Wheat microsatellite WMC 25/06/01
wmc(12f9)
Plate reference : 12f9
WMC locus number : WMC Length of sequence : 208
Last updated : Tue, Mar 3, 1998 at 12:55 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. Bases 37 to 208 show homology to 12e8 bases 42 to 213 (172 in longest run, maxScore = 154). No substantial microsatellite.
PCR Comments :
Length of sequence : 208 Consensus sequence is :
..
TCGGTCGCCG ACGACTTATC CGCAGCCGCC GCGGAACGCC TTGCCACGCC
TATAAAAGGA GGCCCCGAGC TTCCCCGAGC ACGCAGGCAA CCTCAGGCCA
CCCCAATGGC ACTCCCCTAG CTCGCATTCG ACCCGGGGAT GCCTCCTTCC
TCATCTCCGG CAACTCCTGC CGCCGCCACC GCCCCGACCA ATCTGGCACC
TCCAGTAC
Go back to index
wmc(12g9)
Plate reference : 12g9
WMC locus number : WMC Length of sequence : 253
Last updated : Tue, Mar 3, 1998 at 12:55 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 253 Consensus sequence is :
..
GTACCCACCG CCTCCGGTGA CGCACGCCGT CTTCCTGCTC ACGTTCCCTT
CCGCCGGCGC CATATCGTCC CTGTCACTAG CTACTCACTA CTTCAGTTCT
CCTGGCAACT CAAGCCACCA GAGTAAATTC TGCTGATCTG GTGGGTGGAG
CACGCCGCTC CGAGATAACT GTATTTATGC TCGCACCTGC ACGTGCATCA
CGCGCGTTCA ACGCCAGCCA CGCAAATCGA TCGATATGTG TAGTTAGTCC
ACG
Go back to index
wmc(12h9)
Plate reference : 12h9
WMC locus number : WMC Length of sequence : 135
Last updated : Lun 5 juil 1999 at 17:22
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. NB 5' linker corrupted. Bases 74 to 102 (complement) show homology to 2e9 bases 33 to 61 (29 in longest run, maxScore = 68), duplicate, 2e9 has precedence. No substantial microsatellite. Bases 1 to 51 show homology to 2d2 bases 3 to 53 (51 in longest run, maxScore = 72). True duplicate with 2d2, 12h9 has priority. Bases 62 to 127 show homology to 26e7 bases 94 to 159 (66 in longest run, maxScore = 72).
PCR Comments :
Length of sequence : 135 Consensus sequence is :
..
AACACACACA GACACGCACA AACACCCATT TATCTGGATC CTCATCTCTC
CCCATGTCCG CATGTGTATC TCACACACTC ACTCTCTAAT TATGTATATG
TGTCTCCACG TTACACAACA CAAAGCCACA TGTAC
Go back to index
wmc370(12a10)
Plate reference : 12a10
WMC locus number : WMC370 Length of sequence : 556
Last updated : Wed, Aug 26, 1998 at 5:00 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. Bases 234 to 256 (complement) show homology to 5e12 bases 669 to 691 (23 in longest run, maxScore = 45). (CA)8 397 to 412, (CA)13 466 to 491, plus GCA and interspersed CA repeats. Reverse primer is shoehorned into this region.
PCR Comments : 61C anneal, smear.
Forward primer details :
cTcTTTTgccccTcAAgTgg at 242 length 20 bases, Tm 64
Reverse primer details :
gTgTgcTgTTgcgTgccTAT at 521 length 20 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 299 bases.
Length of sequence : 556 Consensus sequence is :
..
GTTTTTCCTC AAAAATTTTC CAAAGGGTTT TGGAGGAGTT TCCAGTTTGC
AATATACAAA CAACGAACTG GTCAAGGGGG AGTGTTGAGA AATAAGAGAA
TTCCTTATTT GACACTATCT TAAAATTTGC TTCCTTATTT GACACTGGAA
AAAAAATTCT TCCCTATTTG ACACAAGTTC TAAATTTTAT TCCCTATATG
ACATTTTCGT TCATTTTGAG CCTAAATGAC ACATGAAAAG ACTCTTTTGC
CCCTCAAGTG GTATGTGTGT GGGGGCAATA GCGCGCACAC ACAACACCAG
TGCGAGAGCA GAAGCACACG CGCAGCAACA CATGCACATG CACCAACACA
CACACACGCG CGCACACACA CACGCAACAA CACGCACGCG CACGTGCACA
CACACACACA CACGCAGCAA CACACATGCA CGCGCGCACA CACGCAGCAA
CACACACGCA CGCAGCACAC ACACACACAC ACACACACAC ACGCAGCAGC
AGCACACACA CAGGCAGCAC ATAGGCACGC AACAGCACAC ACACACGCGC
ACGTAC
Go back to index
wmc371(12b10)
Plate reference : 12b10
WMC locus number : WMC371 Length of sequence : 241
Last updated : Wed, Aug 26, 1998 at 5:11 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. Bases 79 to 96 show homology to 11b5 bases 170 to 187 (18 in longest run, maxScore = 27). Small microsatellite (GGT)6 131 to 148, several other small GGT and GGC repeats.
PCR Comments : 61C anneal, product.
Forward primer details :
ggAAAccAAggcAgcAgTcA at 51 length 20 bases, Tm 65
Reverse primer details :
ccAgggcTAcTTcAgccAgg at 219 length 20 bases, Tm 66
Expected size of amplified fragment (Chinese Spring=) 188 bases.
Length of sequence : 241 Consensus sequence is :
..
CTCATAATAC ATGTCAAGAG AAGGCCTGAA TTAACATTAC CATCCTTTGA
GGAAACCAAG GCAGCAGTCA TCATCGTTGT GGTGGTGGTG GTGGTGGTGA
CCATGGTGAT GGTGGTGGTC CTCGGCGTGG TGGTCATGGT GGTGGTGGCC
GTGGTGGTGA TGGCCACCAT GCGGCGGCGG CGGCGGGTAG TATTATGGCG
GCGGCTGCTG CGGCTGGCCC TGGCTGAAGT AGCCCTGGTA C
Go back to index
wmc372(12c10.1)
Plate reference : 12c10.1
WMC locus number : WMC372 Length of sequence : 183
Last updated : Mar 25 Aož 1998 at 14:27
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. Multiple inserts in this clone, this is the first insert. Bases 43 to 62 show homology to 1f7 bases 49 to 68 (20 in longest run, maxScore = 32). (CA)8 109 to 124, (CT)10 89 to 108.
