCCCTAT ATCCCCGAAA CCAATAATAC
CACCCCTTCG TTTAATTCCC GCCTACATGC ACCATCGATA TATAGTAGTC
TTCCTCGGTG TCTCTTGAAG AAACACATTC TCTCGATGTC GACTCCACTC
ACGCGCACAC GCCTTCTCTT CCCTCTCTAC GGGCCTTTTC TCTCTCACCC
CCTGGTTGGT GGCCTCTGTC ATACACTATG ATTAAGCCAC GCACACTTAA
ATTACATCCG CCACCGAGGA CCCCGCGTCA
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wmc(5a3)
Plate reference : 5a3
WMC locus number : WMC Length of sequence : 227
Last updated : Tue, Apr 22, 1997 at 20:36
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. No substantial microsatellite.
PCR Comments :
Length of sequence : 227 Consensus sequence is :
..
CAGACCTTGC CGAGGCGGTG GAGCAGGCGC TCGAAGAACA GGGAGATGAG
GACGATGACG GAGCACACGG ACGCGACGAT CCACGTCGGC GTGCGCTCCA
GCGTTATCTC CGCCGCCCCG CCGCCGCCGG CTCCTCCAGC CATGGCCGCC
AAAGCCCAGC AGGAGCAGGT TGCCCGATCA GACCGAAGGG GACGCTACCT
GTCCTTAAAC TTTGACTTGA GCATTAG
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wmc(5b3)
Plate reference : 5b3
WMC locus number : WMC Length of sequence : 321
Last updated : Jeu 5 Nov 1998 at 15:49
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. Member of 1g1 family. (CA)9 22 to 39, (CA)8 95 to 110, (CT)8 79 to 94, Bases 154 to 235 show homology to 22f12 bases 183 to 264 (82 in longest run, maxScore = 97), duplicate, 5b3 has priority.
PCR Comments :
Length of sequence : 321 Consensus sequence is :
..
AGACTCCATC TCTCTCTCTC TCACACACAC ACACACACAA ACTAAGACTC
CATCTCTCTC TCTCCTCTCT CTCTCTCACT CTCTCTCTCT CTCTCACACA
CACACACACA CCACACACAC TAAGACTCCA TCTCACACAC ACATGCTCTA
GGTGGAGCAT TTGTTCCTAC CACCCTTCAT CCAACCTTAC CCGTATGATA
AACAATCACC TTTATTTACT TGCATAACAT GGACAGATTC CACTTTACTT
TAGTAGGTTG AACTTCTTGT TATTTTATTT TTGAACTTCT TGTTCCATTC
TTTAATAACG AGGAAAATTT G
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wmc(5c3)
Plate reference : 5c3
WMC locus number : WMC Length of sequence : 112
Last updated : Thu, Aug 21, 1997 at 4:16 pm
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. Matches 5E9. (CA)32 42 to 105,
PCR Comments :
Length of sequence : 112 Consensus sequence is :
..
GTACATGCTC TCTCTCTCCG ATTGTAGCAT ACCGGCAGCA TCACACACAC
ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC
ACACACTAAG AC
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wmc(5d3)
Plate reference : 5d3
WMC locus number : WMC Length of sequence : 443
Last updated : Thu, Aug 21, 1997 at 11:31 am
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. Member of 1g1 family. No substantial microsatellite.
PCR Comments :
Length of sequence : 443 Consensus sequence is :
..
