Wheat microsatellite WMC 25/06/01
wmc(4h3)
Plate reference : 4h3
WMC locus number : WMC Length of sequence : 165
Last updated : Tue, Aug 26, 1997 at 1:39 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. (GT)39 68 to 145. No room for primers.
PCR Comments :
Length of sequence : 165 Consensus sequence is :
..
GTACAACAAA ACTGTTCGCG TATGATCATG CTTCCGATTT GAACAACAAA
TTTAAAAACA CTTTAAAGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTAAATG
CNTGTTANTC CACGC
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wmc(4a4)
Plate reference : 4a4
WMC locus number : WMC Length of sequence : 6
Last updated : Wed, Jun 18, 1997 at 5:26 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : No sequence obtained 9.5.97
PCR Comments :
No sequence available for this clone
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wmc259(4b4)
Plate reference : 4b4
WMC locus number : WMC259 Length of sequence : 186
Last updated : Wed, Sep 17, 1997 at 1:29 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : No trimming done to sequence. (GT)14 117 to 144.
PCR Comments : tested 61C anneal, no product; 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
gTcggAgcTgAcTTgATTAcAT at 3 length 22 bases, Tm 60
Reverse primer details :
TgcAcAgTAgATAgcTAgcggT at 160 length 22 bases, Tm 61
Expected size of amplified fragment (Chinese Spring=) 179 bases.
Length of sequence : 186 Consensus sequence is :
..
GTGTCGGAGC TGACTTGATT ACATAGCGCC GAAGAGAGAG TTGTATGTGT
GTGTGTGTGT GATGGCGTGC TCTCAACCAC GTGTAGTCGA TCTATACGAT
AGATAGAGGA GAAGTTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGCTACA
CATCGAGTTA CCGCTAGCTA TCTACTGTGC AGATCA
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wmc(4c4)
Plate reference : 4c4
WMC locus number : WMC Length of sequence : 174
Last updated : Mon, Aug 25, 1997 at 5:31 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : No trimming done to sequence. Member of 1g1 family. No substantial microsatellite.
PCR Comments :
Length of sequence : 174 Consensus sequence is :
..
GANTNCTCCG AGGCGCGTGG CATTAACAGG TGGATAAGTT TGCTGACTAC
TAAAGTAAAG TGGAATTTGT CCATGTTATG CAAGTAAATA AAGGTGATTG
TTTATCATAC GGGTAAGGTT GGATGAAAGG TGGTAGGAAC AAATGCCCCG
CCTAGAGCAT GTGTGTGTGA GATN
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wmc(4d4)
Plate reference : 4d4
WMC locus number : WMC Length of sequence : 357
Last updated : Tue, Aug 26, 1997 at 1:41 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : No trimming done to sequence. Complement matches 6A8. (GA)9 185 to 202, (GT)8 119 to 134, (GT)13 159 to 184, (GT)8 263 to 278.
PCR Comments :
Length of sequence : 357 Consensus sequence is :
..
CGCGCNNNCN NGANTCNTCC GAGGCGCGTG GCCTAACACC ATCATTGCCA
ACTCGTTTTT TTATAAGGGT AAAGATGATA AGTTTGCTTA CTACTAAAGT
AAACATATGT GTGTGTTTGT GTGTGTGTGT GTGTGAGAGA GAGAGAGATG
AAGTTTTTGT GTGTGTGTGT GTGTGTGTGT GTGTGAGAGA GAGAGAGAGA
GATGGAGTCT TAGTGTGTGT GTGTATGTGT ATTTTGTGTG TGTGGGGGGT
GGGTGGGTGT GCGTGTGTGT GTGTGTGTNN GTGTGGGTGT GACANACACA
CATGGANTCT CACTGTGTGT NCTCCNCNCG CCNCNAGGGA TCCNCNCNNA
CTCNACC
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wmc260(4e4)
Plate reference : 4e4
WMC locus number : WMC260 Length of sequence : 115
Last updated : Mar 30 mai 2000 at 9:54
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. (GA)26 42 to 93. Bases 13 to 33 show homology to TW4b09.2 bases 277 to 297 (21 in longest run, maxScore = 27).
PCR Comments : tested 51C anneal, no product;
Forward primer details :
cAAgATcgTgccAAATcAAg at 5 length 20 bases, Tm 61
Reverse primer details :
gTAccAgTAgcTATgTgTTAgatctc at 90 length 26 bases, Tm 57
Expected size of amplified fragment (Chinese Spring=) 111 bases.
Length of sequence : 115 Consensus sequence is :
..
TCATCAAGAT CGTGCCAAAT CAAGAACACG AGAAAGAGAA AGAGAGAGAG
AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGATCTAACA
CATAGCTACT GGTAC
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wmc(4f4)
Plate reference : 4f4
WMC locus number : WMC Length of sequence : 162
Last updated : Lun 8 FŽv 1999 at 10:07
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. (CA)11 38 to 59. bases 38-162 (ie. 3' side of microsatellite) match 6c12 (member of 1g1 family). No primers designed to this. Bases 119 to 159 show homology to 22b3 bases 6 to 46 (complement) (41 in longest run, maxScore = 54).
PCR Comments :
Length of sequence : 162 Consensus sequence is :
..
GTACCGCGTC ATTTCTTCAA ACATCCTGCG CCCCCTCCAC ACACACACAC
ACACACACAC CAAAACCTCC TCGGGCGTGC GCGCGCACGC ACACACACAC
ACACCCCCTC CCTCGCTCGA AACCCTAGCA AAGTCCCTGC CGCCGCCGCC
ACCGCAAGGG CC
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wmc(4g4)
Plate reference : 4g4
WMC locus number : WMC Length of sequence : 220
Last updated : Tue, Aug 26, 1997 at 1:44 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end, duplicate 6a11, 11e5, 8g11, 2e11,4g4 . (CA)9 36 to 53, (CT)8 20 to 35.
PCR Comments :
Length of sequence : 220 Consensus sequence is :
..
CCATCTCTCT CTCTCTCTCC TCTCTCTCTC TCTCTCACAC ACACACACAC
ACACTACACA CATCAAGACT CCATCTCACA CACACATGCT CTAGGCGGAG
CATTTGTTCC TACCATCCTT CATCCACCTT ACCCGTATGA TAAACAATTA
CCTTTATTTA CTTGCATAAC ATGGACAAAT TCCAGTTTAC TTTAGTAGTC
AGCAAACTTG TCGTCTGTAC
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wmc(4h4)
Plate reference : 4h4
WMC locus number : WMC Length of sequence : 0
Last updated : Mar 30 mai 2000 at 9:54
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end. No insert, Puc sequence only. No substantial microsatellite. Bases 181 to 285 show homology to 17d8.2 bases 1 to 105 (105 in longest run, maxScore = 210). Bases 174 to 222 show homology to 26b6 bases 31 to 79 (49 in longest run, maxScore = 42).
PCR Comments :
Length of sequence : 0 Consensus sequence is :
..