PCR Comments : 61C anneal, product;
Forward primer details :
gATcAgATAAccccgAcTAccg at 63 length 22 bases, Tm 63
Reverse primer details :
gTAgTcAggAAggggAgTggAA at 149 length 22 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 108 bases.
Length of sequence : 183 Consensus sequence is :
..
CAACATTTGT TGCGGTCTCC TTTTCGTCTC CATCCCAGAC TGACATTATT
CATTTGTTTA CCGATCAGAT AACCCCGACT ACCGTCTCCT CTCTCTCTCT
CTCTCTCTCA CACACACACA CACAGACACA CACACACACA ACTCCTGCTT
CCACTCCCCT TCCTGACTAC CATCTCTCTC TCT
Go back to index
wmc(12c10.2)
Plate reference : 12c10.2
WMC locus number : WMC Length of sequence : 157
Last updated : Mon, Mar 16, 1998 at 4:40 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end, 3' end not located. Multiple inserts in this clone, this is the second insert. (CT)50 47 to 146, (AT)5 147 to156. No room for primer.
PCR Comments :
Length of sequence : 157 Consensus sequence is :
..
GTACTTGAGC TTCCAGTTCA TCATTGTTTG GCCAAACCAA AACTCACTCT
CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTATAT
ATATATA
Go back to index
wmc(12d10)
Plate reference : 12d10
WMC locus number : WMC Length of sequence : 246
Last updated : Tue, Mar 3, 1998 at 1:00 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end (NB 5' linker corrupted). No substantial microsatellite.
PCR Comments :
Length of sequence : 246 Consensus sequence is :
..
GAATCCGGGA TGTAGGGCGC GGCGGCCGAG GTGTCCCCGT TGGCGGCCGG
CGGCGGCGGG GTGGACGTCT TGGACGGGTA GAGGTGGCGG AACAGCACGC
CGGCGAAGAA GAGGAGCTGC TCCGAGAAGG GCAGCACCAG CGGGCCGAGG
GTGGTGATGT TGGTCTTGAG CGCGTGGCCG CCGACCTCCA CCAGGTCGCG
GCTGATGGAC AGGCCCTCGA TCCGCTGCTC GTCCTCCTCC TGGTAC
Go back to index
wmc(12e10.1)
Plate reference : 12e10.1
WMC locus number : WMC Length of sequence : 175
Last updated : Tue, Mar 3, 1998 at 1:00 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. Multiple inserts in this clone. This is the first insert. No substantial microsatellite.
PCR Comments :
Length of sequence : 175 Consensus sequence is :
..
GTACCCCGTG CCAGTGGTAT GTGATAAATA TGGGAGCGAG GCTCCACAAC
TTTAAGATGT GAAATGTTGG GCACGGGGGT TACTACCAAT CGAGTGGACT
CTATGTTAGT GTCGTCTAGG GAAAGATAGT GATTGGGTGC TTACCCCGCC
ACCGCCGCCA CCGCCGCCAC CGGCG
Go back to index
wmc(12e10.2)
Plate reference : 12e10.2
WMC locus number : WMC Length of sequence : 68
Last updated : Tue, Mar 3, 1998 at 1:00 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. Multiple inserts in this clone. This is the second insert. (GT)6 13 to 24. No room for primer.
PCR Comments :
Length of sequence : 68 Consensus sequence is :
..
GTACAGACTA TTGTGTGTGT GTGTGCTCAT TTGATACTTT ATGTCTGTGT
GTGAGATACT TGTATGAT
Go back to index
wmc(12f10)
Plate reference : 12f10
WMC locus number : WMC Length of sequence : 6
Last updated : Tue, Mar 3, 1998 at 1:00 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : No insert in this clone (failed blue-white screen)
PCR Comments :
No sequence available for this clone
Go back to index
wmc(12g10)
Plate reference : 12g10
WMC locus number : WMC Length of sequence : 6
Last updated : Tue, Mar 3, 1998 at 1:01 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : No sequence obtained 2.3.98.
PCR Comments :
No sequence available for this clone
Go back to index
wmc373(12h10.1)
Plate reference : 12h10.1
WMC locus number : WMC373 Length of sequence : 172
Last updated : Mar 25 Aož 1998 at 14:52
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at both ends. Multiple inserts in this clone. This is the first insert. Bases 148 to 170 (complement) show homology to 3a12 bases 53 to 75 (23 in longest run, maxScore = 59). (CA)9 79 to 96, (CA)5 99 to 108.
PCR Comments : 61C anneal, polymorphic on acrylamide (though complex).
Forward primer details :
TAggAgTAggTcAATgTgTcgc at 24 length 22 bases, Tm 61
Reverse primer details :
TATcTcAcTTccTATggcTTcg at 139 length 22 bases, Tm 60
Expected size of amplified fragment (Chinese Spring=) 137 bases.
Length of sequence : 172 Consensus sequence is :
..
GTACACTACA CACCATCTCT CTGTAGGAGT AGGTCAATGT GTCGCTCTCT
CTAACACACG CATGCTGTTA AATACAGACA CACACACACA CACACACGCA
CACACACAAG TTCATAGAGT AGGAATATCA TGCGAGTGCG AAGCCATAGG
AAGTGAGATA CAAATGGAGT AC
Go back to index
wmc(12h10.2)
Plate reference : 12h10.2
WMC locus number : WMC Length of sequence : 177
Last updated : Mer 26 Aož 1998 at 11:53
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. Multiple inserts in this clone. This is the second insert. (GT)8 124 to 139, (GT)4 152 to 159, (GT)5 162 to 171. No room for primer.
PCR Comments :
Length of sequence : 177 Consensus sequence is :
..