GTACAGATGA TAAGTTTGCT GACTAGTAAA GTAAAGTGGA ATTTGTCCAT
GTTATGCAAG TAAATTAAGG TGACTGTTTA TCATACGGGT AAGGTTGGAT
GAAGGTTGGT AGGAACAAAT GCTTTGCCTA GAGCATGTGT CTGTGAGATG
GAGTCTTAGT GTGTGTGGGG TGTGTGTGTG AGAGAGAGAT AGAGAGAGAG
AGGAGAGAGA GAGATGGAGT CTTAGTTTGT GTGTGTGTGT GTAAGAGAGA
GAGAGATGGA GTCTTAGTGT GTTAGTGGGG GGTGTGCGTG CATGCGTGCG
TGTGTGTGTG TGTTTGTGTG TGTGTGAGAG AGAGGGAGAG ATGGAGTCTT
TGTCTGTGTG TGGGGGGGTG CGTGCGTGTG TGTGTGTGCG TGTGTGTGTT
TGTGTGTGTC GCGGGGTCCT CTGTGGCGGA TGTAATTTAA GTG
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wmc(5e3)
Plate reference : 5e3
WMC locus number : WMC Length of sequence : 335
Last updated : Lun 8 FŽv 1999 at 10:07
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimed to insert at both ends. Matches 7A2, 2c8, 6a6, 6b6(GT)13 202 to 227, Bases 168 to 193 show homology to 22a9 bases 121 to 146 (complement) (26 in longest run, maxScore = 25). Bases 164 to 219 show homology to 23f4 bases 11 to 66 (56 in longest run, maxScore = 86), true duplicate, 5e3 has priority. Bases 259 to 335 show homology to 24e6 bases 230 to 306 (77 in longest run, maxScore = 177), duplicate, 5e3 has priority. Bases 150 to 225 show homology to 21b9 bases 3 to 78 (76 in longest run, maxScore = 42). Bases 138 to 213 show homology to 26c2 bases 283 to 358 (76 in longest run, maxScore = 136).
PCR Comments :
Length of sequence : 335 Consensus sequence is :
..
GGGGAGGAGT CAGTCAGCCG TCATCACATC ACCCTGCTTC CAAATGACCC
CACATTCTCT AGCGCAGTGT GGTCGCCGTC TTCGATCTGC TCGATGCCCT
CTTTGAAGAT TGAGGTGTTG TGCATGTTGG GGTGCATAGA AGCACAAGCG
AGAGTGGTCG CCGTATAACC TTGGATGGGG ATGAATTGTG TGCTCGGGGG
AGTGTGTGTG TGTGTGTGTG TGTGTGTTGT GTTGCGTGTG TCTGTGTGTG
TGTGTGTCAG ATATTGAGAG AAAACAAACC TAAGGAGAGA AATGGGTATT
CACGAAGAGA TTGTGCGGGC CTTGAGGTGG GCAGG
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wmc239(5f3)
Plate reference : 5f3
WMC locus number : WMC239 Length of sequence : 185
Last updated : Thu, Aug 28, 1997 at 2:08 pm
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end.(GT)13 43 to 68. Forward primer Tm is estimation after adding 3 bases to 5' end.
PCR Comments : 51C anneal, product;
Forward primer details :
GTAccAAgAcTTAgATcTTTTTTAc at 4 length 25 bases, Tm 54
Reverse primer details :
TTcAgcTTTTTTTATgggggTT at 131 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 149 bases.
Length of sequence : 185 Consensus sequence is :
..
GTACCAAGAC TTAGATCTTT TTTACCTAAA GAAAAGGTGA TTGTGTGTGT
GTGTGTGTGT GTGTGTGTTG CGTGTGCATG CCTCTCGTCG ATGCAAGCTA
GTTTGACCGG TGTCTCAGCT CTCTCAGCTA AACCCCCATA AAAAAAGCTG
AACCCTCATA ATCCCGTGCG ATGCAGAGGG AGTAT
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wmc240(5g3)
Plate reference : 5g3
WMC locus number : WMC240 Length of sequence : 477
Last updated : Mer 10 FŽv 1999 at 14:39
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end, and to insert at 3' end. Bases 340 -441 (complement)ie. 5' side of microsatellite match part of 9d1. Bases 2-176 match part of 4A6 (complement). (CA)11 412 to 433. Forward primer is outside of regions that match other sequences. Bases 405 to 433 show homology to 10A1.2 bases 35 to 63 (complement) (29 in longest run, maxScore = 42), true duplicate with 10a1.2, 5g3 has priority. Bases 204 to 233 show homology to 25c10 bases 34 to 63 (30 in longest run, maxScore = 60). Duplicate with 25c10, 5g3 has priority. Bases 330 to 379 show homology to 22e4 bases 62 to 111 (complement) (50 in longest run, maxScore = 265). Duplicate with 22e4, 5g3 has priority.
PCR Comments : 61C anneal, product;
Forward primer details :
TAAAcgAgAggATgcAccgAcT at 303 length 22 bases, Tm 65
Reverse primer details :
cAcgTTAgAAggTgcAAcAggA at 454 length 22 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 173 bases.