GTACCTATAA TGTATTGGGC CCGCCTTCTA ATTCCTTGTA TAGTTNAGAT
CCATGGCCCA TCTTTTTACA TCATATATAC GTGCATAGGC ACGAAGAGCA
ATACATCGTG CAATCATACA TCATACATGG TATCAGTTTC TGGGTTCTAA
CCCTAGCGTT CCACCGCCGC CGCCACGCGC CTCGAGGGAT CCTCTAGAGT
CGACCTGCAG GCATGCAAGC TTGGCGTAAT CATGGTCATA GCTGTTTCCT
GTGTGAAATT GTTATCCGCT CACAATTCCA CACAACATAC GAGCCGGAAG
CATAAAGTGT AAAGCCTGGG GTGCCTAATG AGTGAGCTAA CTCACATTAA
TTGCGTTGCG CTCACTGCCC GCTTTCCAGT CGGGAAACCT GTCGTGCCAG
CTGCATTAAT GAATCGGCCA ACGCGCGGGG AGAGGCGGTT TGCGTTATTG
GGCGCTCTTC CGCTTCCTCG CTCACTGACT CGCTGCGCTC GGTCGTTCGG
CTTGCGGCCA GCGGTATCAG CTCACTCAAA AGCGGTATAC GGTTATCCAC
AGAATCAGGG GATAACGCAG GNAAGAACAT GTGAGCAAAA AGGCAGCAAA
AGGC
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wmc(4a5)
Plate reference : 4a5
WMC locus number : WMC Length of sequence : 139
Last updated : Wed, Sep 17, 1997 at 2:05 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : No trimming done to sequence. (GT)26 52 to 103. No room for primers (NB ecoR1 site at 24-28 may be in vector)
PCR Comments :
Length of sequence : 139 Consensus sequence is :
..
AGAGCAGAAT CCCAAAGTCA TAGGATCCTC ACAGTGTTTA CGTACGTTCA
CGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TGTAGAGGAA CCTCATATAA TATAAACATC ATATAATGA
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wmc(4b5)
Plate reference : 4b5
WMC locus number : WMC Length of sequence : 177
Last updated : Wed, Sep 17, 1997 at 2:05 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : No trimming done to sequence. (CT)11 41 to 62. Bases 42-111 (ie. 3' side of microsatellite) match part of 7F8. Too difficult to design primers with high enough Tms.
PCR Comments :
Length of sequence : 177 Consensus sequence is :
..
TCACAGACCT AACTTCTTAT ACTCTCTTTC TCTCATCTAT CTCTCTCTCT
CTCTCTCTCT CTGTCTCGTT AGATTTGACT CCTACTGCTC TCGTCACATA
CATACAATCT TGACAGCGAC TATGCTAGCT GCCATCTGCG CAAGCTGCTC
TCTACACGTG CATGCCACAT GGAGAGA
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wmc(4c5)
Plate reference : 4c5
WMC locus number : WMC Length of sequence : 6
Last updated : Wed, Jun 18, 1997 at 5:27 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : No sequence obtained 9.5.97.
PCR Comments :
No sequence available for this clone
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wmc(4d5)
Plate reference : 4d5
WMC locus number : WMC Length of sequence : 6
Last updated : Wed, Jun 18, 1997 at 5:27 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : No sequence obtained 9.5.97.
PCR Comments :
No sequence available for this clone
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wmc261(4e5)
Plate reference : 4e5
WMC locus number : WMC261 Length of sequence : 232
Last updated : Wed, Sep 17, 1997 at 2:15 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. (GT)12 68 to 91.
PCR Comments : 61C anneal, product;
Forward primer details :
gATgTgcATgTgAATcTcAAAAgTA at 37 length 25 bases, Tm 62
Reverse primer details :
AAAgAgggTcAcAgAATAAccTAAA at 122 length 25 bases, Tm 60
Expected size of amplified fragment (Chinese Spring=) 110 bases.
Length of sequence : 232 Consensus sequence is :
..
GTACTCCATA TTTACTAAAT TTCACTGAAT TTACTTGATG TGCATGTGAA
TCTCAAAAGT ATCCATAGTG TGTGTGTGTG TGTGTGTGTG TGCTCGAGTG
TAAGAATGCA AATGGGCACC TTTTAGGTTA TTCTGTGACC CTCTTTATTT
CAACTAAATG AACTGGTTTG AAGCTCTAGT ATGCTTAGAG TGACTGGTTT
AATTAGTCTC TTAATTGACA AGTTAACTGG AC
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wmc(4f5)
Plate reference : 4f5
WMC locus number : WMC Length of sequence : 365
Last updated : Mon, Aug 25, 1997 at 5:49 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end. PUC sequence trimmed off 3' end 25.8.97. No substantial microsatellite.
PCR Comments :
Length of sequence : 365 Consensus sequence is :
..
GTACCAACNG NAATACATGC ACAATGGACC GCCCACCCAA CGTTATATTA
CACCGAGCCG TCGCCACATG ACACTGTTGA ACAGGGCACA TCCGTCGTCT
CTCTGTGCTC GATGCCT
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wmc262(4g5)
Plate reference : 4g5
WMC locus number : WMC262 Length of sequence : 312
Last updated : Wed, Sep 17, 1997 at 2:43 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
PIC Value : 0.76
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. (GA)29 86 to 143.
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
gcTTTAAcAAAgATccAAgTggcAT at 9 length 25 bases, Tm 65
Reverse primer details :
gTAAAcATccAAAcAAAgTcgAAcg at 182 length 25 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 198 bases.
Length of sequence : 312 Consensus sequence is :
..
CATACAAAGC TTTAACAAAG ATCCAAGTGG CATATTTTTC CTTTTCTAGT
TGATAGTCAA TTAGCTNATT CAACTCAGGT GAGCAGAGAG AGAGAGAGAG
AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGGGAGGG
AGAGAGAGTC TGTTGATAGT GATATGTTCT TCGTTCGACT TTGTTTGGAT
GTTTACAGGT TTGATCCTTC CGATCTACAA CTTTCTTAAT CGCCGATGGT
CGCTGCTCTG GTGCGCTAGT CCTACGGGGC CTTAGCACGA TAACTTTCCG
ACTGTCTAGT AC
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wmc(4h5)
Plate reference : 4h5
WMC locus number : WMC Length of sequence : 6
Last updated : Wed, Jun 18, 1997 at 5:28 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : No sequence obtained 9.5.97.
PCR Comments :
No sequence available for this clone
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wmc(4a6)
Plate reference : 4a6
WMC locus number : WMC Length of sequence : 347
Last updated : Tue, Aug 26, 1997 at 12:03 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 3' end, small linker like sequence at 321-328. Bases 172-347 (complement) match part of 5G3. No substantial microsatellite.
PCR Comments :
Length of sequence : 347 Consensus sequence is :
..
GATTCTCGAG GCGCGTGGAN AGTGGATAAC GATTTTAGCC GCGAGAGTCG
GTGCATCCTC TCGTTTCCGG GCGTGTTCGG TAGGGACAGA CGGATAGCTG
CCAGGCCCGC TCCTGACCAG CTTGGCCCAC CCAAAGCCCC TCCATCGCCC
ACGCGCGCTT CCCGCCCGAA ACTCGGTGCC GCATTCATGC CCGGGCAGAG
CGGATGCAAC CTCTCACTGG CACAAGAGTG ATGGTTGCTT CGTCCGTCCA
ACTTACTGCT GGGTCTATGT GATTTGACGG CTCATTGGTC TTTATTACTG
AGGTGGTAGG ACTACTGGAT GTCCACGCTT TTGGCGAAAG GAGGTAC
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wmc263(4b6)
Plate reference : 4b6
WMC locus number : WMC263 Length of sequence : 398
Last updated : Wed, Sep 17, 1997 at 2:57 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : Trimmed to insert at 3' end. (GGC)6 171 to 188.
PCR Comments : tested 61C anneal, no product; 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
ggAggAgATTTAgTgccTgAcc at 56 length 22 bases, Tm 63
Reverse primer details :
ATcAgAcggccgAAAgTTAgAc at 348 length 22 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 314 bases.
Length of sequence : 398 Consensus sequence is :
..