GGTTGATATC TGAGGTAGAA CTGCCCCGAG GTATGAAGGA CATCTTGATG
GATGATGTCC GCAAAGTCCG ACTGGATGCG AAAGAATTCT TGTCTGAGGT
CCACGTACAT GTGTGTATGT GTAGTGTGTG TGTGTGTGTA TGTGTGTATG
CGTGTGTGTA TGTGTGTGTG TGGGTAC
Go back to index
wmc(12a11)
Plate reference : 12a11
WMC locus number : WMC Length of sequence : 391
Last updated : Mon, Mar 16, 1998 at 4:46 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at both ends. (GT)30 330 to 389. No room for primer.
PCR Comments :
Length of sequence : 391 Consensus sequence is :
..
GTACCAGATC TCTGCATTGC TCAAACCGTC AACTCATTGG CGTCAACTCA
AGCAACTCAA AATACGATCA ATGATAATTC TTCAGTATTT TGGATGTTGA
TAATTTTTCT TTAGTATTTT GGATGTCGAT AATTTTTCTT CAGTATTTTT
GACGTTGATA ATTTTTTCTA AAAGCTTTGT CAATGTGTCG ACTTTACAGA
AAATCTATAA CACACAATAT TTTGAGACGC AGGGAGTATA ATTAAATCTC
CTAGATCTTG ATTTATTTTT ATCATCCATT TTAGTTTCAG AGTTTAAATT
TCTTGGTTCT TAATTTAAAT TGACTTGATG TGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTA C
Go back to index
wmc(12b11)
Plate reference : 12b11
WMC locus number : WMC Length of sequence : 6
Last updated : Tue, Mar 3, 1998 at 1:01 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : No insert in this clone (failed blue - white screen)
PCR Comments :
No sequence available for this clone
Go back to index
wmc(12c11)
Plate reference : 12c11
WMC locus number : WMC Length of sequence : 6
Last updated : Tue, Mar 3, 1998 at 1:01 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : No sequence 2.3.98.
PCR Comments :
No sequence available for this clone
Go back to index
wmc374(12d11)
Plate reference : 12d11
WMC locus number : WMC374 Length of sequence : 282
Last updated : Mer 26 Aož 1998 at 12:17
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 1 to 59 show homology to 14c4 bases 356 to 414 (59 in longest run, maxScore = 95). (TC)4 162 to 169, (TC)6 172 to 183, (TC)6 186 to 197, (CA)4 215 to 222, (CA)5 225 to 234.
PCR Comments : 51C anneal, smear.
Forward primer details :
AcgAATTgAgAgAgATggTT at 123 length 20 bases, Tm 56
Reverse primer details :
cAATAcgTTgTgTATAcATgAgA at 255 length 23 bases, Tm 55
Expected size of amplified fragment (Chinese Spring=) 155 bases.
Length of sequence : 282 Consensus sequence is :
..
CTAAGGAGAG AAATGGGTAT TCACGAAGAG ATTGTGCGGG CCTTGAGGTG
GGCAGGGGCT GGGTGAGGGT GTCAAAGTGT GCGCGTTGAT GCATGTGTTG
CATGCGACCG TGCGAGGGAC GGACGAATTG AGAGAGATGG TTCTTGTGTT
ACGGATGCTC ATCTCTCTCT GTCTCTCTCT CTCCCTCTCT CTCTCTCTTA
CACAAATACA CACGCACACA CATACACACA CACAAGTAAA CTAGAAGATC
ATTCTCTCAT GTATACACAA CGTATTGGCA TC
Go back to index
wmc(12e11)
Plate reference : 12e11
WMC locus number : WMC Length of sequence : 284
Last updated : Mer 26 Aož 1998 at 12:25
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. Bases 143 to 189 (complement) show homology to 2h11 bases 95 to 141 (47 in longest run, maxScore = 127). (CA)5 28 to 37, (CA)9 40 to 57, (CA)16 94 to 125, (CT)10 70 to 89. Too difficult to make primer.
PCR Comments :
Length of sequence : 284 Consensus sequence is :
..
CCACCACCCC CCACACTAAG ACTCCATCAC ACACACACGC ACACACACAC
ACACACACTA AGACTCAATC TCTCTCTCTC TCTCTCTCTC CCTCACACAC
ACACACACAC ACACACACAC ACACACTGAG ACTCCATCTC ATACACACAT
GCTCTAGGCG GAGCATTTGT TCCTACCACC CTTCATCCAC CCTTACCCAT
ATGATAAACA ATCACCTTAA TTTACTTGTA TAACATGGAC AAATTCCACT
TTACTTTAGT AGTTAGCAAA CTTATCATCT GTAC
Go back to index
wmc375(12f11)
Plate reference : 12f11
WMC locus number : WMC375 Length of sequence : 328
Last updated : Mer 26 Aož 1998 at 12:43
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end and to insert at 3' end. Bases 173 to 188 show homology to 8h1 bases 212 to 227 (16 in longest run, maxScore = 36). (GT)9 80 to 97, (TG)7 205 to 218.
PCR Comments : 61C anneal, polymorphic on acrylamide.
Forward primer details :
cgccgAccAAAAAcTcATAA at 56 length 20 bases, Tm 63
Reverse primer details :
gATTgAcATgAAAcTATggAccc at 231 length 23 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 198 bases.
Length of sequence : 328 Consensus sequence is :
..
GTACCGTCAA CTTGCAACTA TGGGGTGTGT GTGTTTGTCG AGGCCCCTAG
TTGCACGCCG ACCAAAAACT CATAACTAGG TGTGTGTGTG TGTGTGTTTG
TCGAGGCTCC ATGTTGCAAG CCGAACATCG ATTCGCAACT ATGGGGTGTG
TGTGTGTTTG TCGAGGTCCT AGTTGCATGC CGACCATCGA CTCGCAACTA
GGGTTGTGTG TGTGTGTGTT TGTTTGTCGA GGGTCCATAG TTTCATGTCA
ATCATCAAGG GTCCCAGTTG CATGTCAACC ATTGACTTGC AACTAGGGGA
GTGTATGTTT GTCAAGCGTC CCCAGTTG
Go back to index
wmc(12g11)
Plate reference : 12g11
WMC locus number : WMC Length of sequence : 546
Last updated : Lun 5 juil 1999 at 17:23
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at both ends. Bases 290 to 349 (complement) show homology to 5e11 bases 280 to 339 (60 in longest run, maxScore = 160). No substantial microsatellite. Bases 106 to 124 show homology to 26h10 bases 73 to 91 (complement) (19 in longest run, maxScore = 62).
