Wheat microsatellite WMC 25/06/01
wmc(2c7)
Plate reference : 2c7
WMC locus number : WMC Length of sequence : 303
Last updated : 14 Oct 1996 at 15:24
Owner : Wang, Utah Date at Agrogene : 14.8.96 Public Domain : Yes
Comments : (CT)19 258 to 295, microsatellite too close to end to design primers
PCR Comments :
Length of sequence : 303 Consensus sequence is :
..
AGCGGGTTGC GGGAGAGTGG ACCGCTGAAT ATAGATGAGG GAAGGCGATG
GAGGTGTTGA GGAAGATGCG GAGTTGTTGG TGTAGATCGC CGTCACACGA
TGACTGCCCC GGCGACGTTC CGGCGCCACA GGGAGAGACG GGGAGAGAGC
CCCCCTCCAT CTTATTCTTA TTCCTTGGAC TTCGACCTAG ATGGGAGGAG
AGTTTCCCCT CTGGTCCATG GCCTCCATGG CGGCGGAGAG CCCCTCCAAG
ATTGGATCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTTAGTC
CAC
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wmc(2d7)
Plate reference : 2d7
WMC locus number : WMC Length of sequence : 437
Last updated : Wed, Aug 27, 1997 at 4:24 pm
Owner : Wang, Utah Date at Agrogene : 14.8.96 Public Domain : Yes
Comments : (GT)13 81 to 106, too difficult to design primers. (Near) duplicate of 2b12.
PCR Comments :
Length of sequence : 437 Consensus sequence is :
..
AATGTGTGTG AGTGTGTGCT TTGTATGTGT GTGTGTCAGT GAGTGATGTT
GGTGTGCGTA TGGGTGGATG TGCTGTTGAT GTGTGTGTGT GTGTGTGTGT
GTGTGTGATG TTGGTGTGTG TGTTGTGGGT GTTGTTGTTG AGATATGATT
GACACAACTT CATTCTTTCA TGCAGGACAT GCATCTATTT TGACAATAGA
GAGAGTGAAT TCCGTTGCAC GCTTCAAGGG TAATCTCTTC CTATTCATGT
GTAGGTTTTC GTTATTTGTA GATCACCTAA ATAGTCGCGT AACCTAGGTG
TCTCCCGTTC GGAAGGGTTG TATCTATAAA TATGCAAGTC TTTGCATATT
TATAACCTCA ACACTTTCGA ATTGTCCACG TTTTCCATGG ACAACCCGAG
GATGTGTAGG CAGGTCGTTT TCATGATGTT AGTCCAC
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wmc(2e7)
Plate reference : 2e7
WMC locus number : WMC Length of sequence : 253
Last updated : 14 Oct 1996 at 15:24
Owner : Wang, Utah Date at Agrogene : 14.8.96 Public Domain : Yes
Comments : No substantial microsatellite. Near duplicate of 7e1, 11C10.
PCR Comments :
Length of sequence : 253 Consensus sequence is :
..
CATCGTCGGG GTCGTTGGGG AAGGCACTCC TCCACTCGTC GACGTCGATC
TCCTCGTCCT CAGGGCCTAG CTCGACGCCC TCCGCACCGC CGTCGCCGCC
GCCTTCGACC TCATCGTCTA AGGAAAGCGC GATAACCTCG CCGCACTTCG
CGCCGCCGTC CTCGCCGCCT TCGACCTCAT CATCGGAGGA GAGCGCGGTA
ATCTCGCCGC CCTCCGCGCC GGCAAGGATC GCCCGCTCCG CCTCCTAGTC
CAC
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wmc(2f7)
Plate reference : 2f7
WMC locus number : WMC Length of sequence : 226
Last updated : Mar 30 mai 2000 at 9:54
Owner : Wang, Utah Date at Agrogene : 14.8.96 Public Domain : Yes
Comments : No room for primers (CAA)6 158 to 175, Bases 2 to 35 show homology to 26b8 bases 401 to 434 (complement) (34 in longest run, maxScore = 39).
PCR Comments :
Length of sequence : 226 Consensus sequence is :
..
ACTACTACTA CTACTACTAC TACTACTACT ACTACTACAA TAGCAACAGC
AACAACAACA GCAACAAGAA CAGCAACAGG AACAGCAGCA GGAACAGCAG
CAGGAACACC AACAACAGCA GTAATAGCAA CAGCAGCAGG AACAGCACCA
GCACCAGCAA CAACAACAAC AACAAAACTA CCGCAAGGGC TCACGATACT
ACCGCGGCGA ACCACGGTTA GTCCAC
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wmc21(2g7)
Plate reference : 2g7
WMC locus number : WMC21 Length of sequence : 190
Last updated : Wed, Aug 20, 1997 at 1:52 pm
Owner : Wang, Utah Date at Agrogene : 17.9.96 Public Domain : Yes
Comments : (GA)37 29 to 102. Faint smeary PCR product after amplification at 61C anneal. Matches 3e6.
PCR Comments : 61C anneal, smear;
Forward primer details :
cgcTgccgTgTAAcTcAAAATc at 6 length 22 bases, Tm 66.0
Reverse primer details :
AgTTAATTgggcgcTccAAgAA at 120 length 22 bases, Tm 66.0
Expected size of amplified fragment (Chinese Spring=) 136 bases.
Length of sequence : 190 Consensus sequence is :
..
AGGAACGCTG CCGTGTAACT CAAAATCAGA GAGAGAGAGA GAGAGAGAGA
GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
GATGGGGGGA CTCACGGGGT TCTTGGAGCG CCCAATTAAC TCTAGAACGA
CGAAATAGTA GATGAATGCG CCTAGTCTCT GTTAGTCCAC
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wmc(2h7)
Plate reference : 2h7
WMC locus number : WMC Length of sequence : 265
Last updated : 26 Sep 1996 at 8:59
Owner : Wang, Utah Date at Agrogene : 19.8.96 Public Domain : Yes
Comments : No substantial microsatellite.
PCR Comments :
Length of sequence : 265 Consensus sequence is :
..
AGAAATGTGT GAGCTGTTGA TTGTAGATTG GGGGGAGGGA GGGGCCCACC
ACCATGAAAA TCAGGGGAGG AGAGAGAGGC AATTTACGTT AACCCTTTCA
TAGGTTCCCG TAGATGTAGA AAGATGTGAC CGATCCTGCA ATATAGGCCG
TCCGATCTAT ATCTAACGGA TAGGAAGGAA ACTATGACAA TTTACCCGCA
CTCCTCTCCA CACTTGCAGA TAAGGCTATC CCTCGTTCAT CCTCCTTCTT
GTCCAGTTAG TCCAC
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wmc(2a8)
Plate reference : 2a8
WMC locus number : WMC Length of sequence : 266
Last updated : 26 Sep 1996 at 8:59
Owner : Wang, Utah Date at Agrogene : 19.8.96 Public Domain : Yes
Comments : Multiple small repeats No substantial microsatellite.
PCR Comments :
Length of sequence : 266 Consensus sequence is :
..
GAATTCCTCG AGGCGCGTGG ACTACCGCCG CCGCCGCTGC AGCCATGCGC
CTGTTGTCGG CTGCTGCCGT TGTGCTTCGT CAAAACATGC AGATCGAACC
CTCTTGGCGA AAACACCAAG ATCGAGCCAA TCTATCGCGC CGCCACTTTC
GACTGCCAGC TGCTAGCCGC CCGCCACCGC CGCGCCTTCG GCACCGCCAC
CACACATCAC TGTGGCTGTA GGGGCGTGAG CGGGCGGCGC CCGCACACCC
CTAGCAGTTA GTCCAC
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wmc22(2b8)
Plate reference : 2b8
WMC locus number : WMC22 Length of sequence : 182
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Wang, Utah Date at Agrogene : 19.8.96 Public Domain : Yes
Comments : (GT)24 102 to 149.
PCR Comments : tested 51C anneal, no product;
Forward primer details :
ATcATTggTTTccTcTTcAcTT at 14 length 22 bases, Tm 58.0
Reverse primer details :
gTggAcTATTTAAcATcTTcAT at 161 length 22 bases, Tm 52.0
Expected size of amplified fragment (Chinese Spring=) 169 bases.
Length of sequence : 182 Consensus sequence is :
..
AACCTTGATC ATCATCATTG GTTTCCTCTT CACTTGGTGT GGGCATCACA
GGAACATTTT CCTGAGCTAC ACCACTCTCC CGTTTGAAAA GTAATATATA
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
GAAAATGTTT ATGAAGATGT TAAATAGTCC AC
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wmc(2c8)
Plate reference : 2c8
WMC locus number : WMC Length of sequence : 452
Last updated : Wed, Aug 20, 1997 at 10:29 am
Owner : Wang, Utah Date at Agrogene : 12.9.96 Public Domain : Yes
Comments : (GT)10 378 to 397, (GT)8 428 to 443, Microsatellites too close to end for primers. Matches 6a6, 6b6, 7a2, 11H2 (part).
PCR Comments :
Length of sequence : 452 Consensus sequence is :
..