GATTCTTCGA GGCGCGTGGA TCACGGCACC GGGGGGCGCG TCGGGGAGAG
GCGATGGAGG AGATTTAGTG CCTGACCTTG GTCGGCGACC TTGACGGCCT
GGGGGAACTC GCCGGCCTCG ACGTGGCGGT GGAGCGCCGC GAAGAGGTCC
TCCACGGAGA CCGGCTCCGC GGCGGCGGCG GCGGCGGCCT TGGATTTGGG
CGGCATCGGG AGGTCGGGGG GAGATGGCTC ACGAGGAGGG CGGAGGCTGC
GAAAAAACCC CCAGTGCGAC AAGTTGTTTC TTTTTCACAA ATCCATCCCC
CTTTCTTGTT CCTATTTAGT ATAAACCGCT CCTTTTGCTT CGGGAGTGTC
TAACTTTCGG CCGTCTGATT TTGTATTTGG TTTAGGCTGT ATTTTTTG
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wmc264(4c6)
Plate reference : 4c6
WMC locus number : WMC264 Length of sequence : 369
Last updated : Thu, Jun 11, 1998 at 11:26 am
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
PIC Value : 0.79
Comments : No trimming done to sequence. (GA)16 81 to 112.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
cTccATcTATTgAgcgAAggTT at 55 length 22 bases, Tm 61
Reverse primer details :
cAAgATgAAgcTcATgcAAgTg at 166 length 22 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 133 bases.
Length of sequence : 369 Consensus sequence is :
..
GATTCTCGAG GCGCGTGGAG CAGAATGAGA GATGCATGCA AAGATTTGTG
TTCTCTCCAT CTATTGAGCG AAGGTTTGGG GAGAGAGAGA GAGAGAGAGA
GAGAGAGAGA GAGTATCCAT GAGCTCCAAT TAGAGTTGGC TAGCTCGGTC
TTCTCTCCCT TCCTTCACTT GCATGAGCTT CATCTTGTAT TCATGGAGGA
CGAGCGCCCA ACTCATGAGC TGCATGCAAA GATTTGTGTT CTTCCCATCC
ATTGAGCGAT AAGATAGAGA ACATGGTGTG TTAGTTCCAC CGCCGCCCTC
GCAAGGGATT CCTCTAAATT CAACCTGCGG GCTTCCAGCC TGGGGTTATC
CTGGGCCTTA CNGNTTCCC
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wmc265(4d6)
Plate reference : 4d6
WMC locus number : WMC265 Length of sequence : 304
Last updated : Thu, Jun 11, 1998 at 11:26 am
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : Trimmed to insert at 3' end. (GT)18 151 to 186. Bases 47-167 (ie. 5' side of microsatellite) match part of 1B3.
PCR Comments : 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
gTggATAAcATcATggTcAAc at 15 length 21 bases, Tm 57
Reverse primer details :
TAcTTcgcAcTAgATgAgccT at 257 length 22 bases, Tm 59
Expected size of amplified fragment (Chinese Spring=) 263 bases.
Length of sequence : 304 Consensus sequence is :
..
GANTCTCGAG GCGCGTGGAT AACATCATGG TCAACCCCCA CCCCCCTCTT
TTGCTTCCGG TCAAATGTGG ACCGTGTGCG GGCCAATAGA TGTGTGCTTG
TGGCGTGAGA TGGGTGAGAC CACATACGAA CCACACCCGC AGGTGGCCCA
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGATA TTTATAATAA
CTAAATCACA AATTTGATGT GGCACATGTG CATTGCAAAT TAACCAGACA
TCCTCGAGGC TCATCTAGTG CGAAGTAGTA CACATCAATC ACATGTATAT
CAAA
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wmc(4e6)
Plate reference : 4e6
WMC locus number : WMC Length of sequence : 220
Last updated : Tue, Aug 26, 1997 at 12:09 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 3' end. Matches 6F5. No substantial microsatellite.
PCR Comments :
Length of sequence : 220 Consensus sequence is :
..
GANTCTCGAG GCGCGTGGAT ATGAGAGGGG GGTAGCTACA AGGAGATTGT
TAAGTGTGAG TGTGTGTTTT ACCCATCCAG GCGGAAGTTA TGTGCACACA
AGAAGAGAAC GATTCGATGC GGCGTTAGGG TTGAGGGTAA TTAACTACGT
ATGGAGACAT AGAGACCTTC AACATGCATG TGTGAGAGGG CCCGCCCTGA
GCTTGTGCTT CTCCATGTAC
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wmc(4f6)
Plate reference : 4f6
WMC locus number : WMC Length of sequence : 288
Last updated : Fri, Jul 4, 1997 at 5:06 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 288 Consensus sequence is :
..
TGCGTCTCGC GCACCCCGGG ATACGCCGCC TTGGCCTCCT CCAGGCTGAG
CGGGCAGATC TTCTTGGCCG CCGCCCTGAA TGCCCCCGGG CTGGACTTGG
CGCTCGGGGC GTCCTTCTTC ACCCACCCGA CCTGGGTGGC CTTGCCGTAG
AAGAAGGAGG CCGCATATAA AGTGGCCTGC CCAGCGCCAC CGCCGCCGCC
CCACACGCCG CCGAAGGTGC AGTTCTTGCT CGCGCACGGC GCGTCCAGCT
TGAGCGCCTT GGCCACCTCA TTCCTGCACT TGGTGTAC
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wmc(4g6)
Plate reference : 4g6
WMC locus number : WMC Length of sequence : 493
Last updated : Fri, Jul 4, 1997 at 5:06 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : Trimed to Rsa1 at 5' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 493 Consensus sequence is :
..
GTACTTAATA CGTTCATACT AGTAGTATAA TTTGGGTCAG TCGATTTGTG
AAAGAAGTTC GATGGAGTGA AGGAAGAAGA CGGCAGGGGG CCCATGATCC
TTACGAGTGT TGGGTGTGGA ATGCAGTTCG CCGAAAAAAT GGATCGTGCC
CGGGGTTAAA CGGATGGTGG GGGTGGGGGA GCATGGAGGT GGTAGGCGGT
TCAGGGGAAG GCGCGGCGGT TGCGGCAGGC GGTTANGCGT GTGGCGGGCT
GAAAAGATGA ACCGTGCATC TATTTCGGAG GTTGAAGAAG CCCTTCTAGC
CATCCATGTT GCATCAAATG GCTCACTAGA GTCAACTGAC CCAAATTGCT
CCTTCAGATT GCAGGATCCA CGTGGCATTC AAGGTCTAGA ANGTAGATTC
CGCGTCCGCA CCCAGTTTGT GGGCTCGACA CGCGCGCGAC CAGCTTTCGC
CGCGACGGGC ACCATGCCCG CCTCCTCCAC GCGGGCGGAG ACA
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wmc(4h6)
Plate reference : 4h6
WMC locus number : WMC Length of sequence : 525
Last updated : Tue, Aug 26, 1997 at 12:16 pm
Owner : Gupta, Meerut Date at Agrogene : 9.5.97 Public Domain : Yes
Comments : No trimming done to sequence. Bases 24-255 (complement) (between 2 small microsatellites) match part of 5d6. No substantial microsatellite.
PCR Comments :
Length of sequence : 525 Consensus sequence is :
..
