Wheat microsatellite WMC 25/06/01
wmc(8g3)
Plate reference : 8g3
WMC locus number : WMC Length of sequence : 195
Last updated : Mon, Oct 13, 1997 at 2:03 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : contains no repeat sequence. Trimmed to insert at both ends. No substantial microsatellite.
PCR Comments :
Length of sequence : 195 Consensus sequence is :
..
GGCTCGGCTC GGCTCAATCC CGCGGCGCGG CGCGGCGAGG CGGGCGGCGA
AGGAGAAGTG CGCGAGGGCC TCTTCTCTTC TCAAGCTCCA ATAGCATGTA
GAAGAGAAAC CCTTATAAGG AGGTCCAACT CCTCTTCCAC TTCCGGGGTG
GGACTAAACT TCCCACTACA CCTAGTGCCA TATAACCCAC ATGGG
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wmc(8h3)
Plate reference : 8h3
WMC locus number : WMC Length of sequence : 266
Last updated : Mon, Oct 13, 1997 at 2:03 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Contains (GGC)3(GCG)2. Trimmed to Rsa1 at 5' and to insert at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 266 Consensus sequence is :
..
GTACGACCGA GACTCCTTCG AGGTGTCGGT CGAGTCCGGC GTCACCGACA
CATACACGTG CCAGTGCGCC AAGTTCGCCA GGGACGGGAT CCTCTGCTGC
CACGTGTTCA GGCTCTTCAC GCAGTTTGGC ATCGACGAGA TACCCGAGAA
ATACATCGTG GCCCGGTGGA CCGACGGTTT CAGGGAGGAG CAGCTGGAGC
GTCGTGAGGA GGGGCGGTTG GTGGCGGCGG CGCGGCGCGA GGAGGGTGCG
GCGAGGTTAG TCCACG
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wmc(8a4)
Plate reference : 8a4
WMC locus number : WMC Length of sequence : 280
Last updated : Lun 4 Jan 1999 at 16:34
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 58 to 93 show homology to 17h8 bases 56 to 91 (complement) (36 in longest run, maxScore = 26). Bases 94-242 (complement) show homology to part of 11f12. (CT)12 3 to 26, (CT)12 90 to 113, (CT)11 193 to 214. Too difficult to make primers. Bases 56 to 85 show homology to 21a5 bases 15 to 44 (30 in longest run, maxScore = 55). Bases 54 to 93 show homology to 20b10 bases 96 to 135 (complement) (40 in longest run, maxScore = 49). Duplicate with 20b10, 8a4 has priority.
PCR Comments :
Length of sequence : 280 Consensus sequence is :
..
ATCTCTCTCT CTCTCTCTCT CTCTCTGACA ATCTTCAGTT CTGTCGCACG
CATCCAACAC ACAAACCTTG TTGGTCCCTC TCCCTCCATC TCTCTCTCTC
TCTCTCTCTC TCTGTCTCTC TCTCTCTCTG ACAATCTTCA GTTCTGTCGC
ACGCATCCAA CACACAAACC TTGTTGGTCC CTCTCCCTCC ATCTCTCTCT
CTCTCTCTCT CTCTGACAAT CTACAGTTCT GTCGCACGCA TCCAACACAC
AAACCTTGTT GGTCCCTCTC TCACTCTCTC
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wmc(8b4)
Plate reference : 8b4
WMC locus number : WMC Length of sequence : 349
Last updated : Mon, Mar 16, 1998 at 12:13 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Contains (GT)11 imp (GA)14 and (GT)5 (GA)6. Trimmed to Rsa1 at 5' end and to insert at 3' end.
(GA)8 198 to 213. Practically identical to 2h11 (member of 1g1 family).
PCR Comments :
Length of sequence : 349 Consensus sequence is :
..
GTACAGATGA TAAGTTTGCT GACTACTAAA GTAAAGTGGA ATTTGTCCAT
GTTATGCAAG TAAATAAAGG CGATTGTTTA TCATACGGGT AAGGTTGGAT
GAAGGGCGGT AGGAACAAAT GCTCCGCCTA GAGCATGTGT GTGTGAGATG
GAGTCTTAGA GTGTGTGTGG GTGTGTGTGT GTGTGAGAGA GAGAGAGGAG
AGAGAGAGAG AGATGGAGTC TTAGTTTCTG TGTGTGTGTG AGAGAGAGAG
AGGTGGAGTC TTAGTGTGTG TGGGGTGTGT GTGTGCGTGT GTGTATGTGT
GTGTGTTTGT GTGTGTGAGA GAGAGAGAGA TGGAGTCTTA GTGTGTGGG
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wmc(8c4)
Plate reference : 8c4
WMC locus number : WMC Length of sequence : 6
Last updated : Mon, Oct 13, 1997 at 2:03 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : No sequence 15.9.97.
PCR Comments :
No sequence available for this clone
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wmc303(8d4)
Plate reference : 8d4
WMC locus number : WMC303 Length of sequence : 408
Last updated : Tue, Mar 17, 1998 at 10:51 am
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Contains (AG)22. Trimmed to Rsa1 at both ends. (GA)21 292 to 333. Bases 12-39 show homology to 3b2 (primers outside this region).
PCR Comments : tested 61C anneal, no product; 51C anneal, complex products.
Forward primer details :
cAAAATgTcccAgccAAAgAgT at 258 length 22 bases, Tm 64
Reverse primer details :
gcTcTTgAgcTggTgTgATgAA at 357 length 22 bases, Tm 65
Expected size of amplified fragment (Chinese Spring=) 121 bases.
Length of sequence : 408 Consensus sequence is :
..
GTACTCTCTC TCACCTTTTC AATGCAATGA AACGCAAAAA TCACTTTGCG
TTTTCTCGAA AAAAAGTATG TCTTTATACC ATGGAAGCCA TGCCATCGAA
ATAAGATTCA TTATGACACT TAAGATATTA ATCTATTAAA ACAAATAGTC
TTTGACATAA AGACAACTCA AATCAAAAGA AAGCAGGGTA AATAGTTTCA
ATACAAAAAG TGATATAAAA TATAAAGAAA TTTAGGTTCA TTCATGCTAT
CCCAAGCCAA AATGTCCCAG CCAAAGAGTA GTTGTTCAGC AGAGAGAGAG
AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGGCGATC GAACTCACCC
AAGTAGTTCA TCACACCAGC TCAAGAGCAC CTCTAGCGAG GCTGTTGTTC
CCTTGTAC
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wmc(8e4)
Plate reference : 8e4
WMC locus number : WMC Length of sequence : 280
Last updated : Mon, Oct 13, 1997 at 2:04 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 280 Consensus sequence is :
..