AGAGATGCGT GTGCGTCTGG ATTCTGTATA CGTGGAAGGA GAAGAGACAA
CATGTTTGAT GAGAGAGCAG GAAAAACATG GATGAGAGGG GAAGGATCTT
GTGGGTTGAG GGACTGGCAA TTTTGTGCGG GGGAGAGAGG GATTGGTAAT
TTTGTGCAAG AGAGAGAGAG GGTGGGGGAG GAGTCAGTCA CCCGTCGTCA
CATCACCCTG CTTCCAAATG ACCCCGCATT CTCTAGCGCG ATGTGGTCGC
CGTCTTCCAT CTGGTCGTTG CCCTCTTTGA AGATTGAGGT GCTGTCCATG
TTGGGGTTCA CACAGAAGCA CAAGCGAGAG TGTTCCCCGT ATAACCTTGG
ATGGGGATGA ATTGTGTGCT CAGGGGAGTG TGTGTGTGTG TGTGTGTTGT
GCTGCGTGTG TCTCTTTCTC TCTCTCTGTG TGTGTGTGTG TGTCTAGTCC
AC
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wmc(2d8)
Plate reference : 2d8
WMC locus number : WMC Length of sequence : 540
Last updated : Mer 14 juin 2000 at 10:35
Owner : Wang, Utah Date at Agrogene : 19.8.96 Public Domain : Yes
Comments : large numbers of small microsatellites incuding (TGCT)4 No substantial microsatellite. Bases 60-112 match part of 4B3. Bases 73 to 105 show homology to 25f6 bases 292 to 324 (complement) (33 in longest run, maxScore = 77). Bases 46 to 66 show homology to TW1g09.3 bases 104 to 124 (complement) (21 in longest run, maxScore = 27).
PCR Comments :
Length of sequence : 540 Consensus sequence is :
..
CATGATTACG CCAAGCTTGC ATGCCTGCAG GTCGACTCTA GAGGATCCCT
CGAGGCGCGT GGACTACTGC TGGCTGCCCC TTGTGCCGTC GCTGCTGTTT
GCCGCTGCCG CCGCCTTCTA CGTCGCTCCT GTTGCTGCCG CTACTGTCTG
TCGATGCTGC TGCTCGCTAC CGCCGCTGCT ACGGCCGGCC ATGGCCGAGC
TGTGAGTGTA GTGTGTGTGT TCTGCATAGT GTGTGTCCGT GCAGCTGGAC
ATGGCCGTGT GCGCCCGTGT GTGCTGAGAG CAGCGTGGTG TGTGTGTGGC
AGTGTGGTGT GGTGTGTGAG TGCGCCGTGC GTGTGGCCGG CTGGGCTATG
CCCAATAGTG GCCAAGCCCT TGCTTAGATT TAGTTAGTCC ACGCGCCTCG
AGAATTCACT GGCCGTCGTT TTACAACGTC GTGACTGGGA AAACCTGGCG
TTAACCCACT TAATCGCCTT GCAGCACATC CCCCTTCGCA CTGGGGTTAT
AACAAAAAGC CCCNCAATTC CCTCCCANAA TTGGCCACCN
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wmc(2e8)
Plate reference : 2e8
WMC locus number : WMC Length of sequence : 565
Last updated : Mar 30 mai 2000 at 9:54
Owner : Wang, Utah Date at Agrogene : 19.8.96 Public Domain : Yes
Comments : CA repeat. Too close to end to design primers(GT)13 511 to 536, Bases 345 to 373 show homology to 24c4 bases 79 to 107 (29 in longest run, maxScore = 53). Bases 13 to 57 show homology to 24e8 bases 229 to 273 (complement) (45 in longest run, maxScore = 34). Bases 37 to 56 show homology to 10b4 bases 476 to 495 (complement) (20 in longest run, maxScore = 27).
PCR Comments :
Length of sequence : 565 Consensus sequence is :
..
CATGATTACG CCAAGCTTGC ATGCCTGCAG GTCGACTCTA GAGGATCCCT
CGAGGCGCGT GGACTAGTGG AACGGTGGAG GATACTAACC ACATCTTCTT
CTCCTGCTCC ACAGCCCAAT TCCTATGGTC CTGCTTCCGC GAGACGGTCG
GTGGACAGTG GTGCAACACC AACTTCCTTG ATCTGCTTGC GGAGATCCAC
GCTGCCCCTC CTCGCTACCG CCATATTAGA TGGTTGTGCG TTGGAGTCCT
CGCCTGGATG CTTTGGACCA TCCGCAACAG GCTCGTTATT CAGAAAGTGC
CTCTTCGACG TGCGACTGAC GCAATCTTCA AAATGTGTGG TTACTTGCAG
CTTTGGCGGC CGCTTAGCCG CCCTCAGGAA CGGGCGGACG CCATCAACAC
CATCCTCGCC GAACTTTGCT CGATGGGCTT CCGCATGGGA CTCCGCTGCC
GNCCCTCCTC CNGAGNCCGA ATGAACCTGC TACATGAGGG CCAANGTGTG
TGTGTGTGCT GTGTGTGTGT GTGTGTGTGT GTGTGTAANN TTTTGNNNAA
AAAAAAAAAA ACCCA
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wmc(2f8)
Plate reference : 2f8
WMC locus number : WMC Length of sequence : 323
Last updated : 14 Oct 1996 at 16:50
Owner : Wang, Utah Date at Agrogene : 21.8.96 Public Domain : Yes
Comments : Multiple microsatellites. Member of 1G1, 2F8 2D11, 2H11, 2A12, 6G1, 6H3, 6H4, 6B11, 7e3, 7h5, 7b6, 8a11, 5h10, 5d12, 11d4, 9H3. etc. No room for primers. Bases 126-168 match part of 2c10/
PCR Comments :
Length of sequence : 323 Consensus sequence is :
..
AACAGATGAT AAGTTTGTTG ACTACTAAAG TAAAGTGGAA TTTGTCCATG
TTATGCAAGT AAATAAAGGT GATTGTTTAT CATATGGGTA AGGTTGGATG
AAGGGTGGTA GGAACAAATG CTCCGCCTAG AGCATGTGTG TGTGAGATGG
AGTCTTAGTG TGTGTGTGAG AGAGAGAGAT GAGAGAGAGA TGGAGTCTTA
GTTTGTGTGT GTGTGTGAGA GAGAGAGAGA TGGAGTCTTA GTGTGTGTGT
TGGGGGGGGG GGGTGCGTGC ATGCATGCAT GCATGTGTGT GTGTGTTTGT
GTGTGTGAGA GAGAGTAATC CAC
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wmc(2g8)
Plate reference : 2g8
WMC locus number : WMC Length of sequence : 0
Last updated : 15 Nov 1996 at 19:15
Owner : Wang, Utah Date at Agrogene : 30.8.96 Public Domain : Yes
Comments : No insert.
PCR Comments :
Length of sequence : 0 Consensus sequence is :
..
CGAGGGATCC TCTAGAGTCG ACCTGCAGGC ATGCAAGCTT
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wmc(2h8)
Plate reference : 2h8
WMC locus number : WMC Length of sequence : 150
Last updated : 30 Sep 1996 at 14:10
Owner : Wang, Utah Date at Agrogene : 30.8.96 Public Domain : Yes
Comments : (GT)17 91 to 124, (CT)29 33 to 90, not enough room for primers
PCR Comments :
Length of sequence : 150 Consensus sequence is :
..
AACAAGCTAC CGGGTTAGTG CTTAACATTC AGCTCTCTCT CTCTCTCTCT
CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT GTGTGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGTGCGTGT GTGTAAACTC GTTAGTCCAC
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wmc23(2a9)
Plate reference : 2a9
WMC locus number : WMC23 Length of sequence : 938
Last updated : Lun 30 oct 2000 at 16:59
Owner : Wang, Utah Date at Agrogene : 30.8.96 Public Domain : Yes
Comments : Big insert with 2 large CT microsatellites. Numerous small motifs(CT)22 55 to 98, (CT)18 853 to 888. Primers flank 1 microsatellite only. Product of right size , maybe polymophic but too large and smeary to be sure. Reduce size of fragment? Bases 852 to 867 show homology to 22d11 bases 118 to 133 (16 in longest run, maxScore = 20). Bases 26 to 98 show homology to TW4a04 bases 88 to 160 (complement) (73 in longest run, maxScore = 40). Bases 55 to 94 show homology to TW7g02.2 bases 83 to 122 (complement) (40 in longest run, maxScore = 50).
PCR Comments : 61C anneal, product;
Forward primer details :
ATTcgcTcATAcgATAgggTTg at 11 length 22 bases, Tm 62.0
Reverse primer details :
AgAggcTggTgTAgTTggTTTg at 303 length 22 bases, Tm 62.0
Expected size of amplified fragment (Chinese Spring=) 314 bases.
Length of sequence : 938 Consensus sequence is :
..