GAATTTTCNG AGGCGCGTGG GACTAACTTC ACAACATGCT CAAACTCACA
TAATCCCAGT CAAATGAGAA TCTAAATGCA TTTCATAGTT ATTTCTTTGT
AGGATGCAAC AAAAACAATC ATAACTCCAC ATCAGCCATT ATAGAAGAAA
CATTTTGACA TATCCCAATG TGTGAATGAA ACGTGCAGAG AGAGCTTTTG
AAGATGGAGC AGATAGGGTG GGAAATATTG TATGTATGTG GACGAGAGAG
TAGGAGACAA ACCTAACGGG AAATAGAGAG AGAGATAGAG AGAGAAAGAG
AGAGGAAGAA GTTAGGTCTG TGACAAAGAT GGAGACATGT AATATACGTG
AGATGCGTGT GCATCCGGAT TCTGTATACG TGGAAGGAGA AGAGACAACA
GGTTTGATGA GAGAGCTGGA AAAACATGGA CGAGAGGGGA AGGATCTCGT
GGGTTGAGGG ACTGATAAAT TTGTGCGGGG GAGAGAGGGA TTGGTAATTT
TGTGCGANAG ANAGAGGGTG GGGGA
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wmc(3A7)
Plate reference : 3A7
WMC locus number : WMC Length of sequence : 161
Last updated : Jeu 27 Aož 1998 at 12:06
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. Close relative of 5b9 bases 25-150 (complement)match part of 5b9 No substantial microsatellite. Bases 44 to 87 show homology to 10c12 bases 120 to 163 (44 in longest run, maxScore = 39).
PCR Comments :
Length of sequence : 161 Consensus sequence is :
..
CGACTGGCTT CTCTCTCATA CATACACACA CAAACACACA CATACACTAC
CCGACACCGA AGGAGTAGGG TGGCACCTCG ATCTTGACAG TAATCTATCT
ACTCCTATTT CAAACACACA CACACATACA CACACACTCG ACTACCTCTA
GGGATCATGG T
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wmc(3b7)
Plate reference : 3b7
WMC locus number : WMC Length of sequence : 362
Last updated : Tue, Jul 29, 1997 at 9:41 am
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. No substantial microsatellite.
PCR Comments :
Length of sequence : 362 Consensus sequence is :
..
GGCTACGGCG ATTTGTTGTG AGGTGAGATG GATACCGCAA GACAAAGAAC
AATTTTGAGA TGTGCGATTG GATCAAAATA CTGCCCCCAT TTGTTGCCAC
CGTGCCTATT TTCGAGTCAT CAATGATTAT GAATTTCCTC AATCCTCGAG
TCATCAAGCA CGCAGGCAGC AAACATCGCA CGGGAGGACC GGAGGAGAGC
ACAATTGGGG AAGGAAGTAA CCTTGATCTG CCCCACGCGG CGGGCGGCGG
CACGGGAGAC GGCGTTTACA GTCGGGGTCG AGGGCGAATC CAGGCGGTGG
CGAGCGACTC CAGGCGGTGG CGAGGCGATT CCAGGCGGCG GCGACGACGG
CGGGATCGCG GT
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wmc(3c7)
Plate reference : 3c7
WMC locus number : WMC Length of sequence : 161
Last updated : Tue, Aug 26, 1997 at 3:54 pm
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. Duplicate of 3a7 No substantial microsatellite.
PCR Comments :
Length of sequence : 161 Consensus sequence is :
..
CGACTGGCTT CTCTCTCATA CATACACACA CAAACACACA CATACACTAC
CCGACACCGA AGGAGTAGGG TGGCACCTCG ATCTTGACAG TAATCTATCT
ACTCCTATTT CAAACACACA CACACATACA CACACACTCG ACTACCTCTA
GGGATCATGG T
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wmc266(3d7)
Plate reference : 3d7
WMC locus number : WMC266 Length of sequence : 635
Last updated : Lun 9 Nov 1998 at 9:47
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. Multiple inserts (2) joined 272-290 by linkers. First insert is member of 1g1 family. (CA)15 429 to 458, (GA)15 212 to 241, (CT)12 405 to 428. Bases 516 to 568 show homology to 10a3 bases 72 to 124 (complement) (53 in longest run, maxScore = 125), duplicate, 3d7 has priority.
PCR Comments : 61C anneal, product;
Forward primer details :
ATgTATTTAcgAgcATcgAccg at 377 length 22 bases, Tm 63
Reverse primer details :
ATggTTAcTcAgcccAcATTcA at 604 length 22 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 249 bases.
Length of sequence : 635 Consensus sequence is :
..
ACAAATGATA AGTTTGCTAA CTACTAAAGT AAAGTGGAAT TTGTCCATGT
TATACAAGTA AATTAAGGTG ATTGTTTATC ATACAGGTAA GGTTGGATGA
AGGGTGGTAG GAACAAATGC TCTGCCTAGA GCACGTGTGT GTGAGATGGA
GTCTTAGTGT TTGTGTGTGT TTGTAGGTGT GTGTGGGCGG TTTGTGTGTG
TGTGTGTCTG TGAGAGAGAG AGAGAGAGAG AGAGAGAGAG ATGGAGTCTC
TGTGTGCGTG TGCGTGATGG AGTAGTCCAC GCGTGGACTA GCAAGTTCAG
TGTGCTATGA TGTTCTATAT GATTGTGTCA ACTATATAAG TTTTTACTAA
GCATCAGCAA TGCATATGGC TGAAAGATGT ATTTACGAGC ATCGACCGAT
GGGTCTCTCT CTCTCTCTCT CTCTCTCTCA CACACACACA CACACACACA
CACACACAAG TGGGACTCGT TGAATTATTT ATTTGCTCGT GACAGCTTTT
AATTAGGTTC CACTCTAATC TAACTTTTTT CTTAAGTTAT TAATTGAGCT
CAGTGACTTC AAAAAGTTGT ATAGAAGCCT TGTTTGGGCC TTTCCAGCGT
TGCTGAATGT GGGCTGAGTA ACCATGTTAG GTTGT
Go back to index
wmc267(3e7.1)
Plate reference : 3e7.1
WMC locus number : WMC267 Length of sequence : 944
Last updated : Tue, Sep 30, 1997 at 10:45 am
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. Multple inserts (3) joined 316-333, and at 636-654 by linkers. (CA)14 413 to 440, (CA)8 785 to 800, (GT)25 157 to 206, (CT)8 769 to 784. Third insert is duplicate of 3d7. Primers shown are for first insert.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
TcTTcAccccATAATTggAgAAgccT at 28 length 26 bases, Tm 69
Reverse primer details :
TgcTTATTcTgcgcAcTggATgccTA at 218 length 26 bases, Tm 73
Expected size of amplified fragment (Chinese Spring=) 216 bases.
Length of sequence : 944 Consensus sequence is :
..