GCCGCCGCCG CCGCCGCGGG TCTCCTCGTC TTCACCGACT CAGGCCGCTG
CATCAACCTG ACGCGACCAG AGAAACGGCG GCGACCTCCA CAACTCACCA
GCACCCGTAA GCCCTTGCCA CTCCATAAAG TAGATCCGCA TTAGGGTTCT
TTGCTGTTCT TCCCATGTTC GTCGCCGTTC ATCACGAGCT CTTGATAGAT
TCCATTATTA CCACCTTTTC TTGAGCTTTA GACTGTACAG AACTACTGCG
GTAGTTGTTT CACGCCCGTT CCCAATGTAC
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wmc(8f4)
Plate reference : 8f4
WMC locus number : WMC Length of sequence : 6
Last updated : Mon, Oct 13, 1997 at 2:04 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : No sequence 15.9.97.
PCR Comments :
No sequence available for this clone
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wmc304(8g4)
Plate reference : 8g4
WMC locus number : WMC304 Length of sequence : 326
Last updated : Mar 22 DŽc 1998 at 9:42
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. (CT)20 179 to 218. Bases 3-65 match part of 6b10 - primers outside of this area. Bases 177 to 218 show homology to 22a7 bases 193 to 234 (42 in longest run, maxScore = 58), true duplicate, 8g4 has priority. Bases 173 to 218 show homology to 25c7 bases 100 to 145 (complement) (46 in longest run, maxScore = 106).
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide.
Forward primer details :
cgATAcAAggAAgAccAgcc at 100 length 20 bases, Tm 61
Reverse primer details :
ggTTcgTcTggTTcgcAAgT at 219 length 20 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 139 bases.
Length of sequence : 326 Consensus sequence is :
..
GGGACACAAG ATTTATACTG GTTCGGGCCA CCGTTGTGGT GTAATACCCT
ACTCCAGTGT GTGGTGGGTG GATTGCCTCT TGGGGCTGAT GATGATGAAC
GATACAAGGA AGACCAGCCT CGCGAGGGTC TGTTCTTGGG TGGGGGGATG
AACTGCTAGG AGGAGTTCAG TAACCCTTCT CTCTCTCTCT CTCTCTCTCT
CTCTCTCTCT CTCTCTCTAC TTGCGAACCA GACGAACCAA CTCCGCGAAC
CGAACCAACC AACTCCGCGA ACCGAGCCCC CTCCTCTGGA ATTAAGCGAA
TGCATCTATG CCGTGAGCTC GAGTAC
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wmc305(8h4)
Plate reference : 8h4
WMC locus number : WMC305 Length of sequence : 222
Last updated : Tue, Mar 17, 1998 at 11:14 am
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. (CA)21 87 to 128.
PCR Comments : 61C anneal, product. Not polymorphic on tested varieties;
Forward primer details :
AcccTAAgAggTggTTcTgTTg at 43 length 22 bases, Tm 61
Reverse primer details :
gAAccAgcccTAccAcAcATAA at 189 length 22 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 168 bases.
Length of sequence : 222 Consensus sequence is :
..
TCGGAGATAT GAGAGCTCAG GTTTAGTTTA TCTATGTTTT TCACCCTAAG
AGGTGGTTCT GTTGTAGCCT CCCACCCCCA CCCCGCCACA CACACACACA
CACACACACA CACACACACA CACACACACC ATACAACCTC TTAAAGAAGT
TTTAGTAATT AGTTGCCGAC GATCTACGAG AGTTTGGGTT ATGTGTGGTA
GGGCTGGTTC TTGTGCATGT AC
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wmc306(8a5)
Plate reference : 8a5
WMC locus number : WMC306 Length of sequence : 239
Last updated : Tue, Mar 17, 1998 at 11:26 am
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : contains (TC)12 and (CA)22 repeats. Trimmed to rsa1 at 5' end and to insert at 3' end. Bases 1 to 86 show homology to 14c5 bases 1 to 86 (86 in longest run, maxScore = 62). (CA)22 88 to 131, (CT)11 62 to 83. Forward primer is within homology to 14c5.
PCR Comments : 61C anneal, product. Not polymorphic on tested varieties.
Forward primer details :
TTgcTTccTTgcTcgATgc at 27 length 19 bases, Tm 64
Reverse primer details :
ccAAcgAATgAgccgATgT at 146 length 19 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 138 bases.
Length of sequence : 239 Consensus sequence is :
..
GTACTGTAAA ATGGACCATC TTTGCTTTGC TTCCTTGCTC GATGCCGGCC
ACTTCTTCCG TCTCTCTCTC TCTCTCTCTC TCTCACGCAC ACACACACAC
ACACACACAC ACACACACAC ACACACACAC ACGCACCAGA GGACGACATC
GGCTCATTCG TTGGAGAAGA CCGGGGAGAA GGGGCGCTAG GAGTCGAAGC
CTTCCAAGAG CCAGCGGAGA ACCACAACGA ACGCGCCGG
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wmc(8b5)
Plate reference : 8b5
WMC locus number : WMC Length of sequence : 6
Last updated : Mon, Oct 13, 1997 at 2:04 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : No sequence 15.9.97.
PCR Comments :
No sequence available for this clone
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wmc307(8c5)
Plate reference : 8c5
WMC locus number : WMC307 Length of sequence : 295
Last updated : Tue, Mar 17, 1998 at 12:10 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Contains (GT)8(GA)13. Trimed to Rsa1 at 5' end and to insert at 3 ' end. (GA)13 171 to 196, (GT)8 155 to 170.
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide.
Forward primer details :
gTTTgAAgAccAAgcTccTccT at 81 length 22 bases, Tm 63
Reverse primer details :
AccATAAccTcTcAAgAAcccA at 204 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 145 bases.
Length of sequence : 295 Consensus sequence is :
..