AACCAATATC ATTCGCTCAT ACGATAGGGT TGGCTGGCTA GTGATATTTT
TTCACTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTTT
TTCTCTTTCC TCTCATTTAC CTAGGAGCAC GTGAAGAGGT TGGGCATTTG
TTGCCTTCCA CTATGTGGCC GATGCCATAT TTCTCAAAAG TATACCACAT
AATACGCATC GATGTCCAAT AAAAAGATTT TGCCACCGCT CTCGCGATGC
ATGAGAGTTG GCACCGCAGT GCACACAGAC CCACATGTAT AAAGAAATCA
ATCAAACCAA CTACACCAGC CTCTCACTCT TCCAAACAAG TGTTTTTATT
GCCTCAGTCC TCTCTCTCCC ATGCAAGTGT TTTTTCATTG CGTGAGTTAA
TTTGGCACCG GAGCAAATTA GGTGATCCAA ATTGGGGCAC TTGGAGAGCA
ATGGGGGTAG AAAGAGGGGG GCAGGGGGGG GTTTTTGGGG AAGAAANTGA
CCTGGGCCNG GGGGGGAGGG GGAACGNCCC GATATATTTN GAAAAGCGGC
GGCNTGCGAG AGGAGATNTG NTTGGTGATG CAAGGNTCGG TGGNGGATTT
TCAACGCCGA ACCGNCCGCC ATGGGCGAGC GGTGGATNTG GTCGACGATG
GTGCTTCTCC CACTGTCATC GCCTCGCAGG CTCGTTGTTC TCCTCCNGAC
GCTCACCAGA TCTGTCGACG CTCACAAGAT TTGCCGACGC TGAGAGAAAC
ATGCAGGGGA GCGACTGCGT TGGCGTGTGG AAAGAGATGA GGTTGCGTGC
GTGGGGAGAA CGCGAGAGAC TGGCCAATCA TGAAGAGCAA AATACGTGAA
TTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCC TCTCTCTCTT
AAAGACAAGT ATCCACTACA CGCACAGTGT TAGTCCAC
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wmc24(2b9)
Plate reference : 2b9
WMC locus number : WMC24 Length of sequence : 194
Last updated : Thu, Jun 11, 1998 at 11:27 am
Owner : Wang, Utah Date at Agrogene : 17.9.96 Public Domain : Yes
PIC Value : 0.72
Comments : (GT)28 25 to 80.
PCR Comments : 51C anneal, polymorphic product on agarose; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
gTgAgcAATTTTgATTATAcTg at 4 length 22 bases, Tm 54
Reverse primer details :
TAcccTgATgcTgTAATATgTg at 134 length 22 bases, Tm 57
Expected size of amplified fragment (Chinese Spring=) 152 bases.
Length of sequence : 194 Consensus sequence is :
..
AACGTGAGCA ATTTTGATTA TACTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TTGGTGTGCA ACATCTTTGT
TTTTTTTATT GTTGGATGGA ACACCGGTTA CAGCACATAT TACAGCATCA
GGGTAGTTCT CAAACCACAT ACTTGGTGTC CATAGCTAAC CCTG
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wmc25(2c9)
Plate reference : 2c9
WMC locus number : WMC25 Length of sequence : 280
Last updated : Thu, Jun 11, 1998 at 11:27 am
Owner : Wang, Utah Date at Agrogene : 17.9.96 Public Domain : Yes
PIC Value : 0.62+0.36
Comments : (GT)26 193 to 244. >2 Polymorphic loci.
PCR Comments : 51C anneal, polymorphic product on agarose; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
TcTggccAggATcAATATTAcT at 102 length 22 bases, Tm 59.0
Reverse primer details :
TAAgATAcATAgATccAAcAcc at 246 length 22 bases, Tm 53.0
Expected size of amplified fragment (Chinese Spring=) 166 bases.
Length of sequence : 280 Consensus sequence is :
..
AGTCACGCGG GCATCGTTTC TTGAGATGAT TATGTTCGGT GGGGTTGTGG
GTTGTGGGAG GTGTGTATTG TAGCCGCCAC TTCGTTGTCT CTCGGCACCT
GTCTGGCCAG GATCAATATT ACTCTTTTTC TATTTGTTTT TTATTTTCCT
ACGCCCTGAG CATAACGTTG GTCTTGTATG ACTTTACTCT TTGTGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTTGGTGT
TGGATCTATG TATCTTAATA GTTAGTCCAC
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wmc26(2d9)
Plate reference : 2d9
WMC locus number : WMC26 Length of sequence : 471
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Wang, Utah Date at Agrogene : 21.8.96 Public Domain : Yes
Comments : Three microsatellites in this insert. Duplicate of 2H9 (both inserts), first insert has some hmology to 11e3, but is not a duplicate. Weak homology to 13e4, bases 98-194 match paart of 13e4. (CA)14 2 to 29, (CA)9 189 to 206, (CAA)20 368 to 427. Multiple inserts (2) joined 310-331 by linkers. The primers surround the CAA repeat only in second insert.. Main band is not right size. Bases 16 to 124 show homology to 17e12 bases 95 to 203 (complement) (109 in longest run, maxScore = 83).
PCR Comments : 61C anneal, polymorphic product on agarose; 51C anneal, product;
Forward primer details :
TgTATTcccATgAAccccAcTg at 310 length 22 bases, Tm 66.0
Reverse primer details :
TcTcccAATTgATTTggAAggc at 432 length 22 bases, Tm 66.0
Expected size of amplified fragment (Chinese Spring=) 144 bases.
Length of sequence : 471 Consensus sequence is :
..
ACACACACAC ACACACACAC ACACACACAC CTAGTTGCGA GTCGATGGTC
AGGTTGCAAT TGGGGACCCT TGACAAAATA CACACTTCCC TAGTTGTGAG
TCGATGATCG ACATGCAACT GGGGGGCACG ACAAAACACA TACACCCGTA
GTTGCGAGTC GATGGTCAAC ATGCAACTGG GGACCCTCCA CACACACACA
CACACAGAGA CACACACACA CATATACACA CCTAGTTGCG AGTCGATGGT
TGACATGCAA CTGGGTTAGT CCACGCGTGG ACTAGCTTCT AAATCTTCCA
GACTTATCTT GTATTCCCAT GAACCCCACT GCCCGATGCA CCTTTCACAC
CTCTACAGCA ACAATAACAA CAACAACAAC AACAACAACA ACAACAACAA
CAACAACAAC AACAACAACA ACAACAACAT CGCCTTCCAA ATCAATTGGG
AGAGCCTGCA CGTTAGTCCA C
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wmc(2e9)
Plate reference : 2e9
WMC locus number : WMC Length of sequence : 142
Last updated : Mer 23 D残 1998 at 11:06
Owner : Wang, Utah Date at Agrogene : 17.9.96 Public Domain : Yes
Comments : No substantial microsatellite. Matches 4H2(2). Bases 2-92 (ie. 5' side of small microsatellite) match part of 13H3 (complement). Bases 33 to 61 show homology to 12h9 bases 74 to 102 (complement) (29 in longest run, maxScore = 68), 2e9 has precedence. Bases 3 to 123 show homology to 2e5 bases 4 to 124 (121 in longest run, maxScore = 82). True duplicate with 2e5, 2e9 has priority.
PCR Comments :
Length of sequence : 142 Consensus sequence is :
..
AACATGGTGC TTTGTGTTGT GTAACGTGGA GGCACATATA CATAATTAGA
GAGTGAGTGT GCGAGATACA CATGCAGACA TGGGGAGAGA TGAGGATCCA
GATTAATGGG TGTTTGTGCG TGTACTGTGT GTGTTTGTGC AC
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wmc27(2f9)
Plate reference : 2f9
WMC locus number : WMC27 Length of sequence : 518
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Wang, Utah Date at Agrogene : 30.8.96 Public Domain : Yes
Comments : (GT)25 153 to 202.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
AATAgAAAcAggTcAccATccg at 37 length 22 bases, Tm 62
Reverse primer details :
TAgAgcTggAgTAgggccAAAg at 404 length 22 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 389 bases.
Length of sequence : 518 Consensus sequence is :
..
AACAGGGGTG GGGGGCTTCT CCATTACTTT GTTTGCAATA GAAACAGGTC
ACCATCCGTC GTTGGTGGCT TTCCACGACG ATCCGGAGGG CACCAACTGC
CAGCAAGCCT CCTCGTTAGA CTTAGATCCA ACCGCCACCA AGCTAGATAG
ATGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGCAGTGCA AACATCTTAG ATTTTTTTGT TGCCAGGGCA GACATCTGAA
GATTAATTAG TGAGTGTTAT GCTTCATAGT TGAAATGGAT GGTTCCTCGA
AAAAAAAAGA GTTGAGAAGG ATTTTGAAGG AAAATCAAGA GATCATATGT
TCTTCAATGG TGTGCACAAC AGAAAAAGGG TGTTCTTCCG TGAGCTGGCT
TCGCTTTGGC CCTACTCCAG CTCTAACTTT TCTAGGCTTC GGATCCAATG
CTCCCTACGA GCAGCTACTT CACCGCTTCG TTAGTTGACC CCATGATTCG
GCACATGCGT TAGTCCAC
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wmc28(2g9)
Plate reference : 2g9
WMC locus number : WMC28 Length of sequence : 244
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Wang, Utah Date at Agrogene : 21.8.96 Public Domain : Yes
PIC Value : 0.61
Comments : One small (CA) and one large (T)(CA) compound.(GT)29 132 to 189
PCR Comments : 51C anneal, polymorphic product on agarose; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
ATcAcgcATgTcTgcTATgTAT at 42 length 22 bases, Tm 59.0
Reverse primer details :
ATTAgAccATgAAgAcgTgTAT at 208 length 22 bases, Tm 55.0
Expected size of amplified fragment (Chinese Spring=) 188 bases.
Length of sequence : 244 Consensus sequence is :
..