ACAAGGTCAG CTAGACCAGG CAGTCCATCT TCACCCCATA ATTGGAGAAG
CCTAACAGTA ATAAGCAAAA CAAGTTGGAT GTAGCTTTAC CAATGAACTA
CTAGACTATG ACATATTAAT TGCACATATT TCGAAAAGAA CAATATTAGT
GTGCATGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGTGGAC ACTCGATTAG GCATCCAGTG CGCAGAATAA GCAATTTTTT
TCTTACATAC AGAATGTAAC TTTGAAGCAT GCATGTTCAA AAATTAACTT
CTTTTGTGTT GTAAAACTAC CTCACTTCAT GTTCTAAAAT TACAACAACA
ATTATTTTAG TATGATAGTC CACGCGTGGA CTAACCCGCA TAATTTCCTC
AAACACCCCC TCCACACACA CACACACACA CACACACACA CCAAAACCTC
CTCAGGCATG CGCGCACACA CACCCCCTCC CTCGCTCGAA ACCCTAGCAA
GGTCCCCGCC GCTGCAAAGC CTCCATTGTC AACATCTGTC AGTTTGCCAG
TGCAACTTAC CCACCGATCT CCATACCCAG GCTGCCCTGA GTTTCTTAGA
TGACGCCTGC CAAACGCCCC TTTCCCACAC ATCCCCTAGT CCACGCGTGG
ACTAGCAAGT TCAGTGTGCT ATGATGTTCT ATATGATTGT GTCAACTATA
TAAGTTTTTA CTGAGCATCA ACAATGCATA TGGCTGAAGG ATGTATTTAC
GAGCATCGAC CGATGGGTCT CTCTCTCTCT CTCTCACACA CACACACACA
CGCACACGCA CACACACACG CGCAGACGCA CAAGTGGAAT CCGTTGAATT
ATTTATTTGC TCGTGACAAC TTTTAATTAG GTTCCACTGT AATCTAACNN
TTNTCTTAAG TTATTAATTG AGCTCAGTGA ATTCAAAAAG TTGT
Go back to index
wmc268(3e7.2)
Plate reference : 3e7.2
WMC locus number : WMC268 Length of sequence : 253
Last updated : Tue, Sep 30, 1997 at 10:54 am
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : Trimmed second insert of 3e7. (CA)14 at 30-57. Coordinates for primers refer to position in original insert.
PCR Comments : 51C anneal, product;
Forward primer details :
cgcATAATTTccTcAAAcAc at 387 length 20 bases, Tm 58
Reverse primer details :
AggcgTcATcTAAgAAAcTc at 589 length 20 bases, Tm 56
Expected size of amplified fragment (Chinese Spring=) 222 bases.
Length of sequence : 253 Consensus sequence is :
..
ACCCGCATAA TTTCCTCAAA CACCCCCTCC ACACACACAC ACACACACAC
ACACACACCA AAACCTCCTC AGGCATGCGC GCACACACAC CCCCTCCCTC
GCTCGAAACC CTAGCAAGGT CCCCGCCGCT GCAAAGCCTC CATTGTCAAC
ATCTGTCAGT TTGCCAGTGC AACTTACCCA CCGATCTCCA TACCCAGGCT
GCCCTGAGTT TCTTAGATGA CGCCTGCCAA ACGCCCCTTT CCCACACATC
CCC
Go back to index
wmc(3f7)
Plate reference : 3f7
WMC locus number : WMC Length of sequence : 666
Last updated : Tue, Jul 29, 1997 at 9:41 am
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. Multple inserts (2) joined at 256-273 by linkers. No substantial microsatellite.
PCR Comments :
Length of sequence : 666 Consensus sequence is :
..
ACTGGTGAGG CTACAATCAC AACACTGCGG CGACGGCGAG CGACAGCAAT
CTGCGGCGAT GGCGAGCGAC AGCGATCTGC TATGGAAGGC GAGGATGGTG
GCCGGGGCAC GCGCTGCGCG TGGGGGTCAG AGACGTGTGC GTGCGATCTG
AATCAGACGA GGGGGCAAGG CTACGGCGAG CGGCGGCGAT CTGTCCGACG
GTGAGCGGCG GCGATCTGCT ACGGTAGGCC AGGATGGTGG CCGGGGGACA
GTGTCTAGTC CACGCGTGGA CTACGTGGCG GCGGCGGCGG CTCGCGGTGG
GAAGCGACTC CTTTGCCGTG CTCTGTGTGT CGTCGGGCCA CTGACCAACG
GCGACGGTGG CGTCTTGCGC CGTTGTTGGC GTACAGCCCG GGGATGTCTC
CTCCTTGATC CAGAAAGTGG AGAGGAGAAG TTGAGGGAGA GCTCTGGCAG
CACGACTGTC GGTGTTTTGG GAACGGGGGT CCCCAGACTT GCCTGCCTGC
GGCCCGCGGC GTGGCTCAAA GGGGGGCCCA GCACAACCCA TCTTCATCAA
CACAAGCTCA AGACCCTCGC GAGGGGCCAA GCCTCGCGGG GCGGATGACA
TGGAGCTTCC TCAAGCACAA CCTCATCAGG CTGGCTCATG AGGAGGCGGA
GAGTTCAAGG CAGGGT
Go back to index
wmc(3g7)
Plate reference : 3g7
WMC locus number : WMC Length of sequence : 225
Last updated : Wed, Aug 27, 1997 at 9:58 am
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. Duplicate of 2B7. (CA)23 6 to 51.
PCR Comments :
Length of sequence : 225 Consensus sequence is :
..
GCAAACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC
AAAGAGATCG CGCCAGCAAA TGCAAAGTCA TAGCAGACCG AAGCTATGCG
TAGGCGGATG AAGATTTTTT TTTACCAAAG TGACGATATA TAATAGTGAC
CATCCGCAAC AACATTTCTC GATAACATCA GGACTCCGAG AAAGGATCTC
CAAAAGCGAC GCCTTCAGGA AGGAG
Go back to index
wmc(3h7)
Plate reference : 3h7
WMC locus number : WMC Length of sequence : 6
Last updated : Tue, Jul 29, 1997 at 9:41 am
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No sequence 24.6.97.
PCR Comments :
No sequence available for this clone
Go back to index
wmc269(3a8)
Plate reference : 3a8
WMC locus number : WMC269 Length of sequence : 623
Last updated : Lun 9 oct 2000 at 14:43
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
PIC Value : 0.62+0.40
Comments : No trimming done to sequence. Multiple inserts joined 274-292 by linkers. Bases 405-555 (complement) ie. 5' of microsatellite in second insert match part of 6d12. (GA)29 512 to 569, (GT)15 59 to 88, (GT)10 255 to 274. First insert contains ministallite like repeat motifs - too difficult to design primers. Primers here are for second insert. Forward primer lies within homology to 6d12. Bases 504 to 570 show homology to TW4e04 bases 212 to 278 (67 in longest run, maxScore = 108). Bases 481 to 570 show homology to TW5b10.1 bases 1 to 90 (90 in longest run, maxScore = 27).
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
gcAccTTcTAAccTTccccAgc at 452 length 22 bases, Tm 67
Reverse primer details :
cccTAATccAggAcTcccTcAg at 577 length 22 bases, Tm 65
Expected size of amplified fragment (Chinese Spring=) 147 bases.
Length of sequence : 623 Consensus sequence is :
..
CTAGTGTGTG TGTGTTGCCG TGGCCCCCAG TTGCAAGCCG CCTATCGACT
CGTAACTAGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTTT CAAGCGTCCC
AGTTGCATGT CAACCATCGA CTCACAACTA GGGGTTGTGT GTTTGTTGAG
GACCTCCAGT TGCAAGTTGA CCATTGACTC GCAACTGGGG CGCGTGTGTG
TGTGTTTTGT CGTGGCCCAT GTTGCAAGCC GCCCATCGAT TCTCAACTAA
GGATGTGTGT GTGTGTGTGT GTGTTAGTCC ACGCGTGGAC TAGCGGCGGG
AGGCCAGATC TGCCCACACT ACGGCAGCGA GGAAGAAGGG GTGGGAGGCC
CTCCCCTGCC AGCGATGCTT GGGAGAGAAT GGCAAGGCAC GCTGACCGGG
ACGCACCGGC AGTGGGTAAG AGCCGTCACC GAGGACGACC ATGTGAACGT
TGCACCTTCT AACCTTCCCC AGCGGAGAGG ATCCGGCTGG ATCTGTGACC
AGCGGTGAGC AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
AGAGAGAGAG AGAGAGAGAG TGGCCACTGA GGGAGTCCTG GATTAGGGGG
GTATCCGAAT AGCCAGACTG TGT
Go back to index
wmc270(3b8)
Plate reference : 3b8
WMC locus number : WMC270 Length of sequence : 238
Last updated : Tue, Sep 30, 1997 at 11:54 am
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. (CA)14 188 to 215. Software struggled to find these primers.