GTACAAACCC CCATAAGCCT TCATGATAAG AGAGGTTGTT GGGTAGTTTC
TAGGGAACAT CGAGAGTAGT TCCCTTGTTA GTTTGAAGAC CAAGCTCCTC
CTTTCATGAA TTCTTCTGTA TGTGTTCATC TCTATTTTCT TTAAGCTCAT
CGTTGTGTGT GTGTGTGTGT GAGAGAGAGA GAGAGAGAGA GAGAGATCCT
ATATGGGTTC TTGAGAGGTT ATGGTTGAAG TTCTTTTAAT GAGTTCATCA
AAGTGACTTT ACTTTATTTG TTACTCTTGG AGGGTGTATG CCTCC
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wmc(8d5)
Plate reference : 8d5
WMC locus number : WMC Length of sequence : 252
Last updated : Mon, Oct 13, 1997 at 2:05 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. No substantial microsatellite.
PCR Comments :
Length of sequence : 252 Consensus sequence is :
..
GTGAAGCGCG CTACTGCGTG GCCTCACGAG CCCAGCCAAG CAGGTTAGAG
CCCAAGAAGC CCAGCCAGTA AACCTCCTTC CATCCTGGCT CGTCTCCTCG
TTCCCCTTTG TTGTCTAGGG TCGCCGCCCG CCGCCGCCGC CGCCGGCCAA
GCTACCCTTT ACCAAGTCCC GCACCGCCAC ACCCAAACTT TAGTAAGCGA
CCGACAAACA GGCATGTCGA CGGAGAGGAT CCGGTGGGGC AGTGAATCAG
CG
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wmc(8e5)
Plate reference : 8e5
WMC locus number : WMC Length of sequence : 482
Last updated : Mon, Oct 13, 1997 at 2:05 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : contains (CAA)3(CGG)2 and (GGT)3. Trimmed to Rsa1 at 5' end and to insert at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 482 Consensus sequence is :
..
GTACCAAAAC CAAAAAGGCA ATGGAGGATC CCGTGGCGGC GGCGGCTATG
GCAATGGCGG CTATGGCGGT GACTACGACA GTGGCGGTGG CTATGGCAAC
GATGGCCCTA GCAACGGTGG CTATAACAAC ACTGGTGGTG GCGACCATCC
TGGTGGTTCT AATGGCTATC ATCAGAACAA CAACAACGGC GGGGGCGGCT
ACCATGGTGG TGGTGGCAGC GGCGGCTACA ACCACCTAGG CAACTCCAAC
ACCAACAATC GGCGCCCCTC TCCGGCAACA ACAGTGGGCG CAATTTCCAG
GGCTACGAGG GCTACGAAGG GAAGTGTCAG ATATGTAAGA AAACAAATCA
TATTGCTAAA GATTGTGATT GGCGCTATGC CGATGACACC TCCCAAAAGA
AAAAAGTTGC AGCTGCAGCA GATGCATCAT ATGGTGTCGA TACCAACGGG
TATATGGACA CTGGCGCCAC AAACCGTATC AC
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wmc(8f5)
Plate reference : 8f5
WMC locus number : WMC Length of sequence : 187
Last updated : Mon, Oct 13, 1997 at 2:05 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 187 Consensus sequence is :
..
GTACGGCGAC GCGGCCCCCG GTGGCGGTCT TGAGGCCAAA CAACCCGAGG
GCGGCGCGCG GGTGCGGAAG CGGCGGCGGC TAGGGTTTAG GATCGATTAG
GCTGATACCA TGTTAGAAGG GAGGGAGGAA TTTGGTGGAA TAGTTGTTTG
TATTGCTTGA GCCTCGTAGG CGCACACACA CACACAC
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wmc(8g5)
Plate reference : 8g5
WMC locus number : WMC Length of sequence : 344
Last updated : Mon, Oct 13, 1997 at 2:05 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 344 Consensus sequence is :
..
CCCCGGAGGC GACCATGGCG GCGGCGGCGG CGGGAAGTGA TTTGTTGGTG
GTTCGCCTGC CTTCTCCCTC GGCGGAGGAC CCCCTGCACC ATGATAAGAA
GGTTCCCTCG ACATCCCATA TACTCGTATC GATTTTTTTT TCTTCTTTTC
CCCGGGAGCA GGACAAATCA AAGGGCTTCT TTGACCTGCG TTAATTCTCT
AGATAGATAT GAACTAGTAT ATGGGTGGAT TAATGAAGTG TGGACTAGCG
GCTCATTGTT TACTTAGTTG GGCAGAAATG TTATAAATTT CTGTATGCCT
GCCTCTGTCT CTGTGGACAT GGAATGCGGG CTCTCTGCCC GTAC
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wmc(8h5)
Plate reference : 8h5
WMC locus number : WMC Length of sequence : 70
Last updated : Mon, Oct 13, 1997 at 2:05 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 70 Consensus sequence is :
..
GTACACCGAC CGATCTCCCG CTATACATAT AGCTAGCTAG GTCCTTATAA
CTCATTTTTC CCCACGCGCC
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wmc(8a6)
Plate reference : 8a6
WMC locus number : WMC Length of sequence : 179
Last updated : Mon, Mar 16, 1998 at 12:41 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end(GA)17 99 to 132, (GT)21 57 to 98. Too difficult to design primers.
PCR Comments :
Length of sequence : 179 Consensus sequence is :
..
GTACTAGCAG CCAAAAAAAA CATACTCGAG GCTCCCGTGC GTGCGTGTGC
GTGTGGGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGA
GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GATATGTGAC AATAAAATAC
AAGCAGACTC AAGGCTCCCA TGCTATGAC
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wmc(8b6)
Plate reference : 8b6
WMC locus number : WMC Length of sequence : 6
Last updated : Mon, Oct 13, 1997 at 2:05 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : No sequence 15.9.97.
PCR Comments :
No sequence available for this clone
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wmc(8c6)
Plate reference : 8c6
WMC locus number : WMC Length of sequence : 251
Last updated : Mon, Mar 16, 1998 at 12:43 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Contains (GC)4(GT)9 and (GA)15 imp. Trimed to Rsa1 at 5' end and to insert at 3' end. (GT)9 17 to 34. (Near) duplicate of 3c4.
PCR Comments :
Length of sequence : 251 Consensus sequence is :
..