Length of sequence : 477 Consensus sequence is :
..
GTACCTCCTT TTGCCAAAAG CGTGGGACAT CCAGCAGTCC TACCACCTCA
GTAATAAAGA CCAATGAGGC GCCAAATCAC ATAGACCCAG CAGTAAGTTG
GACAGACGAA GCAACCATCA CTCTTGCGCC AGTGAGAGGT CGCGTCCGCT
CTGCCCGGGC ATGAATGCGG CACCGATTCT TTGGAGTGGC GCTGACCGTT
TCAGGCGGGA AGCGCGCGCG GGCGATGGAG GGGCTTTGGG TGGGCCAGGC
TGGTCAGGAG CGGGCGTGGA AGCTGTCCGC ATGTCCCTAC CGGACACGCC
CGTAAACGAG AGGATGCACC GACTCTCGCG GCTAAAATCA TACACTACAC
AACATCTCTC TGTAGGAGTA GGTCGATCTG TCACTCTCTC TAACACAAAC
ATGCTGTTAA ACACACACAC ACACACACAC ACACGCACAC GCATGCACCT
TGGTCCTGTT GCACCTTCTA ACGTGAC
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wmc241(5h3)
Plate reference : 5h3
WMC locus number : WMC241 Length of sequence : 936
Last updated : Lun 6 mars 2000 at 12:04
Owner : Sharp, Camden Date at Agrogene : 21.4.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at both ends. Multiple inserts in this clone (2) joined at 430-447 by linkers.(CA)14 170 to 197. Bases 901 to 936 show homology to tw12.2 bases 102 to 137 (36 in longest run, maxScore = 34).
PCR Comments : tested 61C anneal, no product; 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
cgAcATgAgccAgAggAAAAAc at 21 length 22 bases, Tm 65
Reverse primer details :
gTATcAcAAgAgAgcAAcgcAg at 343 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 344 bases.
Length of sequence : 936 Consensus sequence is :
..
GTACTACTGC TGAGTCGGAC CGACATGAGC CAGAGGAAAA ACTCCGCATC
TATTCTTCTC TTCTCGCAAG TTCTCTATAC TAGAAGAACG CCCGTGCGTT
GCAACAGGGC CATATTACTT TAAGAGTTCA ATATTACGAC ATTGACGACC
TTTTTTACCA TCAAATTCTC ACACACACAC ACACACACAC ACACACACTC
TCTCTCTCTC CCTCTCCCTC TTCCTNACTC TCTCTCCCTC TCTCTCTAAC
ACACACACAC ACATAGCCTA TTCTCCCCGG CAGTAAAACT TACTCAGTTG
GCAATAATGT GCTAGTTCAG ACCGGTTCCT CGGTTACGTC ACCTGCGTTG
CTCTCTTGTG ATACTCTGTC AATTCTTGGT CCTCTGTCAG TTCTTGTTGG
CCCTCTGTCA ATTCTTGAGT TCTTGTTGTT AGTCCACGCG TGGACTAGGG
AGCCTCTTGT ATCTCTGCTC GAACAGGGTC GAGTTCGCAG GACAGATGCC
TTCCTTTGAC GAGTGGGGGT TGCGCCCGGT TGGCCTTGTG GGTCCTCGCG
AGAATCATGT CGCCGTGGCT CCCCTCCTCG CCGCCAGCAT CGAGCTTGCC
CCGAGAGTGG TCGCAGGGGG GAAGCGTCGC TTGAGGCAGG AGGCTCGGGT
GTCGAGGTTG TAGGACCTTG AAGTATGTCT AGAGGGGGGG TGATTAGACT
ACTTGACCAA TTAAAAACTT AACCTTTTGC CAATTTTAGA GTTTGGCAGA
TTTTAGCTAT CTTAGGACAA GTCAAGCAAT CATCACACAA TTCAACCAAG
CATGCAAAGA GTATATAGGC AGTGGAAATT GAAGCATGCA ACTTGCAAGA
AAGTAAAGGG AAGGGTTTGG AGGATTCAAA CGCAATTGGA GACACTGATG
TTTTTGGCGT GGTTCCGATA GGTGGTGCTA TCGTAC
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