PCR Comments : 61C anneal, product; 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
cAAgggccATTgTgTTgTcT at 12 length 20 bases, Tm 63
Reverse primer details :
cAAcccAAgccTAccTgTgT at 211 length 20 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 219 bases.
Length of sequence : 238 Consensus sequence is :
..
ACAGTTGCAG ACAAGGGCCA TTGTGTTGTC TACACTTCCG ACGGCAGGCG
GTTCATGCTC ATCATTCAAA GATTTAATAT CAACCATTCT ATAGATTTCT
TCTTCTAGCA CTTGAGCACA ATTTTCCTTT TCATCAAACT CACGAAAGAT
ATTAAAAAGA TGAAGCGTGG TCCAATTCCA AATGTAACAC ACACACACAC
ACACACACAC ACACAGGTAG GCTTGGGTTG GGGGCTCG
Go back to index
wmc271(3c8)
Plate reference : 3c8
WMC locus number : WMC271 Length of sequence : 542
Last updated : Tue, Sep 30, 1997 at 12:08 pm
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. (GT)10 372 to 391, (GT)23 398 to 443.
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
AgcggATccTTgTgcAcTTcgg at 236 length 22 bases, Tm 71
Reverse primer details :
TcAggccTggcTAgcAATcTcA at 506 length 22 bases, Tm 68
Expected size of amplified fragment (Chinese Spring=) 292 bases.
Length of sequence : 542 Consensus sequence is :
..
ACTACTGAAG ATGCCAGAGA TGTTTATGGA CTTCTAATAA CGCAAGTTAT
TCCAAGAAAG GAAATTTTTA GGTCATACAC TCTTTTATCC AACCACCGTC
CTCTATATGA CAGCCATACC ATCATCATTA TCCTATATTA TGAATTATTC
ATTCTTCAAG CTGTATTATC CTACAGTCAT ACATACTTAT CCTATTGTAT
TATCCTACAT GCTCCCAGCG ACCATGCCGA GCTCGAGCGG ATCCTTGTGC
ACTTCGGCAA CAGGCTCGAC GAGAAGGGGC CGAGAAGAGT GGGGAGAGTG
CGAGCCTGCG AGACCTCGCT CCGGTGATGG GGACGAAGAG GAGGGGCGGC
CTGAGGAGGT AGAGAGAAAG AGTGTGTGTG TGTGTGTGTG TGGGTGGGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGCCTATG
TGCAAAAATG ACTCAAATAG AGCAAACGAG ATCTCTTTTT TGCATATTCA
AAGTTTGAGA TTGCTAGCCA GGCCTGACGC CTAGTAAAAT GT
Go back to index
wmc(3d8)
Plate reference : 3d8
WMC locus number : WMC Length of sequence : 265
Last updated : Tue, Jul 29, 1997 at 9:41 am
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. No substantial microsatellite.
PCR Comments :
Length of sequence : 265 Consensus sequence is :
..
CCCACCACTG CCACCCATAA GTCATACCCC TTCGTTTTTT TCCAACTCTT
TTGTTTTTTA TAGCCATCAC GAACGAGAGA TCTCAACAGC TTATCCTTTC
GCTTTCACGA GGCACGGACA AGAGACCTAC CGCCGCCGCC GCCGCCACCT
GCATCGGCCG GCCGGAGCAC GACGCCGGCG AGGAGGCCAC CAGAATGGGT
CGATCCGGTG GTCCTCCTCC TCCTCCCTCC AATTTCTCTG CCCATCTCCA
CCATCCAAAT CCCGT
Go back to index
wmc272(3e8)
Plate reference : 3e8
WMC locus number : WMC272 Length of sequence : 706
Last updated : Thu, Jun 11, 1998 at 11:26 am
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. May be multple inserts (2) joined at 433-442 by linker. First insert is a (near) duplicate of 9G1.(GA)9 340 to 357, (GT)8 288 to 303, (GT)9 318 to 335, (GT)26 508 to 559. Primers here are for second insert. Use reverse primer at close to Tm (risk of secondary priming). Bases 98-192 match part of 3e12 (complement).
PCR Comments : 61C anneal, product; 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
TcAggccATgTATTATgcAgTA at 452 length 22 bases, Tm 60
Reverse primer details :
AcgAccAggATAgccAATTcAA at 570 length 22 bases, Tm 65
Expected size of amplified fragment (Chinese Spring=) 140 bases.
Length of sequence : 706 Consensus sequence is :
..
GTGGATTGNN CTCCTTCCTT TCCTTGTCCC ATTCGTTTCT ACCCTCTATG
GCCCAACAAC ACCGTTGGTG ATAAAGCTGT CTCTTTAGTT CGCCATCGGC
CTGCAGTCCC CCGTCATGTT TCCACCGTCG TCGCACGAGG CCCCGCGACT
TNCATGCGCC TCCCCGAGCT TGCCTCCCAA GACCGGGTTT TGCCGACGCG
GCCTCTGCAG TTTTCTGAAA AAAAATTGTG TGGTTTGTGT GAGTGTTTGT
NTTGTTGGTG TGTGTGGGTG TGATTGTTTG TGTGATGGTG TGTGTGTGTG
TGTCAGTAAG TGTGATGGTG TGTGTGTGTG TGTGTGATAG AGAGAGAGAG
AGAGAGATTG GTATGCATAT GTGTTACTCA GTAGGAGTTA TGCCATAGTA
GGAGATGCCA CAGTCGCATT ACTCTTGCTT ACGCGTGGAC TAACCGTGGG
CTCAGGCCAT GTATTATGCA GTAATCACCT CTAATAATTA GCAAGACACA
TGCATCTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TGTGTGTGTT TCATAGTAGT TGAATTGGCT ATCCTGGTCG TAGATCTGGT
GCCCACCGAG TGACAGGTCC TTGATNTCTT TTTATTTAGG GCATCTTTGT
TTCANCATTA GGGCATGNAT GGAGTTGGCA TTCCATGTGA TGCATGCNAG
CACCCA
Go back to index
wmc(3f8)
Plate reference : 3f8
WMC locus number : WMC Length of sequence : 189
Last updated : Tue, Jul 29, 1997 at 9:41 am
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. No substantial microsatellite.
PCR Comments :
Length of sequence : 189 Consensus sequence is :
..
GCCTCCCTAG GCGCAGGAAC GCCACCGTCC GCGCCGGTCC TCGTCACGCT
GTCGAGTTCT TCCTGGCCTA CTTCGAGCAC TATCACTTTG CTTCTGACCT
AGTCGCCGCC GCCGCCACCG CCTCGTCAGG TCGCTGCCGC CGCTCTTCTT
CCCGGTCCAC GACGACTACC TCGACACCGG CTACCCCGA
Go back to index
wmc273(3g8)
Plate reference : 3g8
WMC locus number : WMC273 Length of sequence : 501
Last updated : Tue, Sep 30, 1997 at 1:25 pm
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. (GT)8 395 to 410, (GT)13 453 to 478.
PCR Comments : 51C anneal, polymorphic product on agarose; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
AgTTATgTATTcTcTcgAgccTg at 323 length 23 bases, Tm 58
Reverse primer details :
ggTAAccAcTAgAgTATgTccTT at 479 length 22 bases, Tm 55
Expected size of amplified fragment (Chinese Spring=) 179 bases.