GTACGCTTGC GCGCGCGTGT GTGTGTGTGT GTGTCTGAGA GAGAGAGAGA
GGGAGAGAGA GAGAGAGTGA AGTCTCAAAA CAAAAGGTGC TCTGCTGGAA
TCCCATTGTA TGTATTCATA TGGTTCCGGA ACTCGAGTTA ACCTTAGGCA
TATGTGTGAG AGACATAATT ATACTTTGAG ACATTAGTGG CTGTGGGTGG
GCGGAATTAA AGTGGTGGGC GTGTTCAACA GAGAGAGCGT GTGTGTTTCC
G
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wmc(8d6)
Plate reference : 8d6
WMC locus number : WMC Length of sequence : 302
Last updated : Mon, Oct 13, 1997 at 2:06 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : contains (CGG)5. Trimmed to Rsa1 at 5' end and to insert at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 302 Consensus sequence is :
..
GTACCGGAAC GGGCCGTGGA ACGGCCTGCG GTTCAGCGGC GAGCCGGAGA
TGGCGCCGGA CAACGGCAAC TTCCAGTTCG AGTTCGTGGC CAACGGCACC
GACGTATACT ACACGTTCCT GGTAGACGAC GGCGGCGGCG GCGGCAACGT
GGTCTCGAGG TTCGTGCTGA ACCAGTCGAG CCTGCAGCGC TACGTGTGGC
TGCAGCAGCA GCAGGCGTGG AGCCTCTACT GGTCGCTGCC CCGGGACCCG
TGCGACGGCT ACGCGCAGTG CGGCGCCTAC GGCGTCTGCG ACGCCAGCGC
CT
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wmc(8e6)
Plate reference : 8e6
WMC locus number : WMC Length of sequence : 6
Last updated : Mon, Oct 13, 1997 at 2:06 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : No sequence 15.9.97.
PCR Comments :
No sequence available for this clone
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wmc308(8f6)
Plate reference : 8f6
WMC locus number : WMC308 Length of sequence : 284
Last updated : Tue, Mar 17, 1998 at 12:27 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Contains (TG)14. Trimmed to Rsa1 at 5' end and to insert at 3' end. (GT)14 181 to 208.
PCR Comments : 61C anneal, polymorphic on acrylamide;
Forward primer details :
gAgcAgAggAAAATTcggATgA at 34 length 22 bases, Tm 64
Reverse primer details :
AAATgTTgTgAAAAAgcgAgcA at 223 length 22 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 211 bases.
Length of sequence : 284 Consensus sequence is :
..
GTACAAGTTA CTACAACACG CTCAAGAGCA TCCGAGCAGA GGAAAATTCG
GATGAAATTC ATGTGCTCCA GGCCGCACCA GATTAAGAAA AACCTACTGT
AGTATAGAAT TTTATTTTTT ATTTTTTTGC GGGTGATCCT AGTATACAAT
TTTGAGACCG TGTCTACGTT TTTTTTTTTT GTGTGTGTGT GTGTGTGTGT
GTGTGTGTTA ACCTGCCGCA GGTGCTCGCT TTTTCACAAC ATTTTACAGG
GATGGATTCA GCACGGCGCT CGCTTTTTCG CAAC
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wmc(8g6)
Plate reference : 8g6
WMC locus number : WMC Length of sequence : 245
Last updated : Mon, Oct 13, 1997 at 2:06 pm
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 245 Consensus sequence is :
..
GTACCGGGCG GCGGTGGCGG CGCAATATTG GCGGAGAAGT CCCCGGAGGC
TGCGTGTGGT TGGAGTCACG CCGCAGCGGC AGAAGTAGAG CGCTGCGCTG
GCTTGGAGAG CGGCATCGGA GGAGGGAGTT CGAGCTGCGG CGGCGGGAGT
CGAGCGGCGG CGGAGGAGGG AGTGAAGCGA CGGCGGCGGG AGTGGCCGTC
AAGATCTGCT TTTTCTTTTC TTTCAAACTG TCGGTGTGGC TTTTG
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wmc(8h6)
Plate reference : 8h6
WMC locus number : WMC Length of sequence : 137
Last updated : Mer 14 juin 2000 at 10:34
Owner : Rouse, Novartis Date at Agrogene : 15.9.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. (CA)21 1 to 42. No room for primers. Bases 107 to 121 show homology to TW1h08 bases 267 to 281 (15 in longest run, maxScore = 20).
PCR Comments :
Length of sequence : 137 Consensus sequence is :
..
CACACACACA CACACACACA CACACACACA CACACACACA CAGTAAAATA
ACTGCAACAT CGTGAATAAG AAAAAAAACC TAGACTATAC AATAAAGAAA
TTACGGCATA TTACATCCAC TAGGCATCAA AGTTCAC
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wmc309(14a1)
Plate reference : 14a1
WMC locus number : WMC309 Length of sequence : 250
Last updated : Mar 17 Nov 1998 at 10:59
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. (GGC)7 120 to 140.
PCR Comments : 61C anneal, product;
Forward primer details :
gATgcTTgggcAgTTTTAccgT at 56 length 22 bases, Tm 66
Reverse primer details :
gAAgAAgTgcATAgAgcAgggA at 211 length 22 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 177 bases.
Length of sequence : 250 Consensus sequence is :
..
TCGGCGGCGG GCGGTTTCGG CGTCGGCGTC GGCGCCGGCG CGCGCTTGTT
CTCGGGATGC TTGGGCAGTT TTACCGTTGG CGAGGAGGAG GAGAAGATGC
GGGAGAGGCT GTTCGCCCGG GCGGCGGCGG CGGCGGCGGC GGAGGCCATG
GGAAGGCGTC GGATGGGGGC GGTTTGGGGC GAGAGGAGCG GAATGGGCGA
ACGAGGGTTT TCCCTGCTCT ATGCACTTCT TCTGATCGTC TCCCAAGTAC
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wmc(14b1)
Plate reference : 14b1
WMC locus number : WMC Length of sequence : 6
Last updated : Wed, Oct 15, 1997 at 1:41 pm
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : No sequence 13.10.97.
PCR Comments :
No sequence available for this clone
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wmc(14c1)
Plate reference : 14c1
WMC locus number : WMC Length of sequence : 221
Last updated : Mon, Mar 16, 1998 at 12:52 pm
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. Member of 1g1 family.(CA)10 36 to 55, (CT)8 20 to 35.
PCR Comments :
Length of sequence : 221 Consensus sequence is :
..