AATCGACAAG GTCTATCCGG TTGAGCTTTG CTGCTAGCTA GATCACGCAT
GTCTGCTATG TATGCATGGT TGCTTGTATT TATGTGTGTT TGTGTGTGTG
ATTAATTGTT TTGTTTTGAT TGGATATTTG AGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG AAAAAAAGCA
CGTGCAAATA CACGTCTTCA TGGTCTAATT ACATGTTAGT CCAC
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wmc(2h9)
Plate reference : 2h9
WMC locus number : WMC Length of sequence : 471
Last updated : 30 Sep 1996 at 14:16
Owner : Wang, Utah Date at Agrogene : 21.8.96 Public Domain : Yes
Comments : Duplicate of 2d9 (both inserts), first insert is a relative of 11e3, but not a duplicate(CA)14 2 to 29, (CA)9 189 to 206, (CAA)20 368 to 427. Multiple inserts (2) joined 269-282 by linkers.
PCR Comments :
Length of sequence : 471 Consensus sequence is :
..
ACACACACAC ACACACACAC ACACACACAC CTAGTTGCGA GTCGATGGTC
AGGTTGCAAT TGGGGACCCT TGACAAAATA CACACTTCCC TAGTTGTGAG
TCGATGATCG ACATGCAACT GGGGGGCACG ACAAAACACA TACACCCGTA
GTTGCGAGTC GATGGTCAAC ATGCAACTGG GGACCCTCCA CACACACACA
CACACAGAGA CACACACACA CATATACACA CCTAGTTGCG AGTCGATGGT
TGACATGCAA CTGGGTTAGT CCACGCGTGG ACTAGCTTCT AAATCTTCCA
GACTTATCTT GTATTCCCAT GAACCCCACT GCCCGATGCA CCTTTCACAC
CTCTACAGCA ACAATAACAA CAACAACAAC AACAACAACA ACAACAACAA
CAACAACAAC AACAACAACA ACAACAACAT CGCCTTCCAA ATCAATTGGG
AGAGCCTGCA CGTTAGTCCA C
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wmc29(2a10)
Plate reference : 2a10
WMC locus number : WMC29 Length of sequence : 253
Last updated : Mer 14 juin 2000 at 10:34
Owner : Wang, Utah Date at Agrogene : 21.8.96 Public Domain : Yes
Comments : Large (CA)34 microsatellite(CA)33 97 to 162. PCR products obtained at anneal 61C. Redesign primers? bases 2-130 (ie. 5' side of microsatellite) match part of 7g7, bases 139-245 ie 3' side of microsatellite match 7f11. Duplicate of 8f3. Bases 32 to 61 show homology to TW1g08.2 bases 265 to 294 (30 in longest run, maxScore = 28).
PCR Comments : 61C anneal, smear;
Forward primer details :
TccTTgTAAcgTgggcTggcTg at 11 length 22 bases, Tm 70
Reverse primer details :
AgcccggAggTggTcgAcTgAA at 166 length 22 bases, Tm 73
Expected size of amplified fragment (Chinese Spring=) 177 bases.
Length of sequence : 253 Consensus sequence is :
..
AACATTGAAC TCCTTGTAAC GTGGGCTGGC TGGGGTCCTG GCGCACTCTA
TATAAGCCAC CCCCTCCACT GGCACAAGGG TTCGCACCCC CTGTAACACA
CACACACACA CACACACACA CACACACACA CACACACACA CACACACACA
CACACACACA CATAATTCAG TCGACCACCT CCGGGCTCCG AGACGTGGGG
CTATTACTTC CTCCGCGAAG GGCCTGAACT CGTAAAACTC GTGTGTAGTC
CAC
Go back to index
wmc(2b10)
Plate reference : 2b10
WMC locus number : WMC Length of sequence : 265
Last updated : 26 Sep 1996 at 8:59
Owner : Wang, Utah Date at Agrogene : 30.8.96 Public Domain : Yes
Comments : No real microsatellite, odd GC rich sequences No substantial microsatellite.
PCR Comments :
Length of sequence : 265 Consensus sequence is :
..
AGTTGAGTCG CACGGGAGGC GGCGGCCGGG TCGTGCGGAC GGCAGAGCGG
GGGAGACGGC GGCGAGTCAG CTCCGTCGAG GGCGAAAACT CAGCAGCGAT
TTGGCCATGA CAGAAGCAAC GGCTCAGAGG GATGGCGACT TTAGGCCAGA
AGCTGGAGGG TTGGAGGCGT GAGCCGGCGA TGGCGGAGGC GCGGTGGTTC
AGTGGTGTGA TGGCTGTACG TTGGCCACAA CTTTGGCGGC TTTGAGGCAG
TAGCAGTTAG TCCAC
Go back to index
wmc(2c10)
Plate reference : 2c10
WMC locus number : WMC Length of sequence : 182
Last updated : Wed, Aug 27, 1997 at 4:20 pm
Owner : Wang, Utah Date at Agrogene : 30.8.96 Public Domain : Yes
Comments : Big microsatelite,(GA)8 78 to 93, (GT)12 130 to 153, too close to end to design primers. Bases 10-52 match part of 2F8.
PCR Comments :
Length of sequence : 182 Consensus sequence is :
..
AGCTCCCGCC CTAGAGCATG NGTGTGTGAG ATGGAGTCTT AGTGTGTGTG
TGTTTGTGTG TGTGTGTGGG TGTGTGTGAG AGAGAGAGAG AGATGGAGTC
TCAGTGTGTG TGTGTGTGAT GGAGTCTTAG TGTGTGTGTG TGTGTGTGTG
TGTTTGTGTG TGTGGGTGGG TGTGTAGTCC AC
Go back to index
wmc(2d10)
Plate reference : 2d10
WMC locus number : WMC Length of sequence : 245
Last updated : 15 Oct 1996 at 13:05
Owner : Wang, Utah Date at Agrogene : 21.8.96 Public Domain : Yes
Comments : (CA)24 Microsatellite(GT)23 22 to 67, too close to end for primers
PCR Comments :
Length of sequence : 245 Consensus sequence is :
..
AACCATGTCG ATCACTGGCT AGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG TGTGTGTCCG CTCAACAAAC CTCGGCCATT GATTCGAGCA
GCACACTTTC CATTCGTCAA GCTCGTAAAG GCACGTGATG TCTAGTCACC
TCGAATCGAA TCCGACTAAT GGTCAATCTG CAGCCGCGTA GCGTGGTGTG
AAAAGGTGGG GGAGTATCTA CTATGCTCTA TCTATGTTAG TCCAC
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wmc30(2e10)
Plate reference : 2e10
WMC locus number : WMC30 Length of sequence : 310
Last updated : Lun 9 Nov 1998 at 10:59
Owner : Wang, Utah Date at Agrogene : 21.8.96 Public Domain : Yes
Comments : (GA)18 Microsatellite(GA)9 69 to 86, (GA)8 89 to 104. Matches 6D5 and part of 4c1, 1g12, 6h7 (3' side of microsatellite). Bases 162 to 222 show homology to 10b5 bases 82 to 142 (complement) (61 in longest run, maxScore = 127). Duplicate with 10b5, 2e10 has priority.
PCR Comments : 51C anneal, smear;
Forward primer details :
TTAAAAgcTgTcAcgAgcgAAg at 16 length 22 bases, Tm 63
Reverse primer details :
TATgcAAgTTcAgTgTgcTATg at 199 length 22 bases, Tm 58
Expected size of amplified fragment (Chinese Spring=) 205 bases.
Length of sequence : 310 Consensus sequence is :
..
AACAGTGGAA CCTAATTAAA AGCTGTCACG AGCGAAGAAA TAATTCAACG
GGTCCCACTT GTGCGTGTGA GAGAGAGAGA GAGAGAGCGA GAGAGAGAGA
GAGATCCATC GGTCGATGCT CGTAAATACA TCTTTCAGCC ATATGCATTG
ATGATGCTGA GTAAAAACTT ATATAGTTGA CACAATCATA TAGAACATCA
TAGCACACTG AACTTGCATA CACAAATTTC ACGCAGGCGG CACAATCAGG
GTGGAAGAAT GGATCGCTAC GGGTAGGGCT ATGTTGAAAC CAACGAACTC
GTTAGTCCAC
Go back to index
wmc(2f10)
Plate reference : 2f10
WMC locus number : WMC Length of sequence : 197
Last updated : 15 Oct 1996 at 13:15
Owner : Wang, Utah Date at Agrogene : 23.8.96 Public Domain : Yes
Comments : Large (CT) (CA) compound microsatellite.(CA)8 44 to 59, (CT)8 11 to 26. Too close to end to design primers. Related to 2F8 (1G! family) but slightly different.
PCR Comments :
Length of sequence : 197 Consensus sequence is :
..
ACTAAGACTC CTCTCTCTCT CTCTCTCCTC TCTCTCTCTC ACTCACACAC
ACACACACAC CACACACACT AGACTCCATC TCACACACAT GCTCCAGGCG
GAGCATTTGT TCCTACCACC CTTCATCCAA CCTTACCCGT ATGATAAACA
ATCACCTTTA TTTACTTGCA TAACATGGAC AGTTTCCACT AGTCCAC
Go back to index
wmc31(2g10)
Plate reference : 2g10
WMC locus number : WMC31 Length of sequence : 289
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Wang, Utah Date at Agrogene : 23.8.96 Public Domain : Yes
Comments : CT CA compund microsatellite(GA)11 182 to 203, (GT)19 144 to 181. PCR product after PCR anneal 61C, polymorphic on agarose? Bases 150-279 (ie 3' side of microsatellite) homologous to part of 7c10.