PCR Comments :
Length of sequence : 546 Consensus sequence is :
..
GTACATGATA GCTACATTGG TTGTTTGAAG AAACATCACT GTAACTTTGG
CATGCACAAC TGAAAAGGTT TATTTAAATA GAAAAAATGT GATATGTGAG
TGTCCAATCT TTATAGCGTT GAATTGATAT TATACCTTTG GCCACGATAT
GAAGTAGATA TTGATTTATG TTCAAGCGAT GCACGTCCAC GATCGCTAGA
TAGTGATACG TGAATGAATT ATGCAATGTC TCTCACACGC ATACATATCT
CATTTCCCTG TGGGCATCGG AATCACACAC GCGCACTTCG TGTATTTCTC
TCCCTCCGTC AAGGTTAGAA TTCGTCTTTC TACCCCGTCC TACAAGTCTC
TCACACAGAA AACACACATG CTCTCTCTGT CGAACACGCC CACCCCTTTA
ATTCCGCCCA CCCATAGCCA CTAATGTCTC TCACACATAT GCTATCTACC
TATCCCTTAA TATAGCTAGA TATGTGTCAC ACAAACTTCT TCTCCCTACT
AGCAAGATGC CCATGCGTTG CACGGAACAT CAAGATGCAT TTGTAC
Go back to index
wmc(12h11)
Plate reference : 12h11
WMC locus number : WMC Length of sequence : 6
Last updated : Tue, Mar 3, 1998 at 1:03 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : No insert in this clone (failed blue - white screen)
PCR Comments :
No sequence available for this clone
Go back to index
wmc(12a12.1)
Plate reference : 12a12.1
WMC locus number : WMC Length of sequence : 220
Last updated : Tue, Mar 3, 1998 at 1:04 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Multiple inserts in this clone. This is the first insert. Trimmed to insert at 5' end (NB 5' linker corrupted) and to Rsa1 at 3' end Bases 178 to 195 (complement) show homology to 9g3 bases 26 to 43 (18 in longest run, maxScore = 38). No substantial microsatellite.
PCR Comments :
Length of sequence : 220 Consensus sequence is :
..
TAGCCGCCGC GCCACCCAAC CCTAACCCTA CCCAGCGCCG CCGCTGGCCA
ACCCACTCGA GCCGCCGCCG CCTTCCCTCC GTCGCCGCTG CTCCATGGCC
TCTCCCCACT CTAGCAACTC CAACCCGTTC GCCGGACCTG AGCCCGATGC
AACCGTTGTT CGCGATCTCA ACATCCACAC CCGCGTCCCC ATCAAGCTCG
ACCAATCCAA CTCCTCGTAC
Go back to index
wmc376(12a12.2)
Plate reference : 12a12.2
WMC locus number : WMC376 Length of sequence : 261
Last updated : Mer 26 Aož 1998 at 13:53
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Multiple inserts in this clone. This is the second insert. Trimmed to Rsa1 at 5' end and to insert at 3' end. Bases 65 to 115 (complement) show homology to 11b2 bases 64 to 114 (51 in longest run, maxScore = 69). (GT)16 115 to 146, (GT)17 201 to 234.
PCR Comments : 51C anneal, polymorphic on acrylamide.
Forward primer details :
TcTcAAccAccgAcTTgTAA at 33 length 20 bases, Tm 59
Reverse primer details :
AcATgTAATTggggAcAcTg at 235 length 20 bases, Tm 58
Expected size of amplified fragment (Chinese Spring=) 222 bases.
Length of sequence : 261 Consensus sequence is :
..
GTACGATGGG CTCTATAGCG TCCCGAGTTG CATCTCAACC ACCGACTTGT
AACTAGGGTG TGTTTGTGTT TGTTGAGGAC CCCTAGTTGC AAGTTGCCCA
TCGACTCGCA ACTAGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTTTTA
ACGTGGCCCC CAGTTGCAAG TTGGCCATAG ACTCGCAACT AGGGGAGAAT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTCAGTGT CCCCAATTAC
ATGTCCATAA C
Go back to index
wmc(12b12)
Plate reference : 12b12
WMC locus number : WMC Length of sequence : 6
Last updated : Tue, Mar 3, 1998 at 1:04 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : No insert in this clone (failed blue -white screen).
PCR Comments :
No sequence available for this clone
Go back to index
wmc(12c12.1)
Plate reference : 12c12.1
WMC locus number : WMC Length of sequence : 260
Last updated : Lun 8 FŽv 1999 at 10:07
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Multiple inserts in this clone. This is the first insert. Trimmed to insert at 5' end and to Rsa1 at 3' end Bases 19 to 51 (complement) show homology to 3h9 bases 202 to 234 (33 in longest run, maxScore = 78). No substantial microsatellite. Bases 149 to 191 show homology to 22d6 bases 87 to 129 (complement) (43 in longest run, maxScore = 100).
PCR Comments :
Length of sequence : 260 Consensus sequence is :
..
GCCCGTCGAT CGCGCGACGA CATGATGTTT GATTTACAAG TGAAGAACAT
TTTGTGCTAC CTTGAAGACT TCAACAACGG CGTCCCAGAG GACGACAACG
ACAATGACAG TGTGGCACGC CGCCCCCGCC ACCGCCGGAA ATAGTTTTTT
GGGGGTTTAA TACTGTATCT CGAATTCTCG ATCATATGAA TATAAATTCG
CAGTATGACT GAATGAAAGA TATGGTTTGA ACAAACTTGT GTTTTTCTCT
CTTAATGTAC
Go back to index
wmc(12c12.2)
Plate reference : 12c12.2
WMC locus number : WMC Length of sequence : 307
Last updated : Tue, Mar 3, 1998 at 1:04 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Multiple inserts in this clone. This is the second insert. Trimmed to insert at 5' end and to Rsa1 at 3' end Bases 99 to 109 show homology to 5h11 bases 6 to 16 (11 in longest run, maxScore = 20). No substantial microsatellite.