CCATCTCTCT CTGTCTCTCC TCTCTCTCTC TCTCTCACAC ACACACACAC
ACACAACACA CATCAAGACT CCATCTCACA CACACATGCT CTAGGCGGAG
CATTTGTTCC TACCATCCTT CATCCAACCT TACCCGTATG ATAAACAATT
ACCTTTATTT ACTTGCATAA CATGGACAAA TTCCAGTTTA CTTTAGTAGT
CAGCAAACTT GTCGTCTGTA C
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wmc(14d1)
Plate reference : 14d1
WMC locus number : WMC Length of sequence : 88
Last updated : Mon, Dec 29, 1997 at 5:44 pm
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. Duplicate 11a12. No substantial microsatellite.
PCR Comments :
Length of sequence : 88 Consensus sequence is :
..
GTACCAAGCC CAATGGATCC TATCTTTCAC CCCTGGCGTG AGATCCACAT
CCTGCGTCCA GTCCACCAGA GCAATGAACT CGAGTAGA
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wmc(14e1)
Plate reference : 14e1
WMC locus number : WMC Length of sequence : 221
Last updated : Mar 22 DŽc 1998 at 9:41
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insewrt at 5' end and to Rsa1 at 3' end. Duplicate 11h12. No substantial microsatellite. Bases 144 to 221 show homology to 2c1.2 bases 1 to 78 (complement) (78 in longest run, maxScore = 149).
PCR Comments :
Length of sequence : 221 Consensus sequence is :
..
GGCAGAGGCC ACCAACGATG GGGTGCGAGA GAGAAAATTC CCGTAGAGAG
GGAAGAGAAG GTGTGTGCGC GTGAGAGTAG TCGGCATCGA GAGAACGTGT
TTGTTCGAGA GACACCGAGG AAGACTACTA TATATCGATG GTACGTGTAG
GCGGGAATTA AACAAAGGGA TGGTCTTATT GGTTTCGGGG ATATAGGGGA
AGAGTGAGAG GCGGGGGGTA C
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wmc310(14f1)
Plate reference : 14f1
WMC locus number : WMC310 Length of sequence : 432
Last updated : Mar 17 Nov 1998 at 10:59
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. (GT)10 329 to 348 plus (GT)4.
PCR Comments : tested 61C anneal, no product; 51C anneal, product; 51C anneal, polymorphic on acrylamide.
Forward primer details :
TgTgAggcTgggAggAAAAgAg at 205 length 22 bases, Tm 67
Reverse primer details :
gcTAggTTgTgTcccAcAATgc at 376 length 22 bases, Tm 66
Expected size of amplified fragment (Chinese Spring=) 193 bases.
Length of sequence : 432 Consensus sequence is :
..
GCGGGCGGCC GCGGTGGTCG ACGGAAGAGT CGTCCACCCA TTTGTCCCAC
TCCCCATCAT CGGCGCCGAC GCCATGGCCG CCGCCGCTTA AACCCTGCTG
CTTCCTCATC ACCGAGTCAA CAACCTCTCT CCAAAGTCCA AACTAAGCAA
AAGGACTCGC TCTACTGCGC TTTTGGACGT AGCAGATTGA TCGGTGGTTC
TTGGTGTGAG GCTGGGAGGA AAAGAGGTCG AGTTATATAG CCGCGCGGGT
GGGACATGGA CGGAGTGGGG GAGGCAGGGG ATGTTGGGGG AAGAAAGGCC
ACGTCCCTCT CCGTGTGTGT GTGTGTGAGT GTGTGTGTGT GTGTGTGTAT
GTGTGTGTCT TGAAGCGGTT GAGCCGCATT GTGGGACACA ACCTAGCTGT
GGCTCCGTCT GTAGCCATGG AGACTTTGGT AC
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wmc(14g1)
Plate reference : 14g1
WMC locus number : WMC Length of sequence : 331
Last updated : Tue, Mar 17, 1998 at 3:43 pm
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. Close relative of 8A9. No substanstial microsatellite beyond (CN)14 at 243-271.
PCR Comments :
Length of sequence : 331 Consensus sequence is :
..
GGAAAAGCCT ATACACAGAA TCTTACCAGC AGCGCTCTTC AAAATACCAC
GCTACTACTA TTTAGCAGCA GCGCGTGTCG TCAAAACGCG CTGCTGACAG
GAAAATAGCA GTAGCGCGTC CACCGCTAGT TATAGCAGTA GCGCACTATA
CTAAACAGCG CTACTGCTAT TTAGATTAGC TGTAGCGCGT TTTGGCAAAC
GCGCTACAAC TATCCCTACC TTATCCCGAC ACACACGACC GGCCCTCTCA
CTCACACTCT CACTCTCGCC CGCGTAACCG CCGTCGTGCG TCGCCGCCGC
CGCCACCTTC GTCCGTCCAC CGCCGAGGTA C
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wmc(14h1)
Plate reference : 14h1
WMC locus number : WMC Length of sequence : 406
Last updated : Tue, Mar 17, 1998 at 3:43 pm
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. (TTG)17 2 to 52, (TTG)12 101 to 136, (TTG)7 146 to 166, (TTG)9 203 to 229, (TTG)6 245 to 262, (TTG)15 266 to 310. No room for primers.
PCR Comments :
Length of sequence : 406 Consensus sequence is :
..
GTTGTTGTTG TTGTTGTTGT TGTTGTTGTT GTTGTTGTTG TTGTTGTTGT
TGYTGYTGYT GYTGTTGTTG CTGYTGYTGM TGTTGttgct gttgttgatg
TTGTTGTTGT TGTTGTTGTT GTTGTTGTTG TTGTTGTTAT TGTCGTTGTT
GTTGTTGTTG TTGTTGCTGT TGTTGGTGCT ATTGTTGGTG TTGTTGCTGC
CGTTGTTGTT GTTGTTGTTG TTGTTGTTGC TGTTGTTGCT GAAGTTGTTG
TTGTTGTTGT TGCTGTTGTT GTTGTTGTTG TTGTTGTTGT TGTTGTTGTT
GTTGTTGttg ACGTATGAAG CAAAGAAGGT TGTCTGCCCT CTAGGGTTAG
AGGTGCAAAA GATACATGCA TGCCCTAATG ACTGCATCCT CTACCGCGGT
GAGTAC
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wmc311(14a2)
Plate reference : 14a2
WMC locus number : WMC311 Length of sequence : 212
Last updated : Mar 17 Nov 1998 at 10:59
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. (GT)12 76 to 99.