PCR Comments : 61C anneal, product;
Forward primer details :
gTTcAcAcggTgATgAcTcccA at 122 length 22 bases, Tm 67
Reverse primer details :
cTgTTgcTTgcTcTgcAcccTT at 238 length 22 bases, Tm 68
Expected size of amplified fragment (Chinese Spring=) 138 bases.
Length of sequence : 289 Consensus sequence is :
..
AACAGCCGCA AATCCCTGCA TTCTGGGCCG TTGATTGGTC GAATCGGACA
GCTACTGTTC TCCATATGTG GTGGACCAAG TTCCAGAAAT TTCAAGCACA
GGCTGGCAGC CTCCTGACAC AGTTCACACG GTGATGACTC CCAGTGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGAGAGAGAG AGAGAGAGAG
AGAAGGGGAG GCACGATTAG ATTTAACGTG GACACACAAG GGTGCAGAGC
AAGCAACAGG ATAAGTTTGA TANAATANAG GTAGTCCAC
Go back to index
wmc(2h10)
Plate reference : 2h10
WMC locus number : WMC Length of sequence : 492
Last updated : Lun 28 D残 1998 at 14:24
Owner : Wang, Utah Date at Agrogene : 12.9.96 Public Domain : Yes
Comments : several CA microsatellites(GT)14 47 to 74. Sequence is composed of multiple sequence duplications, ministallite like, primers cannot be made around sequence. Related to 11B2, 11e3, 7a11.
Bases 449 to 477 show homology to 10a10 bases 177 to 205 (29 in longest run, maxScore = 36). Bases 76 to 98 show homology to 21b2 bases 239 to 261 (23 in longest run, maxScore = 34), true duplicate, 2h10 has priority. Bases 221 to 260 show homology to 24h7 bases 407 to 446 (40 in longest run, maxScore = 47), duplicate with 24h7, 2h10 has priority. Bases 365 to 385 show homology to 21g10 bases 91 to 111 (complement) (21 in longest run, maxScore = 90). Duplicate with 21g10, 2h10 has priority.
PCR Comments :
Length of sequence : 492 Consensus sequence is :
..
ACGTGGACTA ACCGAGTTGC AAGTTGCTAA TCGACTCGCA ACTAGGGTGT
GTGTGTGTGT GTGTGTGTGT GTGTTTTCGT GGCCCCTAGT TGCAAGTTGA
CCATCAACTC GCAACAAGGG AGAGGGGTGT GTGCGTGTGT CGAGGGTCCC
CAGTTGCAAG TTACCCATCG ACTCGCAACT ATGGTGTGTG TGTGTGTGCG
CGCGCGCGTG TGTGTGTGTT TGTGTGTTTT GTCGTGGGTC CCTAGCTGCA
TGTCAATAAC CGACTCGCAA CTAGTAGTGT GTGCGTGTGT GTGTCATTTT
GTCAAGGGGC CCCCAGTTGA ATCTCAACCA CCAACTTATA ACTAGGGGGG
TGTATGTGTT TGTTGAGGAC CCCTAGTTGC AAGTTGCCCA TCAACTCGCA
ACTTGGGGGG ATGTGTGTGT CTATATTTTA TTCGTGGCCC CCAGTTGCAA
GTTGACCATC GACTCGCAAC TAGGGGGAAG ATGTTAGTCC AC
Go back to index
wmc32(2a11)
Plate reference : 2a11
WMC locus number : WMC32 Length of sequence : 325
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Wang, Utah Date at Agrogene : 23.8.96 Public Domain : Yes
Comments : (CT)26 microsatellte(GA)26 121 to 172. Only chinese spring amplified, product ~ right size. Evidence for primer dimer.
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
cAgAgAcgAcAgTggAcAAggg at 96 length 22 bases, Tm 66
Reverse primer details :
gTccTgTgcTTTAcTTgAccgc at 182 length 22 bases, Tm 65
Expected size of amplified fragment (Chinese Spring=) 108 bases.
Length of sequence : 325 Consensus sequence is :
..
AACAATCTGC ACCGCTGCAT GCACCGCACC GCAGCTACCT AGCTAGATGG
ACGGGACGAA TCCAACGGAC ACTGGTTGCA ACCCTAGGAG GCACGCAGAG
ACGACAGTGG ACAAGGGCAT GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
GAGAGAGAGA GAGAGAGAGA GAGTTGTCTT GGCGGTCAAG TAAAGCACAG
GACGGGAACG CAGCAGCCAG CAACCCCCAC CGCCGGGCCC GGTCTCCCTC
GCAGTGCATC CCGCACCCCG CACCCGTGCC CCTGCCCTGC GCGAAATCAT
TCCTGATCGC TATTCGCTAG TCCAC
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wmc(2b11)
Plate reference : 2b11
WMC locus number : WMC Length of sequence : 277
Last updated : 30 Sep 1996 at 14:23
Owner : Wang, Utah Date at Agrogene : 12.9.96 Public Domain : Yes
Comments : difficult to sequence, CT rich microsatellite region. (GA)9 175 to 192, not enough room for primers
PCR Comments :
Length of sequence : 277 Consensus sequence is :
..
AGAAAGGGAG AGGGCCCAAC AAGAATTTTG TGCTGGATGC CAAGGGAAAG
GGAGAGGGAG AGGGAGAGAG AGAGAGAGGG AGAGGGAGAG AGAGGGAGAC
AGTTGGAGAG AANGGGAGAG GGCCCANCAC GANTTTTTTN TTGGATCCNT
ACCACAGAAT TGAAGATTTT CGCCGAGAGA GAGAGAGAGA GACAGAGAGA
GAGGGAGAGA TAGAGAGAGA GAGAGAGGGA GAGAGAGAGG GAGAGAGAGG
GAGAGGGAGA GAGAGAGGTT ATTCCAC
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wmc(2c11)
Plate reference : 2c11
WMC locus number : WMC Length of sequence : 280
Last updated : 30 Sep 1996 at 14:23
Owner : Wang, Utah Date at Agrogene : 23.8.96 Public Domain : Yes
Comments : (GT)12 7 to 30, too close to end for primers
PCR Comments :
Length of sequence : 280 Consensus sequence is :
..
AACCTTGTGT GTGTGTGTGT GTGTGTGTGT GAACCTTGTT GTTTTGCATT
GGCTTTATAT ATACAGTGGG GCAAAGCCTT TCCGTTACAC CCCCACCCCC
AGCTGTCGAT ACTACTTTTT TTTATTTTCG ATCGCATGTA GTTGTGGCTT
CTCCTTTGAT GCAAGCAGAT ATTTTATTTT AGGGACAAGC AAAATTAAGC
GATTTGTTTC TATTTGTAGA GTTAAGAGTT CTATTGCATG CCGTTTTGGA
TCTAAACATG GGGTGGGTCC ACTAGTCCAC
Go back to index
wmc(2d11)
Plate reference : 2d11
WMC locus number : WMC Length of sequence : 521
Last updated : Mar 22 D残 1998 at 9:41
Owner : Wang, Utah Date at Agrogene : 12.9.96 Public Domain : Yes
Comments : multiple GT and GA microsatellites(GA)9 210 to 227, (GT)8 57 to 72, (GT)8 194 to 209, (GT)8 257 to 272. Member of Member of 1G1, 2F8 2D11, 2H11, 2A12, 6G1, 6H3, 6H4, 6B11, 7e3, 7h5, 7b6, 8a11, 5h10, 5d12, 11d4, 9H3 etc. Not enough room for primers Bases 302 to 334 show homology to 19g1 bases 1 to 33 (complement) (33 in longest run, maxScore = 45). Bases 275 to 341 show homology to 23d6 bases 166 to 232 (67 in longest run, maxScore = 55), duplicate with 23d6, 2d11 has priority. Bases 13 to 57 show homology to 24b4 bases 14 to 58 (45 in longest run, maxScore = 48). Bases 291 to 313 show homology to 25h5 bases 36 to 58 (complement) (23 in longest run, maxScore = 50).
PCR Comments :
Length of sequence : 521 Consensus sequence is :
..
AACAAATGCT CTGCCTAGAG CATGTGTGTG TGAGATGGAG TCTTAGTGTG
TGTGTGGTGT GTGTGTGTGT GTACGTGAGA GAGAGAGAGT GAGGGAGAGA
GGAGAGAGAG AGATGGAGTC TTAGTTTGTG TGTGTGTGTG AGAGAGAGTG
ATGGAGTCTA AGTGTGTGTG GGGGGGTGCT TGTGTGTGTG TTTGTGTGTG
TGTGTGTGTG AGAGAGAGAG AGAGAGATGG AGTTCTTAGT GTGTGTGGGG
GGGTGCGTGT GTGTGTGTGT GTCCCGGGGT CCTCTGTGGC GGATGTAATT
TAAGTGTGCA TGGCTTCATC ATAGAGAGGT GATGTGTATG GAAGAGGCCA
CCAACGATGG GGTGCGAGAG AGAAAATGCC TGTAGGAGGG ACGAGAAGGT
GCGTGTGTGT GAGAGGAGTC GACATCGAGA GAACGTGTTT GTTCGAGAGA
CACCACAGAA GACTACTATA TATCGATGGT GCATGTAGGC GGGAATTAAA
CAAAGGGATG GTCTAGTCCA C
Go back to index
wmc33(2e11)
Plate reference : 2e11
WMC locus number : WMC33 Length of sequence : 761
Last updated : Tue, Aug 19, 1997 at 5:49 pm
Owner : Wang, Utah Date at Agrogene : 12.9.96 Public Domain : Yes
Comments : several large microsatellites(GA)16 194 to 225, (GA)9 346 to 363, (GT)9 176 to 193, (GT)8 318 to 333, (GT)16 399 to 430, (GT)8 433 to 448. Bright smeary band around 140 bases (wrong size) after PCR with anneal at 61C - redesign primers?. First 77 bases 76/77 identical to 2f8 (1g1 family), homology extends beyond this point up to microsatellite (though different core motifs), extensive match to 6a11, bases 470-753 (ie all 3' side microsatellite) match 8g11. Best not use.