PCR Comments :
Length of sequence : 307 Consensus sequence is :
..
GCCCCGCGCG ACGCCACGCG CCGCCCCGCA CCTCTCTCAC TCTCTCTCGT
TCTCCCTCCT CTGTTGGATC CCTCTCTCTC GACCCGCCCG AGCGCTGCCG
TCGCCGCCGC TCGCCGTTGC TGTAGCTACC GCCTCCCCCA CGCCCTCTCC
TCGTGCCGAG AAGCTCCGCC ACGTCTCCGT CCACCTCTCC GTCGAGCCAC
GCGAAGCGGG GAAGCCCTAA GAGCCACCGT CGCCATCGTC TTCATCTCCG
GGCACCGGGA GATCGTCTTC GCTGCCCCGC CTGTGAATGC CCTCGACTCG
ACCGTAC
Go back to index
wmc377(12d12)
Plate reference : 12d12
WMC locus number : WMC377 Length of sequence : 530
Last updated : Mar 22 DŽc 1998 at 9:42
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. Bases 404 to 482 (complement) show homology to 13b6 bases 47 to 125 (79 in longest run, maxScore = 89). (CA)8 186 to 201, (TC)8 213 to 228, (CA)5 230 to 239, (CA)7 242 to 255, (CA)8 296 to 311, (CT)6 335 to 346. Bases 75 to 93 show homology to 20e11 bases 140 to 158 (complement) (19 in longest run, maxScore = 46).
PCR Comments : 61C anneal, smear.
Forward primer details :
AAATTAcATccAccAcAgAAgg at 156 length 22 bases, Tm 60
Reverse primer details :
gATgAAgggTggTAggAAcAAA at 410 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 276 bases.
Length of sequence : 530 Consensus sequence is :
..
GGTGTCTCTC GAACAAACAC GTTCTCTCGA AGTCGACTCC TCTAACGCGC
ACACACCTTC TCTTCCCTCT CTATGGGCAT TTTCTCTCTC GCACCCCATC
GTTGATGGCC TCTGCCATAC ACATCACCTC TCTATGATGA AAGCGATGCA
CACTTAAATT ACATCCACCA CAGAAGGACC CGCGACACAC ACACACACAC
ACTAAGACTC CATCTCTCTC TCTCTCTCAC ACACACACAA ACACACACAC
ACACACGCAA GCACGCACGC CCCCCGACTC CATCTCTCTC CCTCTCACAC
ACACACACAC AAACTAAGAA TCCATCTCTC TCTCCTCTCT CTCTCTCACA
CATACACCCC CCACACACAC TAAGGGTCCA TCTCACACAC GCATGCTCTA
GGGGGAGCAT TTGTTCCTAC CACCCTTCAT CCAACCTTAC CCGTATGATA
AACAATCACC TTTATTTACT TGCATAACAT GGGACAAATT CCACTTTACT
TTAGCAGTTC AGCAAACTTA TCATCTGTAC
Go back to index
wmc(12e12)
Plate reference : 12e12
WMC locus number : WMC Length of sequence : 251
Last updated : Mer 26 Aož 1998 at 14:57
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end (NB 5' linker corrupted) and to insert at 3' end. Bases 1 to 53 show homology to 19a6 bases 133 to 185 (53 in longest run, maxScore = 44). Bases 1 to 251 show homology to 12g12.2 bases 1 to 251 (complement) (251 in longest run, maxScore = 128), 12e12 has precedence. (CAA)13 113 to 151, (CAA)6 206 to 223, (CAA)7 227 to 247. No room for primer.
PCR Comments :
Length of sequence : 251 Consensus sequence is :
..
GTACTCGCAA GCAAGGAGCT ACACTACATA TGCATGGGTA TATGTGTAAA
GGGTCATATC GGTGGACTGA ACTGCAGAAT GCCAGAATAA GAGGGGACAA
CGACAACAAC GACAACAACA ACAACAACAA CAACAACAAC AACAACAACA
ACCGCAACAA CCGCAACAAC AACAGCAACA ACAGCTACAA CAGCAACAGC
AACAGCAACA ACAACAACAA CAATAACAAC AACAACAACA ACAACAACAG
C
Go back to index
wmc(12f12)
Plate reference : 12f12
WMC locus number : WMC Length of sequence : 264
Last updated : Tue, Mar 3, 1998 at 1:05 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Rsa1 at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 264 Consensus sequence is :
..
CTTAGCTTGT TCGCACTTGC GCTAATGGTG CCGCCACCGC CGCCGCCGTC
TGATCAAAGT AGGCTCATCG TCGTCCGCTT GGTCGTCGGT TTCGCGGCCT
TCCTGTTCGC AGTGTTCCTC TGCGGCTGCT GCAAGGGATA TCGAAACAGC
CAGGCTCGGG CCGTGGCCGC TCAACACAGC CCGCAGCCAC GGCTGCTCCG
AGATCTGCAG CTTCGCGGGG CCTGCGCCGC CAAACCGACG GCCCGTCTCC
CGGCGTTCAC GTAC
Go back to index
wmc378(12g12.1)
Plate reference : 12g12.1
WMC locus number : WMC378 Length of sequence : 321
Last updated : Mer 26 Aož 1998 at 15:05
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Multiple inserts in this clone. This is the first insert. Trimmed to insert at 5' end, extraneous linker from Munich reoved at 3' end. Bases 243 to 273 (complement) show homology to 3d2 bases 162 to 192 (31 in longest run, maxScore = 23). (CT)11 252 to 273, (CT)8 286 to 301.
PCR Comments : 51C anneal, polymorphic (but complex) on acrylamide.
Forward primer details :
TTgAAgAgcTgATTgAgTAg at 146 length 20 bases, Tm 52
Reverse primer details :
cgATAgAAcTgAAgATTgTc at 302 length 20 bases, Tm 52
Expected size of amplified fragment (Chinese Spring=) 176 bases.