PCR Comments :
Forward primer details :
gggccTgcATTTcTccTTTcTT at 37 length 22 bases, Tm 66
Reverse primer details :
cTgAAcTTgcTAgAcgTTccgA at 123 length 22 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 108 bases.
Length of sequence : 212 Consensus sequence is :
..
GTACGTGCGC GGCCGCCGCC GAGGGACCAT GATTCAGGGC CTGCATTTCT
CCTTTCTTCT TCTGAATTCC TCTGCGTGTG TGTGTGTGTG TGTGTGTGTT
CTTGCTTTTC TCTATCCGAA CTTCGGAACG TCTAGCAAGT TCAGAGTTTT
TTCCTCTGCG AATTTATTTT GGATCGGAGC TGTTCTGCAT ATCTCGGATC
TTTGTGATTT CA
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wmc312(14b2)
Plate reference : 14b2
WMC locus number : WMC312 Length of sequence : 407
Last updated : Mar 17 Nov 1998 at 10:59
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end, and to insert at 3' end. (GA)14 225 to 252, (GA)10 255 to 274.
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide (several loci).
Forward primer details :
TgTgcccgcTggTgcgAAg at 77 length 19 bases, Tm 73
Reverse primer details :
ccgAcgcAggTgAgcgAAg at 285 length 19 bases, Tm 70
Expected size of amplified fragment (Chinese Spring=) 227 bases.
Length of sequence : 407 Consensus sequence is :
..
GTACTACTCT GTCCGTCTTC CTCTGCTTTG TGTCTGCCTC AGCGAGGTAG
CTGAACTGAA CCACCTCGCG TGCGTTTGTG CCCGCTGGTG CGAAGCGAGA
CGAGAGAAGG GCGAGAAGGG TTTACCCTCG GCGGTGGCGG CGGCGGCGGC
GAGCTACGTG CGCATGGTCG CCTCTGGTTA ATCTGAGCGT AGGCCAGCTG
CAGATGCGTG GAGAGAAAGA TGAAGAGAGA GAGAGAGAGA GAGAGAGAGA
GAGGGAGAGA GAGAGAGAGA GAGACGGCGT CCAGCTTCGC TCACCTGCGT
CGGGGGAGAA GGCGGCGGCG GCGGGGAAGA GCTCGAGGTG CGTGCTGCGG
CGAGCTGGAT CCCCTTCCCT TCCCCTCGAG TGGGACACAG ATAAGGTGAC
ATGCACC
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wmc(14c2)
Plate reference : 14c2
WMC locus number : WMC Length of sequence : 462
Last updated : Wed, Oct 15, 1997 at 1:42 pm
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 462 Consensus sequence is :
..
CGACGCCCAG GAGGTGGTGC TTCGGATGAT AGAGACAAGC GGAGAGTAGT
CAGACCCCGC AGGCGGCGGC GGCGATGGCT TCTCTTCGTT GCAGCTACAA
CACCGTGGAT GGTCGGATCC TGCTGGTGGC ACTGGAAGCG GAGGTGGCCT
CCGCAAGTCA CAGTGGCACG AACAAAGATG GTCGTAACCT GTGAGGGCTA
AACATGGCGG TGGCGGAGGC GGCGGTCTCC GTTGGTCATC ACGGCGGCCC
TCGACAACCC CGACAAAGAG ATCAAATGGC GCAACGATGC AAATGGAGGC
CCGATGGCTG CAAAGCAACA GGCAATTGCT GACAGTGTTA AGAGAATTTT
CTTCTAGTGT GAGAGCAACG GCTATCACAC GAGGAGATTC ATGGCGCCGA
CTTCAGTTTC AGACACAAGT GAGCGAGAGG CGCGCTGGTG GTTCTATGCC
GACATCTAGT AC
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wmc(14d2)
Plate reference : 14d2
WMC locus number : WMC Length of sequence : 130
Last updated : Mon, Mar 16, 1998 at 1:05 pm
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. (GT)42 46 to 129. No room for primers.
PCR Comments :
Length of sequence : 130 Consensus sequence is :
..
AGAGCAATGC CTTAGCCGTT GCGGGGTGTG TGTGCGTGTG CGTGCGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
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wmc(14e2)
Plate reference : 14e2
WMC locus number : WMC Length of sequence : 336
Last updated : Wed, Oct 15, 1997 at 1:42 pm
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 336 Consensus sequence is :
..
CGGTGTCGAG GTTGGCCCGG CGAGTCGGCG ATCTCGGCCT TCTTGGCGGG
GAGTGCACAG TGGTGGCACG CCCACCAGTC TTGTCGCCAT CGGCTTGCGC
CTGAGCGTCT TGCCGCGGCT TCGAGGTGCT CGGTTGCCGG GGCTTGTCGC
CGTTGGCGAA GCCGATGAGG CTCTGAATGG TGGCCCTCCA GTCGTCGATC
TTGTGCAGCG CTGGAGGGTA GTCTAGTAGA AGTTGGGCTC GGGCCAACGC
TTCCTCTGGG GTCTTCGGCG GCGGCGGCGA GCGGCGCGAG GAGCGGGATA
TGCTCGGACT CCCAACTGGG TTGGAAGGAG CAGTAC
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wmc313(14f2)
Plate reference : 14f2
WMC locus number : WMC313 Length of sequence : 371
Last updated : Mar 17 Nov 1998 at 10:59
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at both ends. (CA)18 166 to 201.
PCR Comments : 51C anneal, polymorphic product on agarose; 51C anneal, polymorphic on acrylamide (several loci).
Forward primer details :
gcAgTcTAATTATcTgcTggcg at 78 length 22 bases, Tm 63
Reverse primer details :
gggTccTTgTcTAcTcATgTcT at 253 length 22 bases, Tm 59
Expected size of amplified fragment (Chinese Spring=) 197 bases.
Length of sequence : 371 Consensus sequence is :
..