PCR Comments : 61C anneal, smear;
Forward primer details :
TggATgAAgggTggTAggAAcA at 94 length 22 bases, Tm 65
Reverse primer details :
TAAATTAcATccgccAccgAAg at 472 length 22 bases, Tm 65
Expected size of amplified fragment (Chinese Spring=) 400 bases.
Length of sequence : 761 Consensus sequence is :
..
AACAGATGAT AAGTTTGCTG ACTACTAAAG TAAAGTGGAA TTTGTCCATG
TTATGCAAGT AAATAAAGGT GATTGTTATC ATACGGGTAA GGTTGGATGA
AGGGTGGTAG GAACAAATGC TCCNCCNANA NCATGTGTGT GCGANATGGA
NTCNTANTGT GTGTGTGGGG TCNNTGTGTG TGTGTGTGTG TGTGAGAGAG
AGAGAGAGAG AGAGAGAGAG AGAGAGGAGA GAGAGAGATG GAGTCATAGT
TTGTGTGTGT GTGTGAGAGA AAAAAANATG GAGTCTTAAT GTGTGTGGGG
GGGGGGTGTG CTTGCNTGTG TGTGTGTGTG TGTTTGTGTG TGTGTGAGAG
AGAGAGAGAG AGATGGATTC TTAGTGTGTG TGGGGGGTGC GTGCGTGCGT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TTGTGTGTGT GTGTGTGTGG
GTGTGTGTGT GTCGCGGGGT CCTTCGGTGG CGGATGTAAT TTAAGTGTGC
ATGGCTTCAT CATTTGGGGC GGAAAACGAA TCGACATCTC GATGTGATAC
AGCCCTTTCC ATTTTCGTTG GGAAAGAACG GCGAAGTCCG TCCGAACCCT
CCAATGAAGA AATAAGAGGA GAGCAAAGCG CCAATGGCGC GCGAAGCGCA
TGCGGAAGGG GCACGGAGAA ATAAAGAAGT GTGGGGGAGA AGCAGCCGAG
CTCATTCCCT TCGCTTCCTG GGCCCAAAGC AGTGCTTTGT TTCCTGGCCA
AATTAGTCCA C
Go back to index
wmc34(2f11)
Plate reference : 2f11
WMC locus number : WMC34 Length of sequence : 375
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Wang, Utah Date at Agrogene : 30.8.96 Public Domain : Yes
Comments : (TG)4 (CA)13 compound repeat, plus (CA)10 repeat(CA)10 119 to 138.
PCR Comments : tested 51C anneal, no product;
Forward primer details :
AggTgcTTATcAAggcAcATcA at 9 length 22 bases, Tm 64
Reverse primer details :
cAcAAccAggAgTTgTcTcTAc at 316 length 22 bases, Tm 58
Expected size of amplified fragment (Chinese Spring=) 329 bases.
Length of sequence : 375 Consensus sequence is :
..
ACTGCCATAG GTGCTTATCA AGGCACATCA TGCCTTGGGC ATGTGTGTGA
CACACACACA AGCACACACA CACACCACAA GATCACATAC AACTTCCACA
AAGTATGTGG GGGGAACCCA CACACACACA CACACACACT CTTGCACACA
CTAGTGCATG AGCTCAACAC CAAGCACATG AGTAACAGAC ATGCATCACT
CTAGTTCAAA ACACATACTT ATTAACACAC ACACATACAT CTACATGAGC
TAGCTCTCAC AAACACTAGC TCACAAATAC CTACACATGC AATTCTACAC
AGGCTAGCAA AATAAGTAGA GACAACTCCT GGTTGTGAGG CAAAATAATA
CCACACTACT GTTCAGTTAG TCCAC
Go back to index
wmc35(2g11)
Plate reference : 2g11
WMC locus number : WMC35 Length of sequence : 283
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Wang, Utah Date at Agrogene : 30.8.96 Public Domain : Yes
Comments : (GT)25 113 to 162, internal repeated structure, before and after microsatellite, of around 50 bases. (>2 loci). Bases 148-235 (ie 3' side of microsatellites) match 5b8 (part).
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide.
Forward primer details :
gcAgAgAggcAcAAcTAgcgAg at 4 length 22 bases, Tm 66.0
Reverse primer details :
AAccTTAAgggTcTgccggAAc at 247 length 22 bases, Tm 66.0
Expected size of amplified fragment (Chinese Spring=) 265 bases.
Length of sequence : 283 Consensus sequence is :
..
AACGCAGAGA GGCACAACTA GCGAGTGTGT GTGTATGTGT GTGTGTTTGA
AACAGGAGTA GATAGATTAC TATCAAGATT GAGGTGCCAC CATACTCCTT
CGGTGTCGAG TTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGTGTGT GTTTGAGGGA GAAGCCAGTC GATAGATTAG TATCAAGATT
GAGGTGTCAC CCTACTCCTT CGGTGTTGGG AAGTGTCGTA TTTCAGGTTC
CGGCAGACCC TTAAGGTTTG AACTCTAGTC CAC
Go back to index
wmc(2h11)
Plate reference : 2h11
WMC locus number : WMC Length of sequence : 326
Last updated : Lun 8 F思 1999 at 10:07
Owner : Wang, Utah Date at Agrogene : 30.8.96 Public Domain : Yes
Comments : Multiple CA and GT repeats -(GA)10 183 to 202, (GA)9 240 to 257, (GT)11 298 to 319.Member of 1G1, 2F8 2D11, 2H11, 2A12, 6G1, 6H3, 6H4, 6B11, 7e3, 7h5, 7b6, 8a11, 5h10, 5d12, 11d4, 9H3 . too close to end for primers. Bases 95 to 141 show homology to 12e11 bases 143 to 189 (complement) (47 in longest run, maxScore = 127). Bases 43 to 134 show homology to 10a4 bases 78 to 169 (complement) (92 in longest run, maxScore = 125), true duplicate, 2h11 has priority. Bases 85 to 168 show homology to 25b5 bases 152 to 235 (84 in longest run, maxScore = 59). Bases 69 to 123 show homology to 25d5.2 bases 136 to 190 (55 in longest run, maxScore = 142). Duplicate with 25d5.2, 2h11 has priority. Bases 185 to 240 show homology to 22g5 bases 72 to 127 (56 in longest run, maxScore = 55).
PCR Comments :
Length of sequence : 326 Consensus sequence is :
..
AACAGATGAT AAGTTTGCTG ACTACTAAAG TAAAGTGGAA TTTGTCCATG
TTATGCAAGT AAATAAAGGT GATTGTTTAT CATACGGGTA AGGTTGGATG
AAGGGTGGTA GGAACAAATG CTCCGCCTAG AGCATGTGTG TGTGAGATGG
AGTCTTAGTG TGTGTGTGGG GTGTGTGTGT GTGAGAGAGA GAGAGAGAGA
GAGGAGAGAG AGAGATGGAG TCTTAGTTTG TGTGTGTGTG AGAGAGAGAG
AGAGAGATGG AGTCTCAGTG TGTGTGTGGG GGTGTGTGCG TGCGTGCGTG
TGTGTGTGTG TGTGTGTGTA GTCCAC
Go back to index
wmc36(2a12)
Plate reference : 2a12
WMC locus number : WMC36 Length of sequence : 591
Last updated : Lun 28 D残 1998 at 16:37
Owner : Wang, Utah Date at Agrogene : 12.9.96 Public Domain : Yes
Comments : Several microsatellites, one (CA)36(GT)36 383 to 454. Multiple inserts (2) in this fragment (joined by linker 300-313). First insert is member of 1G1, 2F8 2D11, 2H11, 2A12, 6G1, 6H3, 6H4, 6B11, 7e3, 7h5, 7b6, 8a11, 5h10, 5d12, 11d4, 9H3. Primer designed against second insert 19.6.97. Bases 33 to 87 show homology to 25a1 bases 62 to 116 (complement) (55 in longest run, maxScore = 28). Duplicate with 25a1, 2a12 has priority.
PCR Comments :
Forward primer details :
TTcTcTTTTccTTTcgcAcTcc at 335 length 22 bases, Tm 64
Reverse primer details :
cATcAgTTgTggggTTTcTTcA at 474 length 22 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 161 bases.
Length of sequence : 591 Consensus sequence is :
..