Length of sequence : 321 Consensus sequence is :
..
GTACATCAGA TCGAAGAAAA ATAAAACACA ATGAATGAGA AAGATCCTTT
ATAATACTAA AAGTTACCGT GAAGACCTTT CCAAAAATCT GGTGAAAAAA
CCATAGAAGA ACAAACAAGC ACAAGCTGGA GTAACATCAA TGACTTTGAA
GAGCTGATTG AGTAGCCCAC CCCAATAAGT GAGGACCCGT GATCAATCCT
ATTCTTCCTG TGGAAGTAGC AACTTGAGGA AGCTGGAGCC AGTCCCTCCA
TCTCTCTCTC TCTCTCTCTC TCTGTCTCTC TCTGTCTCTC TCTCTCTCTC
TGACAATCTT CAGTTCTATC G
Go back to index
wmc(12g12.2)
Plate reference : 12g12.2
WMC locus number : WMC Length of sequence : 251
Last updated : Mon, Mar 16, 1998 at 4:59 pm
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Multiple inserts in this clone. This is the second insert. Trimmed to insert at 3' end and to Rsa1 at 3' end. Bases 1 to 251 (complement) show homology to 12e12 bases 1 to 251 (251 in longest run, maxScore = 128). (TTG)7 5 to 25, (TTG)6 29 to 46, (TTG)13 101 to 139. True duplicate, 12e12 has precedence.
PCR Comments :
Length of sequence : 251 Consensus sequence is :
..
GCTGTTGTTG TTGTTGTTGT TGTTGTTATT GTTGTTGTTG TTGTTGCTGT
TGCTGTTGCT GTTGTAGCTG TTGTTGCTGT TGTTGTTGCG GTTGTTGCGG
TTGTTGTTGT TGTTGTTGTT GTTGTTGTTG TTGTTGTTGT CGTTGTTGTC
GTTGTCCCCT CTTATTCTGG CATTCTGCAG TTCAGTCCAC CGATATGACC
CTTTACACAT ATACCCATGC ATATGTAGTG TAGCTCCTTG CTTGCGAGTA
C
Go back to index
wmc379(12h12)
Plate reference : 12h12
WMC locus number : WMC379 Length of sequence : 433
Last updated : Lun 30 oct 2000 at 16:59
Owner : Mohler, Munich Date at Agrogene : 2.3.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at both ends. Bases 80 to 179 (complement) show homology to 9f3.1 bases 222 to 321 (100 in longest run, maxScore = 104). (CT)15 283 to 312, (GT)5 315 to 324. Bases 121 to 156 show homology to TW1h09 bases 125 to 160 (36 in longest run, maxScore = 66). Bases 120 to 181 show homology to TW2b04 bases 2 to 63 (62 in longest run, maxScore = 51). Bases 137 to 181 show homology to TW6h09.1 bases 188 to 232 (complement) (45 in longest run, maxScore = 81). Bases 80 to 118 show homology to TW6d10.2 bases 246 to 284 (complement) (39 in longest run, maxScore = 73). TW6h09.1 is a duplicate of 12h12. 12h12 has priority.
PCR Comments : 61C anneal, smear.
Forward primer details :
AcAAAccTTgTTggTcccTc at 249 length 20 bases, Tm 61
Reverse primer details :
gAgAAccATAcATAgTgTgcgA at 375 length 22 bases, Tm 60
Expected size of amplified fragment (Chinese Spring=) 148 bases.
Length of sequence : 433 Consensus sequence is :
..
GTACCCCATG AACATGTTGA AAGTCAAATT AATGAACTTG ATATACGCAT
ATCTCCATTC ATGTGTGGAT TGCAGACAGC ATGTTCTCCA ATTTAAATAT
TTGAATGCAA GTTTATATTG AAACATGGTT TATATCAGTC TTTGATGCAT
AAAACGCGAC CTCCCCCTCT CCCGGACTCC TTCTCTATCT CCCTCTCCCT
CTCTCTCTCT CGCCAATAAT CTTCAATTAT GTCGCATGCA TCCAACACAC
AAACCTTGTT GGTCCCTCCC CTCTCTCTCC GTCTCTCTCT CTCTCTCTCT
CTCTCTCTCT CTTTGTGTGT GTGTGGGGGG TCTTTCTAGT TCACATGCAT
ATATACTCCA TCTATAGGTG TCTCTCGCAC ACTATGTATG GTTCTCTACT
CCAAGCTAAA TATCTTGGGT GCACTCATTG TAC
Go back to index
wmc(10A7)
Plate reference : 10A7
WMC locus number : WMC Length of sequence : 592
Last updated : Jeu 27 Aož 1998 at 12:03
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at 3' end. 5' end not located. Bases 490 to 520 show homology to 6b4 bases 211 to 241 (31 in longest run, maxScore = 68). No substantial microsatellite.
PCR Comments :
Length of sequence : 592 Consensus sequence is :
..
CGCCAGTGAA TTCCTCGAGG CGyGtGACTA GTcCACGTgG TTGCACCGAC
CTGTGCTCCG CCGCTGCACC ACCCCTTTGG ACTGTCGCAC CAGAGCCCGC
GGTCCCTGCA ACCGGCCTGA GGTCTTCCAC CGTCGCCCCG ACCTgGCCCG
CCACCGCTTC ATCGCTCCTT CGGGTTGTAA CGCCGCAGCC CATGGTCCAC
CACCGTCCCC GCATGTCGAC CTCTCATGGT ATGTGTTGCG CCGCCTCCTC
TGGCGTGGGA ACrCCACTGT CCGCGTCGGT CtTTGTCATG CTCTCTTGTT
CCTTGTCTAC TTCAAGCACC ACCGCCATGC TACTAACCTA GCCGTGCCGC
CATTAGGCCG CCCCCGCCGC TCATCTTAGG TCACCACCGC CGCTACCTCC
GTAGCCGCCG CCGCCGTCCA CCCCCTTCGT CTTCGTCCCA GCACCAGCCT
GTCGCTAGCG TCGCCGTCAT CTACCCAGAC CACTTCGTCT ACTCCGACCA
CCATTGGTGA CATCGGCCCC CACACTGATT GGTGCCGCAA CCATCATCGA
GTCCTTCTCT GCTACCTCTC TCACTTCTCT GACATGGTGT AC
Go back to index
wmc(10b7)
Plate reference : 10b7
WMC locus number : WMC Length of sequence : 354
Last updated : Jeu 27 Aož 1998 at 16:06
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end, 3' end not located. Bases 279 to 335 (complement) show homology to 9d1 bases 63 to 119 (57 in longest run, maxScore = 83). (CA)26 162 to 213. Duplicate with 9d1, 9d1 has precedence.