Length of sequence : 501 Consensus sequence is :
..
ACTAGCTTTG GATGTCCAAA TTTGTCGCTG ATAAAGAATT ATCATTGCTG
CCTGTGCTAC CACCTTGTTC TTCTTCATCA CGAATTTCCA TCAACGACAC
TCCAGTTTTG TGTGCAACTA CAAGCCTGTA GATAGATAAA AGAACACATG
ATTTTACTAA TCTATAATCA TAGGAAACGA AAAGGATGTA AATGACCACA
CCATCTATAT AGCTAAGCGT GCTACGAAGG GGAAGTAAGA AAATTAATAA
GAACTAGAAA TATTGATTAC CTTCCTGATC CCACCAAACA TGCGAGACCC
ACAACCCATC CACTGTCATG AAAGTTATGT ATTCTCTCGA GCCTGGAAAA
TATGAAGCAC TCAGTAATTT GCCATTATAG AGGCTAACCG GCATGTGTGT
GTGTGTGTGT GCGCGCGCGT GCAATGTCAT GTAGAGGTGC CATGTTCTCA
AGGTGTGTGT GTGTGTGTGT GTGTGTGTAA GGACATACTC TAGTGGTTAC
C
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wmc274(3h8)
Plate reference : 3h8
WMC locus number : WMC274 Length of sequence : 337
Last updated : Tue, Sep 30, 1997 at 1:36 pm
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. (GAAAA)9 microsatellite 145-187.
PCR Comments : 61C anneal, product;
Forward primer details :
AAgcAAgcAgcAAAAcTATcAA at 92 length 22 bases, Tm 61
Reverse primer details :
gAATgAATgAATgAATcgAggc at 209 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 139 bases.
Length of sequence : 337 Consensus sequence is :
..
ACATACTGGT CAACCAATAA GGGCCGTCGT ATCGGCCCAA GGGAGGCGGG
ATCGGAGAGC AATCCGTGGG ATGGGGTGAT TGACCAATCG CAAGCAAGCA
GCAAAACTAT CAATTCTTTT CTTTTCATTC ACTCACAAGG AAAGGAAAGA
AAAGAAAAGA AAAGAAAAGA AAAGAAAAGA AAAGAAAAGA ATCCCCAAAC
GACGCAGCGC CTCGATTCAT TCATTCATTC ATTCCTCTCC TCCGTTGGCT
TCCCCACATC GCCGCCGCCG CCACCCACCG CCTCCTCTCC CACGTCGCTG
CCGGCCATGG CCTCCGCCCT CTACCTCTCC CTCTCCC
Go back to index
wmc(3a9)
Plate reference : 3a9
WMC locus number : WMC Length of sequence : 739
Last updated : Mar 22 DŽc 1998 at 9:41
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. Multiple inserts (2) joined 516-532 by linkers. Second insert is duplicate of 7H1.(CA)10 680 to 699. No microsatellite in first insert. Bases 557 to 617 show homology to 12f3 bases 59 to 119 (61 in longest run, maxScore = 94). Bases 422 to 451 show homology to 25b3 bases 1 to 30 (complement) (30 in longest run, maxScore = 51).
PCR Comments :
Length of sequence : 739 Consensus sequence is :
..
GCTAGGNCGA CCTAGGTTTC CACCTGTATA TNANACCGCA TCTTCCACGC
CACGCGCTAG CCTGCCGCCG CCGCCACTCA CTCGCGCCGC TGCCGTAGCT
AGTAATCCCT GCGAAGAGGA AGCACCTCGG GCATCAGCAG CAATCATGGC
GGACGCTAAG ACGGCGCCTG CGGTGACTCT CCGCACCCGT AAGTTCATGA
CGAACCGTCT CCTCTCACGC AAGCAATTCG TGCTCGAGGT GATCCACCCC
GGCCGCGCCA ACGTGTCCAA GGTGCGCCCT CCATACTGCC AAGATCGTTG
TCATCTTTGG GCTCGTTGAT TTTCGATGCG AGTTTAGGCT GATCCGCGTG
TGTCACAGGC GGATCTCAAG GAGCGTCTGG CCAAGATTTA TGAGGTGAAG
GACTCGAACT GCATCTTTGT GTTCAAGTTC CGCACCCACT TCGGAGGCGG
CAAGTCCACC GGCTTCGGCC TCATCTACGA TAACCTCGAG GCTGCCAAGA
AGTTCGAGCC CAAGTTAGTC CACGCGTGGA CTACCGAAGG AGTAGGGTGA
CACGTCGATC TTGATACTAA TCTATCGACT GGCTTCTCTC TCAAACATAC
ACACACACAC ACTACCCGGC ACCGAAGGAG TAGGGTGGCA CATCGATCTT
GATAATAATC CATCTACTCC TCTTTCAAAC ACACACACAC ACACACACAC
TCGCTAGTTG TGCCTCTGTG CCTACCGCGC ACACTCTCC
Go back to index
wmc(3b9)
Plate reference : 3b9
WMC locus number : WMC Length of sequence : 460
Last updated : Tue, Jul 29, 1997 at 9:41 am
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. No substantial microsatellite. Weak homology to 13g4.
PCR Comments :
Length of sequence : 460 Consensus sequence is :
..
ACCAAGGACC CCGCGTCAGA TGATGAAAGG ACAGGGAAGG GAAAGAAGAA
CGGCAATGGC AAGGGTCCTC AGCATAACCC GGCGAACCAA GGAGGTAGCA
AGCGTAAGGT TGATGGCAGC ATAGAGTTTG TGGCCAATGC CAGCTCACAG
GGTAACAACC AGCAACGTAA GGGGAGGCCA CCTCCCCGAG CCGGCGGTTC
AGGCCCAACA CTTGAGCAGT TGTTGAATGA GCCTTGTCCA AGGCATGGCT
CTAGAGAGAA GCCAGCTACT CATCTATGGA AAGATTGCTC AATCATGAAG
GCCTTTAAGA ATTCCAATGC CTTTAATGGC AACAATGGCT TGGGCGGCGG
CTCAGGCGCT GGCGGCTTTC ATGGCCCGGG CGGCGGCTCA AATTCCAGTC
CTCAGAGTGT TCAAGGGGTA GAAACTGCTG CGGTTAAGAA ATTACAACCT
TCCAAATAGG
Go back to index
wmc(3c9)
Plate reference : 3c9
WMC locus number : WMC Length of sequence : 6
Last updated : Tue, Jul 29, 1997 at 9:41 am
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No sequence 24.6.97.
PCR Comments :
No sequence available for this clone
Go back to index
wmc(3d9)
Plate reference : 3d9
WMC locus number : WMC Length of sequence : 226
Last updated : Wed, Aug 27, 1997 at 9:34 am
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. Bases 103-213 (ie. 5' side of small microsatellite) match part of 4F9. Almost a duplicate of part of 13C5 (complement). No substantial microsatellite.
PCR Comments :
Length of sequence : 226 Consensus sequence is :
..