ACACACACAC GCATGCACAC CCCCCCACAC AGACACACTA AGACTCCATC
TCTCTCTCTC TCACACACAC ACAAACTAAG ACTCCATCTC TCTCTCTCTC
ACACACACAC ACACGCACAC ACACACCACA CACACACACA CTAAGACTCC
ATCTCACACA CACATGCTCT AGGCGGAGAA TTTGTTCCTA CCACCCTTCA
TCCAGCCTTA GCCGTATGAT AAACAATCAC CTTTATTTAC TTGCATAACA
TGGACAAATT CCACTTTACT TTAGTAGTCA ACAAACTTAT CATCTGTTAG
TCCACGCGTG GACTAACATA CAAGTTCAAG TGCTTTCTCT TTTCCTTTCG
CACTCCTCGA AGATGATCCT GCATTGGCCA TTGTGTGTGT GTGTGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTAAGATT TGCTTGGCTG TAGTGAAGAA ACCCCACAAC TGATGCTATT
TATAGAGGAT AGTTGGACGC AAGTAGCGGA ACTAAAGTAA ATTGAATACA
ATAGCTACAT TCACACAAAT GATATATTGG TCTTAGTCCA C
Go back to index
wmc37(2b12)
Plate reference : 2b12
WMC locus number : WMC37 Length of sequence : 345
Last updated : Wed, Aug 27, 1997 at 4:24 pm
Owner : Wang, Utah Date at Agrogene : 12.9.96 Public Domain : Yes
Comments : (GT)16 101 to 132, complex microsatellite. Fragment too large at 51C. Redesign primers? (Near) duplicate of 2D7.
PCR Comments : tested 61C anneal, no product; 51C anneal, product;
Forward primer details :
cgcTTTgTgTgggcTgAAgAgg at 4 length 22 bases, Tm 70
Reverse primer details :
gTggAcTAcAcATgAAcgggAA at 324 length 22 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 342 bases.
Length of sequence : 345 Consensus sequence is :
..
AACCGCTTTG TGTGGGCTGA AGAGGGGAGG TGTGTATATA TGTGCATATA
TAATGAATGG TGTATGTGAG TGTGTGTGGG GGGAGAGGGG TGCTATTGAT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGCATGTGT GAGTGAGTGT
GTGATGTGTG TGTATAGATA TGTGAGTGTG TGTGTGTGTG GGGGGTGTGA
GTGAGTGTTA TTGATGTTTG TGTGTTTGAC ATATGATTGA CACAACTTCA
TTCTTTCACG CAGGACATGC ATCTATTTTG ACAAGAGAGA GTGAATTCCG
TTGCACGCTT CAAGGGTAAT CTCTTCCCGT TCATGTGTAG TCCAC
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wmc(2c12)
Plate reference : 2c12
WMC locus number : WMC Length of sequence : 281
Last updated : 30 Sep 1996 at 14:31
Owner : Wang, Utah Date at Agrogene : 30.8.96 Public Domain : Yes
Comments : Large (CA) (TA) compound, too close to end to design primers(GT)9 6 to 23,
PCR Comments :
Length of sequence : 281 Consensus sequence is :
..
AACATGTGTG TGTGTGTGTG TGTCTGTGTG TATGTGTGTG TAGTGTGTGT
GTGTGTATGT GTGTGTGTGT AGTGTGACCC GATCGAAGAT GGTTGCTGCA
TCCGACTCAC CTGATGTTTA TAAATTTGGC CAAAAAAATG CGGGAAATGG
TCAGGACATG AACACACTTG CATGTGGACG AAATATATGT ATGAAAAGGG
TAGTGGTATG TCCAAATACC CAATGAACAA CTTTGATGTG GCACCTATCG
CACAAAGCGC ACGTTATTAT TGCTAGTCCA C
Go back to index
wmc(2d12)
Plate reference : 2d12
WMC locus number : WMC Length of sequence : 299
Last updated : 15 Oct 1996 at 16:04
Owner : Wang, Utah Date at Agrogene : 30.8.96 Public Domain : Yes
Comments : (CA)12 microsatellite, many small microsatellites (GT)11 175 to 196, too close to end for primers
PCR Comments :
Length of sequence : 299 Consensus sequence is :
..
AGCCCCGTTG GTGAGCCCCT ACTCAATCTC GTTTTTTTTG AAACAAAAGG
GGTTTCCCCC CTCTCCATTT TAACAAAAGG TGTATATGCA TAGCGATTAA
TGTGTGTGAG TGTGTGCTTT GTATGTGTGT GTGAGTGGGT GATGTTGGTG
TGTGTGGGTG GAAGTGTTGT TGATGTGTGT GTGTGTGTGT GTGTGTGAAT
GAGTGATGTT GGTGTGTGTG TGTGGGGTGG TGCTGTTCAA GTGTGTGTGA
TGTGTGTGTG TGTGCGTGTG AGTGAGTGCT ATTGATGTGT GTAGTCCAC
Go back to index
wmc(2e12)
Plate reference : 2e12
WMC locus number : WMC Length of sequence : 218
Last updated : 15 Oct 1996 at 16:06
Owner : Wang, Utah Date at Agrogene : 30.8.96 Public Domain : Yes
Comments : Large CA repeat. (CA)12 114 to 137, (CA)8 140 to 155, (CA)9 158 to 175, (CA)16 178 to 209, Too close to end for primers
PCR Comments :
Length of sequence : 218 Consensus sequence is :
..
AACCACAATT AACCCGTAGG ACAAAAGAAA TCTACTCAAA CACCATAGGA
TGGCAGCACA TCATTGGATA ATAATATGTG GCATAAAGCA CCATGTTTAA
GTAGAGATTA CAACACACAC ACACACACAC ACACACAAAC ACACACACAC
ACACAAACAC ACACACACAC ACACAAACAC ACACACACAC ACACACACAC
ACACACACAT TAGTCCAC
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wmc(2f12)
Plate reference : 2f12
WMC locus number : WMC Length of sequence : 158
Last updated : Mar 22 D残 1998 at 9:42
Owner : Wang, Utah Date at Agrogene : 12.9.96 Public Domain : Yes
Comments : No substantial microsatellite. Bases 141 to 158 show homology to 25g11 bases 253 to 270 (complement) (18 in longest run, maxScore = 19).
PCR Comments :
Length of sequence : 158 Consensus sequence is :
..
AACTCCCTTT GTAAACAAAT ATAAGAGCAT TTAGATCACC ACTTTAATGA
TCTAAGCGCT CTTATATTTC CATACAGCGG GAGTAGTTGT CTTACTAGTA
AAGTGGTTGA CCATATACTT ATATATAAAT GTACGAACTC ATGCCCATGA
CCGAGGAC
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wmc(2g12)
Plate reference : 2g12
WMC locus number : WMC Length of sequence : 394
Last updated : Lun 8 F思 1999 at 10:07
Owner : Wang, Utah Date at Agrogene : 12.9.96 Public Domain : Yes
Comments : Several small microsats , one (CG)5(TG)7 No substantial microsatellite, motifs to close to end for primers Bases 314 to 338 show homology to 22A1 bases 134 to 158 (25 in longest run, maxScore = 41).
PCR Comments :
Length of sequence : 394 Consensus sequence is :
..
AACCATTATA ATCACACATG AACCTTTGTT TGGCATTGCT CAAACCTTGC
ACAATTGTAT GCATGCACTC TTTCTATTGG ACCGAACACC TTTTATTGCA
TGAACGTTAT GGCCCTCGAG CACCACCGTA GTCGAGTGGT TCCCCGACGG
CCCTCCACCA CTCCCGACAA TCCATATATC CCAAACATTT GTCCCTCTCT
CTCACTCTCT CTCTGCGCGT GCACGCGCGC GCGTGTGTGT GTGTGTGCTG
CCTGCGTGTG TGTGCGCGTG CATGTGTGTT GCTGCGTGTG CATGTGTGTG
TGTGTGTGCA CGCGCGCGTG CGTGTTGTTG CGTGTGTGCG CGCATGCGTG
TGTGTTGGTG CATGTGTATG TGTTGCTGCA TGTGTGTAGT CCAC
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wmc(2h12)
Plate reference : 2h12
WMC locus number : WMC Length of sequence : 220
Last updated : Tue, Aug 26, 1997 at 5:17 pm
Owner : Wang, Utah Date at Agrogene : 30.8.96 Public Domain : Yes
Comments : (CA)7 and (CA)9 microsatellites(CA)9 77 to 94. Microsatellites too small. Too difficult to design primers. Bases 95-185 (ie 3' side of microsatellite) match part of 1d9. Bases 41-89 (ie 5' and 3' side of microsatellites) and 148-212 match part of 3b11. Bases 77-174 match (weakly) part of 3c6.
PCR Comments :
Length of sequence : 220 Consensus sequence is :
..
AACCCGCGTC ATTTCCTCAA GCACCCCGCC CCCCTCCATA CACACACACA
CACCAAAACC TCCTCGAGCA TGCACGCACA CACACACACA CACACTCTCC
CTCGCTCGAA ACTCTAGGAA GGTCCCCGCC GCCGCCACCG CCACAAGGCC
TCCATTGTCA ACATCTGCCG GTTTGCCCGT GCAGCTTACC CACCGATCTC
CATACCTAGG CCTAGTCCAC
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wmc38(6A1)
Plate reference : 6A1
WMC locus number : WMC38 Length of sequence : 779
Last updated : Lun 4 Jan 1999 at 12:03
Owner : Dubcovsky, Buenos Aires Date at Agrogene : 9.9.96 Public Domain : Yes
Comments : AGR49. No overlap between forward and reverse sequences. Multiple inserts (2) joined 263-278 by linkers. (CA)25 212 to 261, (CT)13 441 to 466. Primers designed to second insert - expected fragement size does not take into account no overlap between forward and reverse. PCR products obtained of circa 1000 bases after PCR at 61C anneal. Bases670-750 have some homology to 13g1.1. Bases 104 to 121 show homology to 21c5 bases 95 to 112 (18 in longest run, maxScore = 44). Bases 152 to 199 show homology to 25f10 bases 70 to 117 (complement) (48 in longest run, maxScore = 107). Bases 611 to 637 show homology to 24a9 bases 142 to 168 (27 in longest run, maxScore = 68).