PCR Comments :
Length of sequence : 354 Consensus sequence is :
..
CCAAGGCCAC CCTTTCATGC GCCTCGCCCT GTTCAACAGT CTGCACCGGC
CAAGCCCTAT GGGGGTCCAA CCAACAATGC CTCCTCCACG TACACTACAC
AACATCTCTC TGTAGGAGTA GGTCGATCTA TCGCTCTCTC TAACACACAC
ATGGTGTTAA ACACACACAC ACACACACAC ACACACACAC ACACACACAC
ACACACACAC ACACGCCGTG CGCACGCACA CGCACGCACC TTGGTCCCGG
TGCACCTTCT AACGTGACTT ATTACACCTA GACGGAGGGA GTAGTAAGTA
TACGAGATAC GGTGGCACAC TGACTTAAnT CGAATAGTCC ACnCnCCTCG
AGGA
Go back to index
wmc380(10c7)
Plate reference : 10c7
WMC locus number : WMC380 Length of sequence : 259
Last updated : Jeu 27 Aož 1998 at 16:13
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : No trimming done to sequence at Agrogene, ends not located. Bases 134 to 169 (complement) show homology to 5g2 bases 88 to 123 (36 in longest run, maxScore = 73). (CT)6 79 to 90, (CA)10 91 to 110.
PCR Comments : 51C anneal, polymorphic (but complex) on acrylamide.;
Forward primer details :
cTgAAAgATgTATTTAcgAgcA at 32 length 22 bases, Tm 57
Reverse primer details :
AATTAAAAAcTgTcAcgAccAA at 167 length 22 bases, Tm 58
Expected size of amplified fragment (Chinese Spring=) 157 bases.
Length of sequence : 259 Consensus sequence is :
..
GTGGACTACC GAGCATCAGC AATGCATATG GCTGAAAGAT GTATTTACGA
GCATCGACCG ATGGATCTCT CTTTCTATCT CTCTCTCTCT CACACACACA
CACACACACA CGCACACACA CACnCnCnCG CACACACGCA CAAGTGGGAC
CCGTTGAATT ATTTATTTGG TCGTGACAGT TTTTAATTAG GTTCCACTGT
AATCTAACGT TTTTCTTAAG TTACTAATTG nGCTCAGTGA CTTCAAAAGT
TGTTAGTCC
Go back to index
wmc(10d7)
Plate reference : 10d7
WMC locus number : WMC Length of sequence : 568
Last updated : Mar 30 mai 2000 at 9:54
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end , 3' end not located. Bases 187 to 346 (complement) show homology to 17d8.2 bases 353 to 512 (160 in longest run, maxScore = 135). No substantial microsatellite. Bases 2 to 183 show homology to 10d6 bases 14 to 195 (complement) (182 in longest run, maxScore = 156).
PCR Comments :
Length of sequence : 568 Consensus sequence is :
..
GTACTGGCGC TTTGGGCACT GGAGCTGCCT TACTAACTAC TCTTGTTTGG
GAGCTCTGTG GTGGAGATGG TGCTGTGTCA ACATGAACTG GGTTACTATC
TGTTGGGGTT GGGGTTAGAT TGGGTGAAGC CGGTTCTCTG TCCATCGTAG
TAGGGGTAAA ATCTGCGAGA GTCTGTGCTC yTGcTTACGC GCCTCGAGGA
ATTCACTGGC CGTCGTTTTA CAACGTCGTG ACTGGGAAAA CCCTGGCGTT
ACCCAACTTA ATCGCCTT.G CAGCACATCC CCCTTTCGCC .AGCT.GGCG
TAATAGCGAA GAGGCCC.GC A.CCGATC.G CCCTTCCCAA CAGTTGC.GC
AGCTGAATGG CGAATGGCGC CTGATGCGGT ATTTTCTCCT TACGCATCTG
T.GCGGTATT TCACACCGCA TATGGTGCAC TCTCAGTACA ATCTGCTCTG
ATGCGCATAG TTAAGCAGCC CCGACAACCC GCAACACCGC TGAGCGCCTG
ACGGCTGTCT GTCCGGCATC GCTACAGACA GCTGTGACGT CTCCGGGAGC
TGCATGTGTC AGAGGTTT
Go back to index
wmc(10e7)
Plate reference : 10e7
WMC locus number : WMC Length of sequence : 494
Last updated : Jeu 27 Aož 1998 at 16:30
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at 3' end, 5' end not located. (CA)32 177 to 240. Too difficult to make primers.
PCR Comments :
Expected size of amplified fragment (Chinese Spring=) 202 bases.
Length of sequence : 494 Consensus sequence is :
..
rGkATTTAsC CmAAGCCTGC CATGCC.TGm cAGGTysGaA CTCTAGAGGa
ATcCCCTcCG AGGCGcCGTG GaACTAACAT ACCTTTGGTA ACATAATGAA
GCTTAwTTTC CTACAGCAAA gGGCaATAmC CGcCCTTGGC TrGCmwkGAG
TTaAgGGAAT TTAAGTTGTC CTTCAACACA CACACACACA CACACACACA
CACACACACA CACACACACA CACACACACA CACACACACA TCAGCTTGCT
CATTGTCGGC CCGTGGCACG TGAAGGAACT CGCACCCGTC AAAGTATCCG
CTGATCtgct ggacaaggaa gcggtagctc accatgttTG CTGGACAAGG
AAGCGGTAGC TCACCATGTT TGCATCCTTG GCATACCAGT CGCCTGATGA
CTGCTGGACC ACCAAGTCCG AGTCGCCGTA GCACAGCACT CAGCGGATGC
CAATCTCTTT GGCTAGTCGG AGCCCGTGGA CGAATGCCTC GTAC
Go back to index
wmc381(10f7.1)
Plate reference : 10f7.1
WMC locus number : WMC381 Length of sequence : 700
Last updated : Jeu 27 Aož 1998 at 16:46
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. (CA)8 409 to 424, (GA)28 425 to 480, (GT)17 69 to 102.