GTACTACAAC GATATCCACC GCACACCATA ACGGCCACGG CCAAGGTAGG
ATCAGGAACA TTAATTTCAG CTCTAGTGCA GTCTAATTAT CTGCTGGCGG
AGAAGGAGCA TCTCAAAGAG ATAAACACAC GGAATGGAAA AGAAAACGGA
TGAAGTGAAT ATCTACACAC ACACACACAC ACACACACAC ACACACACAC
ATTGAAAAAG CAGCTCCCAA TTGAATCGTG GATCACGGCG GGAGTCACGG
AGAGACATGA GTAGACAAGG ACCCGGTTTT ATTGCTGTTG TGGTATACTA
TATCCAGTTC CAATAAGGCA TCGGTATGCT CACTCATTGA AGCAATACAC
ATACACTAGA GAGTAGAGTA C
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wmc314(14g2)
Plate reference : 14g2
WMC locus number : WMC314 Length of sequence : 460
Last updated : Lun 8 FŽv 1999 at 10:07
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. Bases 84-111 match part of 7G4 - primers do not include this zone. (GT)15 281 to 310, (GT)9 360 to 377. Bases 359 to 379 show homology to 26b2 bases 109 to 129 (21 in longest run, maxScore = 23).
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide (several loci).
Forward primer details :
AcAcggggTcTgATTgcTTTAc at 245 length 22 bases, Tm 64
Reverse primer details :
ATcgcTTTTTgAcAAgTgAggc at 411 length 22 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 188 bases.
Length of sequence : 460 Consensus sequence is :
..
CACGTATTAC GGTTTCGAGT TAATACAATT ATAGCATGAA CAATAGACAA
TTATCATGAA CAAGGAAATA CAATAATAAC CATTTTATTA TTGCCTCTAG
GGCATATTTC CAACACCAGA TTGTAAGGAG CTGACATGGC ATAACATTTA
CGCACACACG CCTGAATCTA AAGAATAAAA GCAATCTAGA CGGGATCTGC
CGATCTAGAT GGGATCGAGG CAGGGGGCTC TGCCGGGGCT GTCCACACGG
GGTCTGATTG CTTTACTGAT TTAGATCCAC GTGTGTGTGT GTGTGTGTGT
GTGTGTGTGT GGGCACGTGT GCGTGTGCGT GTGCCTGTGG GTGTGCGGCG
TGCGTGCATG TGTGTGTGTG TGTGTGTCAA TTCTTTGCCA AGTCAGCTCA
TTACAATCCA GCCTCACTTG TCAAAAAGCG ATTAAATGGG CTAAATCACT
CGATCAGTAC
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wmc315(14h2)
Plate reference : 14h2
WMC locus number : WMC315 Length of sequence : 394
Last updated : Mar 17 Nov 1998 at 10:59
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. Bases 1-83 (complement) (ie 5' side of microsatellite) match part of 5g10 (primers do not come from this area). (GT)23 107 to 152, (GT)8 165 to 180, (GT)8 187 to 202,
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide.
Forward primer details :
TAgTcgTTTccgcATAAAccAA at 85 length 22 bases, Tm 63
Reverse primer details :
TgAggTTcAcccTATATgccAA at 247 length 22 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 184 bases.
Length of sequence : 394 Consensus sequence is :
..
GTACAACCTC TGTAGAGTGT AAAACTATTC GAATAGCCGT GTCCACGGTC
AAGGATAGTT GGGTAATCCT GCTTAAACTA CGTATAGTCG TTTCCGCATA
AACCAAGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGGGTGGGT GTGGGTGTGT GTGTGTGTGT GGGTGGGTGT GTGTGTGTGT
GTTTAAAGGT GTTGTCTGAG AAAGATGATA TGGCAAGTTC AGTGACTTGG
CATATAGGGT GAACCTCAAG CATTTACTTT TCTAGTTAGA GACCAGCGTC
TTGGAGCTAA TGTGGGATCC GCTCAAGGAC CCACAGGTTT AGGTAAATAT
CTAATGCGTT CCCCAACTGG GGAGGTTATC TTTGGAGGGG AAAC
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wmc(14a3)
Plate reference : 14a3
WMC locus number : WMC Length of sequence : 619
Last updated : Lun 2 Nov 1998 at 10:06
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : No overlap between forward and reverse sequences. Trimmed to Rsa1 at both ends. Bases 183-sequence break (complement) match part of 2e8. No substantial microsatellite. Bases 196 to 206 show homology to 21e6.1 bases 110 to 120 (11 in longest run, maxScore = 42). Bases 252 to 294 show homology to 24f6 bases 260 to 302 (43 in longest run, maxScore = 99).
PCR Comments :
Length of sequence : 619 Consensus sequence is :
..
GTACATAGGT TCTGCTGAGG GCACGGCTCA ACAAGCCCAA AAAAAAACAA
GGCAGCCGCC TAAGGGCGAG GAAGGCGCCT AATAAGGCTC CGGCGGAGGC
GGCGGGGGCG GCGGCGACGG GGAACGGCCA TCGATCAGAG GTCGGCGATG
AAGGCGGAGA TGGCGTCACG GTCCTGGGGC GGCTAAGCGG CCGCCAAAGC
TGCAAGAAAC CAGAGAGTTT GAAGATTGCG TCAGTAGCTC GTCGAAGAGG
GGTGCGCTGG ATCACAAGCT TATTGCGGAT CGTCCAGAGG GTCCGGGCTA
GGACCCCAAT CTCAAGCCAC CTAAT
(break)
TTCGGCGC TCCAGAGCCA
ACCGAGATGG AAGTCCCGAT GCGGAGAACC GGAAGGAGCT GGACGACCGA
CTGCTAGAAC TGGGAGCCGC CAGTTCGCTG GCAGAAGGCG AGGGGCTGTC
CGCACAGATA TTTATTCCGG ATGATGTTGA GCCAAAGACT GCCCATGCCT
TGTGAGATGC GCCAAAGCCA TCGGGAGAGA AGGGCGATAT TCATACGCTT
AGAACACATA ATGCCCAGGC CGCCCTGCTC CCTGGGCTTG CAAATGTCCG
GCAACTAACC ATATGGTAC
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wmc(14b3)
Plate reference : 14b3
WMC locus number : WMC Length of sequence : 60
Last updated : Wed, Oct 15, 1997 at 1:43 pm
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : No insert.
PCR Comments :
Length of sequence : 60 Consensus sequence is :
..
GAATTCCTCG AGGCGCGCCT CGAGGGATCC TCTAGAGTCG ACCTGCAGGC
ATGCAAGCTT
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wmc(14c3)
Plate reference : 14c3
WMC locus number : WMC Length of sequence : 193
Last updated : Wed, Oct 15, 1997 at 1:43 pm
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. No substantial microsatellite.