PCR Comments : 61C anneal, product;
Forward primer details :
gTAgAcgAAgTcgcggAgccTg at 284 length 22 bases, Tm 69
Reverse primer details :
gcgTgAgAgAgTTAcgggcAAA at 612 length 22 bases, Tm 67
Expected size of amplified fragment (Chinese Spring=) >350 bases.
Length of sequence : 779 Consensus sequence is :
..
GTACCAGGGG CTACATAGTA GCCCCAACGT TAGAATCCCG CGGCTAAGCG
AAAGTGTTAC AGCTATATAG TCCGGTTACC TAGTTCGACG TGCGATCACC
TTCTTAATGG ACCAAGACGT TTGATAAAGA GTGAGTAAGC ACATTTTTTC
ACGAACACCC CCGCATTGTA TGCGTGGGGG CTGAAGCCAA CGACTGCTAA
CTTTCGGATT ACACACACAC ACACACACAC ACACACACAC ACACACACAC
ACACACACAC ATTAGTCCAC GCGTGGACTA CCTGTAGACG AAGTCGCGGA
GCCTGGGGTG GTTGGGCCCG ATGAAGCGGC GCTGGCCGCG GAGCGCGAAG
CGGTAGGTGC GGCGGAGGCC GAGGAAGTAG GCGGTGATGG CGGTGATCTC
CCACAGCACC ATCTCTCTGC GGCGGCAGCG GA
(break)
TCTCTCTCTC TCTCTCTCTC TCTCTCTCCG GGGGGGGGTG TGGGGGGGGG
TCTTTCTAGT TCGCATGCAT ATATACACCA TCTATAGGTC TCTCTCGCAC
ACTATGTATC ATACTCTAGC TAGTCCAAGC TAGATATCTT GGGTGCACTC
ATCATACGCA CACAAATTCC TTGGCTCTTT GCCCGTAACT CTCTCACGCA
CCACTATGTC ATCTCGGAGC TCTCCCCCCC CTTCTCAAAC TCTCCATCCA
CCTGGGTCAC ACATACACAT GCATATCTCA CTCGCACACG ATAGGCCCAT
CTAAACCTCT AACTCTCTCC CTCGTTCTCT GTCCATCTCA CACGTAC
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wmc39(6b1)
Plate reference : 6b1
WMC locus number : WMC39 Length of sequence : 510
Last updated : Lun 5 juil 1999 at 17:22
Owner : Dubcovsky, Buenos Aires Date at Agrogene : 9.9.96 Public Domain : Yes
Comments : AGR50 (CA)10 311 to 330, (CT)10 291 to 310, trimmed to Rsa at 3' end. Bases 439-506 match bases 16-82 of 6B12 Bases 191 to 213 show homology to 10c5 bases 157 to 179 (23 in longest run, maxScore = 98).
PCR Comments : 61C anneal, product;
Forward primer details :
TccTTTccgTcTccATcccAgT at 155 length 22 bases, Tm 68
Reverse primer details :
gAgTgTgcgggcgTATAAAccT at 397 length 22 bases, Tm 66
Expected size of amplified fragment (Chinese Spring=) 264 bases.
Length of sequence : 510 Consensus sequence is :
..
CTAAGCTTTC CTTTTCACGC AACACACACA GTCTCACTCG TCTTTCACTT
TGTCTTTCTC TCTATGGGGT TATCTCTCGC ACCCTATATG TCTCTAGATA
TGACTCATAC CACTAAAATT ACTCTCTCTT GCAGACACAA CATTTGTTGC
GGTCTCCTTT CCGTCTCCAT CCCAGTTATA GAACTGACAC TATTCATTTG
TTTACCGATC AGACAAACTC CCCCCCCCCT TCTCTCTCTC TCTCTCACAC
ACACACAACT CCTGCTTCCA CTCCCCTTCC CGACTACCGT CTCTCTCTCT
CTCTCTCTCT CACACACACA CACACACACA AAACCCTTGC TTTCGCACCC
CCGACCCGTA TTTCTCTCAC AAACATTTAT CGACTAGCCG ATAGATAGGT
TTATACGCCC GCACACTCGT GCTTCCACTA TCGCATACTT GTCTCTCTCG
CGCTCCTTGT ATCTATGTAG ATTTTTCTTC CCCTCTTGAG ACACGCCCTC
TCGATCGTAC
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wmc40(6c1.1)
Plate reference : 6c1.1
WMC locus number : WMC40 Length of sequence : 648
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Dubcovsky, Buenos Aires Date at Agrogene : 9.9.96 Public Domain : Yes
Comments : AGR51. Multiple inserts (2) joined 260-277. Trimmed to insert at 3' end. (GA)25 138 to 187, (GCC)7 552 to 572. Primers shown here are for first insert. Bases 79 to 102 show homology to 12e5 bases 161 to 184 (complement) (24 in longest run, maxScore = 53).
PCR Comments : 61C anneal, product;
Forward primer details :
TTcccTccAAAATggccAAcTg at 11 length 22 bases, Tm 69
Reverse primer details :
TcTTggcTggTgcgATgAAcTg at 208 length 22 bases, Tm 70
Expected size of amplified fragment (Chinese Spring=) 219 bases.
Length of sequence : 648 Consensus sequence is :
..
TAACTAGATG TTCCCTCCAA AATGGCCAAC TGTTGGCACC CTTCCCGCTC
AATATTTGGG GAGAGGCCCA GGGCCTCCGC CTATAAATAG GACTAGCCAC
CCACAAGGTT GAAGCATCGA GAGAACAGGG ATAGAAAGAG AGAGAGAGAG
AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAAGC GACTGAACTC
CCCCTGGCAG TTCATCGCAC CAGCCAAGAA CAGACCCTCG CGAGGCTGTT
CTCCCTTGTT AGTCCACGCG TGGACTACTC AGCTAACTTT AGGGGATCGG
CGGTGCGGCG AAATTTTAAA GGGATTGGTT AGAGTTGCCC TAACAAACTG
AACTATTGTA TCAGAGAGAT AATTTACATC GGTAGAGAAG AGGAAGGAGG
CGGTTAGACG TGGAAGTCAG AACTTATCCT TCCATCTATC TCGCTAATAG
TTCCCCTTAT CTCTTGTGTT GTTTGACTCC TCATCCCTCT TCCAAGCGCG
GATAGGTCTC TGTTTCCTCG GCAGCCAACC AGCCATGGCT TCCCACCCGT
CGCCGCCGCC GCCGCCGCCG CCGGAACACC CCATACCACC CGCTCCCACC
ACCATAAGTG ACCTCGACGA CGACCTGCTC CGGGAGATCT TCCTCCGC
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wmc41(6c1.2)
Plate reference : 6c1.2
WMC locus number : WMC41 Length of sequence : 648
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Dubcovsky, Buenos Aires Date at Agrogene : 9.9.96 Public Domain : Yes
PIC Value : 0.37+0.55
Comments : AGR51. Multiple inserts (2) joined 260-277. Trimmed to insert at 3' end. (GA)25 138 to 187, (GCC)7 552 to 572. Primers shown here are for second insert. Products obtained after PCR at 61C anneal, (>2 loci) - polymorphic on agarose.
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
TcccTcTTccAAgcgcggATAg at 484 length 22 bases, Tm 70
Reverse primer details :
ggAggAAgATcTcccggAgcAg at 625 length 22 bases, Tm 69
Expected size of amplified fragment (Chinese Spring=) 163 bases.
Length of sequence : 648 Consensus sequence is :
..
TAACTAGATG TTCCCTCCAA AATGGCCAAC TGTTGGCACC CTTCCCGCTC
AATATTTGGG GAGAGGCCCA GGGCCTCCGC CTATAAATAG GACTAGCCAC
CCACAAGGTT GAAGCATCGA GAGAACAGGG ATAGAAAGAG AGAGAGAGAG
AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAAGC GACTGAACTC
CCCCTGGCAG TTCATCGCAC CAGCCAAGAA CAGACCCTCG CGAGGCTGTT
CTCCCTTGTT AGTCCACGCG TGGACTACTC AGCTAACTTT AGGGGATCGG
CGGTGCGGCG AAATTTTAAA GGGATTGGTT AGAGTTGCCC TAACAAACTG
AACTATTGTA TCAGAGAGAT AATTTACATC GGTAGAGAAG AGGAAGGAGG
CGGTTAGACG TGGAAGTCAG AACTTATCCT TCCATCTATC TCGCTAATAG
TTCCCCTTAT CTCTTGTGTT GTTTGACTCC TCATCCCTCT TCCAAGCGCG
GATAGGTCTC TGTTTCCTCG GCAGCCAACC AGCCATGGCT TCCCACCCGT
CGCCGCCGCC GCCGCCGCCG CCGGAACACC CCATACCACC CGCTCCCACC
ACCATAAGTG ACCTCGACGA CGACCTGCTC CGGGAGATCT TCCTCCGC
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