GCAGGATGGC AGGAACACCA TCATCACCAA CTCTGTTTTT TTATAAGAGT
AGAGATATGT AAGTGTCACT GCCCCCCTCA CACACACCCA GACACCCACA
CCCACACACA CACTTCCCAA CACCGAAGGA GTAGGGTGAC ACCCCGCTCT
TGATACTAAT CTATCGACTG GATTCTCTCT CAAACACACA CATACACACA
CACACACTAC CCGACACCGA AGGAGT
Go back to index
wmc275(3e9.1)
Plate reference : 3e9.1
WMC locus number : WMC275 Length of sequence : 1134
Last updated : Mar 22 DŽc 1998 at 9:42
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. Multiple inserts (2) joined 636-653 by linkers.(CA)19 203 to 240, (CA)13 973 to 998, (CA)9 1000 to 1017, (CA)23 1026 to 1071. Primers shown are for first insert. Bases 1027 to 1134 show homology to 25f12 bases 96 to 203 (complement) (108 in longest run, maxScore = 44).
PCR Comments : 61C anneal, product; 51C anneal, polymorphic product on agarose; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
TTgccTTTgAAATgTATggcTAgTAT at 142 length 26 bases, Tm 63
Reverse primer details :
TTTgAgcAcTTTTAgcAcTgAAATcT at 330 length 26 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 214 bases.
Length of sequence : 1134 Consensus sequence is :
..
ACATCTCTAC ACGTTCGCGC ATGTTACATC TAACAACTAT GCAATGCAAC
ACTACTACAG TCTAACACAA TAAATCATAT GTGTTTTTAG TTTTACTAGA
TCTCATATTG TTAGTTAATT ATTCAGTTTG CATCATTAAA ATTGCCTTTG
AAATGTATGG CTAGTATCAT CTAGTGATAT GAAAGGKCAA ACTACNNNNN
NACACACACA CACACACACA CACACACACA CACACACACA TATGCGTCAT
CAAATATGGC CAACTTTGTA TGTTCTTGCA AGTTTTTAAA ATGAAATATC
ATGTAGAGCT ACTTCAATAT CATGAATTTC AGATTTCAGT GCTAAAAGTG
CTCAAAACAT CAAGCATTGA AATCTTTTTC TTGTGTATAT CTCCTCGGAT
GTTTTTTTGG CTTGAAAACT TGCAAGCACC TACAAAGCTT GATCATATTT
GATGTTGCAA AGTCTCATTT TTTTTCTAAT TTACTGTTCG TAGAGGATGT
AGGGGSACTC GAGATYTGAA AAACCACTCT CCTTTTCTAA TTATCTCTCC
ATTATTTTGC ATTGGCTTAT GTTTTCTTGG CACAAAGAGA ATGTTTTATT
GTGCACTTGA ATTTTTTTTC TAAAATTATT ATGTGTAGTC CACGCGTGGA
CTAACAAAGA ACAACAGAAG TAAAGTGTTA AATGCAGGTA TGTAGACCGC
CTAGCGATGA TTACAAGCAA TGGAACGAGC TGAAGGTGCG TCGCCATCGT
CCACCCCAAA GCCAGACAAA TCTTGTTGTA GTAGACTGTC GAAAAATCAT
CGTGCAAAGG CCCCAAAGGA CATGTGCACC AGAATAGCAG CCGTAGTCGA
TGAAGAGAAG GGTAGACGAT CTAACCTGTT GACACATGAA CATAGATGTA
AACCGGATCC CAGCAGTTCC ACCAAAGGCA AACACCGACT GAATCCCACG
ACATGAATCA GGGACACACC TCCACACACA CACACACACA CACACACAAC
ACACACACAC ACACACAACA CACAACACAC ACACACACAC ACACACACAC
ACACACACAC ACACACACAC ACTTGGTTGG TNTCATGCTA AGGAGTCGAA
TAGTTCTTCT CTTCANCGCG GTCGAGGGAG TTCG
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wmc276(3e9.2)
Plate reference : 3e9.2
WMC locus number : WMC276 Length of sequence : 1134
Last updated : Thu, Jun 11, 1998 at 11:26 am
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : Second insert in 3e9. (CA)19 203 to 240, (CA)13 973 to 998, (CA)9 1000 to 1017, (CA)23 1026 to 1071. Primers shown are for second insert (coordinates refer to total insert).
PCR Comments : 51C anneal, polymorphic product on agarose; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
gAcATgTgcAccAgAATAgc at 817 length 20 bases, Tm 59
Reverse primer details :
AgAAgAAcTATTcgAcTccT at 1089 length 20 bases, Tm 52
Expected size of amplified fragment (Chinese Spring=) 292 bases.
Length of sequence : 1134 Consensus sequence is :
..
ACAAAGAACA ACAGAAGTAA AGTGTTAAAT GCAGGTATGT AGACCGCCTA
GCGATGATTA CAAGCAATGG AACGAGCTGA AGGTGCGTCG CCATCGTCCA
CCCCAAAGCC AGACAAATCT TGTTGTAGTA GACTGTCGAA AAATCATCGT
GCAAAGGCCC CAAAGGACAT GTGCACCAGA ATAGCAGCCG TAGTCGATGA
AGAGAAGGGT AGACGATCTA ACCTGTTGAC ACATGAACAT AGATGTAAAC
CGGATCCCAG CAGTTCCACC AAAGGCAAAC ACCGACTGAA TCCCACGACA
TGAATCAGGG ACACACCTCC ACACACACAC ACACACACAC ACACAACACA
CACACACACA CACAACACAC AACACACACA CACACACACA CACACACACA
CACACACACA CACACACACT TGGTTGGTNT CATGCTAAGG AGTCGAATAG
TTCTTCTCTT CANCGCGGTC GAGGGAGTTC G
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wmc(3f9)
Plate reference : 3f9
WMC locus number : WMC Length of sequence : 280
Last updated : Tue, Sep 30, 1997 at 2:19 pm
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. (GT)24 20 to 67. No room for primers.
PCR Comments :
Length of sequence : 280 Consensus sequence is :
..
ACCAGAGAGA GCTTTTGGGG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG TGTGTGTAAA ATGATGGATT AGACTTATGT GTGATTACCG
TCCCAACCAA ACATGTGCAA CCACTCGACC CCTTTATGGG ATGGGGAATT
ATTGATAACT TAGGCTGATA CTAGCATGGT GCCCACATTA CTAGTGACGG
GGGTGACTTG AGGTCACTCT CGGGACGGGG CGTGCTTGGA TAGGCGGCCA
TGACTGTTTT CACAGGGCAC CGGACACACC
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wmc(3g9)
Plate reference : 3g9
WMC locus number : WMC Length of sequence : 394
Last updated : Jeu 27 Aož 1998 at 12:06
Owner : Keller, Zurich Date at Agrogene : 24.6.97 Public Domain : Yes
Comments : No trimming done to sequence. (Near) duplicate of 9E4. No substantial microsatellite. Bases 137 to 212 show homology to 10f10 bases 140 to 215 (76 in longest run, maxScore = 137), duplicate, 3g9 has precedence.
PCR Comments :
Length of sequence : 394 Consensus sequence is :
..
ACGCCAACAA CGGCGCAAGA CGCCGCCGTC GCCGTCGGTC AGTGGCCCAA
CGACACACAG AGCACGGCAG AGGAGCCGCT TCCCATCGCA AGACGCCCCC
GCCGCCGCCG CGTAATCTAA ATTTGCCATG AAAAAGTTCG GATTGCCATG
CTTAAAATCC GAACGTTTAT CATTTCCGTT TATTTTAGAT CGATCGTCGT
ATAATTTAAA GTTGGAGTCA GACTGAATGA AATCTATAGT TTGGTCAATT
GAATGTTCTG CTAGAGCCGT ATCAAATTAA ATATAAAACG TCATCAAGCC
ACATATATTC CTTGTCATCC AACGACCTAG ACTGCTTCAA TGTCGAGCGC
TCAACACATT TAGCGTGCAG TTAATTTCAT GCCAAAAATA GTGC
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