PCR Comments :
Length of sequence : 193 Consensus sequence is :
..
GATCGGGCGA CAAGGATTCG CGACCCTGTG GCGGCGTGGA TCTGGCGGGT
TCAGGAGTGG AAGGCGGCAG ATTAGGCGGT GGCGGCGGCG AGAGATCCAG
TCACGCGAGC CGCGGCGAGG AGCTATGCAG ATTCCTGCCG CCGGCGAGCA
GAAGAGCACC AGAGGTTGCT GGCGAAGCGA ATCTACGACG AGG
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wmc(14d3)
Plate reference : 14d3
WMC locus number : WMC Length of sequence : 352
Last updated : Mon, Dec 29, 1997 at 6:07 pm
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 24-146 (complement) match part of 5c6. No substantial microsatellite.
PCR Comments :
Length of sequence : 352 Consensus sequence is :
..
CCGCCTTGCG CGCTGGCCCT CGATAGCGTG AGGAGCCGTC GCCGCCGCCG
CCGCATCCAT GTGAAGTGGC GTTAGCAGAT GACTTGAACC CACCGCCAGA
GTTGTTTCCC TAGAAGAGCG CGACTCTTTG GTCGAAGTTA CTCATCTGGG
CGAAGAGCTC ATCCAGGGTG ACCGGCTGTG TGCGGGCGTC GAGGGCAGAG
ACAAGCGGCT GATACTCCAT ATCGAAACTA GCAAGGATGT AGGAGATCAG
CTCGCTGTCA TCTTGAAGCG GTTTGCCTGC TGCAGCAAGC TCGTCCACCA
GGGAGCGCAT GTGCGCGAAG TATGTTGCCA CGGACTACGT GCCCCTCTGT
GC
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wmc(14e3)
Plate reference : 14e3
WMC locus number : WMC Length of sequence : 280
Last updated : Mon, Mar 16, 1998 at 1:14 pm
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insert at both ends. Similar to 7H7. (CAA)10 55 to 84, (CAA)9 169 to 195, (CAA)27 199 to 279. No room for primers.
PCR Comments :
Length of sequence : 280 Consensus sequence is :
..
CAGCAACTAC AGCAACAGCA ACAGGAACAG CAACAGCAAC AACAGCAACA
ACAGCAACAA CAACAACAAC AACAACAACA ACAACAGCAG CAGCAGCAAC
AACAACAACA GCAGCAGCAA CAACAACAAC AACAGCAGCA ACAACAGCAA
CAACAATAGC AACAATAACA ACAACAACAA CAACAACAAC AACAAGAACA
ACAACAACAA CAACAACAAC AACAACAACA ACAACAACAA CAACAACAAC
AACAACAACA ACAACAACAA CAACAACAAC
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wmc(14f3)
Plate reference : 14f3
WMC locus number : WMC Length of sequence : 177
Last updated : Mon, Dec 29, 1997 at 5:45 pm
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. Linker like sequence at 21-28. Bases 37-130 complement match part of 8a9. No substantial microsatellite.
PCR Comments :
Length of sequence : 177 Consensus sequence is :
..
GCTGAATTGC ACGCAGTTGC GCGTGGACTA GCGAATGCGC TACAACTATC
CCTACCTTAT CCCTACGCGC ACGACCGGCC CTCTCTCTCA CTCACACTCT
CACTCTCACC CGTGCACCGA TAACCGTCGT CGTGCGTCGC CGCTGCCGCC
GCCTTCGTCC GTCCGCCGCC GAGGTAC
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wmc(14g3)
Plate reference : 14g3
WMC locus number : WMC Length of sequence : 338
Last updated : Tue, Mar 17, 1998 at 4:35 pm
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to Rsa1 at 3' end, and to insert at 5' end (NB 5' linker corrupeted). Internal core similar to 5C12. (CAA)10 55 to 84, (CAA)10 86 to 115, (CAA)8 239 to 262. No roon for primers.
PCR Comments :
Length of sequence : 338 Consensus sequence is :
..
ACAACAAAAA CAACAACAAC AACAACAACA ACAACAACAA ACAACAACAA
CAACAACAAC AACAACAACA ATAACAACAA CAACAACAAC AGCAGCAGCA
GCAACAACAG CAACACCACC AGCAACAGCA ACAACAACAG CAACAACAGC
AACAACAGCA ACAACAGCAA CACCAGCAAC TACAGCAACA ACAGCAACAA
CAACAACAAC AACAACAACA GCAGCAACAA CAGCAACAAC AACAGCACCC
TCATAGACCG AAAGCGGAAG CGTTATGACA ACGCGGATGA TGTAGTCGTA
CGTCTTCACG ATCCGACCGA TCCTAGCACC AAAAGTAC
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wmc316(14h3)
Plate reference : 14h3
WMC locus number : WMC316 Length of sequence : 328
Last updated : Mar 17 Nov 1998 at 10:59
Owner : Hjortsholm, Sejet Date at Agrogene : 13.10.97 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to insert at 3' end. Bases 155-328 match part of 6h4 ( a member of 1g1 family). Reverse primer has 2 mismatches to 6h4. (CA)8 156 to 171.
PCR Comments : 61C anneal, product.
Forward primer details :
ATgAAcAcAgccAAgATgAAgg at 134 length 22 bases, Tm 63
Reverse primer details :
AgcgTgTgTgTgAgATggAgTc at 176 length 22 bases, Tm 65
Expected size of amplified fragment (Chinese Spring=) 64 bases.
Length of sequence : 328 Consensus sequence is :
..
AGAATAATAT ATGATAGACA AGTAATTTAT GCCGATCATG TCCCTCACCT
TTGTTTTTTC CGACAAAGAC TGAATTTAAT GACTCAAAAT GAAGCATTGA
GATAATACAA ACACAATGAG CTCCACAGAT AGAATGAACA CAGCCAAGAT
GAAGGCACAC ACACACACAC ACTAAGACTC CATCTCACAC ACACGCTCTA
GGTGGAGCAT TTGTTCCTAC CACCCTTCAT CCAACCTTAC CGGTATGATA
AACAATCACC TTTATTTACT TGCATAACAT GGACAAATTC CACTTTTATT
TAGTAGTCAG CAAACTTATC ATTTGTAC
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