There are two microsatellites, the primers here are for the first.
PCR Comments : 51C anneal, complex product with many bands.
Forward primer details :
ATTAgggTTTTcgAcATgccAg at 17 length 22 bases, Tm 64
Reverse primer details :
gTTgTAgcAccggATTcgAcTT at 127 length 22 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 132 bases.
Length of sequence : 700 Consensus sequence is :
..
GnTCATCCCG ATGTGGATTA GGGTTTTCGA CATGCCAGCG GAATACAAAA
ACAGATGTGA GTTTCCATGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGAAAGAAT GAGTCGATGT GAACACAAGT CGAATCCGGT GCTACAACTC
CAAATGGCTT TrTAAgGTGC TGACTGGACG GAGGAGAGGT GGTGATCCAG
GTTGATCGCA ACTCTACACG kTTAGATGTG TAGCCAGAwT GrTAGAATCT
CCTGCCCtGT GACCgCGCGT GCACCACAGG TTCTGTTCTC CaTACTCCmT
CCmATGGTcT CwCACssCCm AGyTTGaAAG ATGCAAACTT CACGAACATC
ACTTGGTTCA GTTAGTCmAC GCGTGrACTA ACATGAATGG AGGCACTGAA
ACAGCGCGCA CACACACACA CACAGAGAGA GAGAGAGAGA GAGAGAGAGA
GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GTCTACTTAA CTTGCTTCTG
TTCCGGCGGC GGCGsGCGrT AGrGTGcCGs CTGkTTCAGA TCCAGGAGCA
GCCGTCGCCG TGGTGGGAGG GCGAGATGAC CGGAGTTGCG TCGACCGGAA
GGAGGAGAAG TGAGCTGCGT TGGCGGACGG CGAGGCGGAG GTGAAGGACA
GCAGCGGCGG GCAGCGGAGA GCAGTGCAGA GCAGGGGGGC GCCGGCCGTG
Go back to index
wmc382(10f7.2)
Plate reference : 10f7.2
WMC locus number : WMC382 Length of sequence : 700
Last updated : Jeu 27 Aož 1998 at 17:08
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. (CA)8 409 to 424, (GA)28 425 to 480, (GT)17 69 to 102.
There are two microsatellites, the primers here are for the second.
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide - probably two polymorphic loci, 2 monomorphic loci.
Forward primer details :
cATgAATggAggcAcTgAAAcA at 382 length 22 bases, Tm 66
Reverse primer details :
ccTTccggTcgAcgcAAc at 572 length 18 bases, Tm 67
Expected size of amplified fragment (Chinese Spring=) 217 bases.
Length of sequence : 700 Consensus sequence is :
..
GnTCATCCCG ATGTGGATTA GGGTTTTCGA CATGCCAGCG GAATACAAAA
ACAGATGTGA GTTTCCATGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGAAAGAAT GAGTCGATGT GAACACAAGT CGAATCCGGT GCTACAACTC
CAAATGGCTT TrTAAgGTGC TGACTGGACG GAGGAGAGGT GGTGATCCAG
GTTGATCGCA ACTCTACACG kTTAGATGTG TAGCCAGAwT GrTAGAATCT
CCTGCCCtGT GACCgCGCGT GCACCACAGG TTCTGTTCTC CaTACTCCmT
CCmATGGTcT CwCACssCCm AGyTTGaAAG ATGCAAACTT CACGAACATC
ACTTGGTTCA GTTAGTCmAC GCGTGrACTA ACATGAATGG AGGCACTGAA
ACAGCGCGCA CACACACACA CACAGAGAGA GAGAGAGAGA GAGAGAGAGA
GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GTCTACTTAA CTTGCTTCTG
TTCCGGCGGC GGCGsGCGrT AGrGTGcCGs CTGkTTCAGA TCCAGGAGCA
GCCGTCGCCG TGGTGGGAGG GCGAGATGAC CGGAGTTGCG TCGACCGGAA
GGAGGAGAAG TGAGCTGCGT TGGCGGACGG CGAGGCGGAG GTGAAGGACA
GCAGCGGCGG GCAGCGGAGA GCAGTGCAGA GCAGGGGGGC GCCGGCCGTG
Go back to index
wmc(10g7)
Plate reference : 10g7
WMC locus number : WMC Length of sequence : 289
Last updated : Jeu 27 Aož 1998 at 12:04
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : No trimming done to sequence at Agrogene, ends not located. Bases 69 to 104 show homology to 7e9 bases 30 to 65 (36 in longest run, maxScore = 49). No substantial microsatellite.
PCR Comments :
Length of sequence : 289 Consensus sequence is :
..
CGTGGACTAA CATCTTTCTG CTAGCAGTGT TGTGTCCTCC TTCTGTTTTT
TCAACGATCT TCTTGTGGTT CACAGGAAAC CAGAAGTTGT GGAGGACGGT
GCAGCCTTGG GCGAACCCAT GGCCAAGTTG TTGAGTATGG TGCGGTGGCC
GTTTGTCGCG GCGGGGAAGC AGATCCGAGG CGGCGAACGA CGGcGTAGCG
GGAACAGCTC TGGTGCGATG GACCGGTTGC GATAGTGGAG CGGCGGCAAT
GAGGCGCAGG ACGGCGTGCT CGGAGTGGTT CTGTTAGTC
Go back to index
wmc(10h7.1)
Plate reference : 10h7.1
WMC locus number : WMC Length of sequence : 371
Last updated : Jeu 27 Aož 1998 at 12:04
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : Multiple inserts (2) in this clone, this is the first insert. Trimmed to insert at both ends. Bases 182 to 213 (complement) show homology to 12f2 bases 100 to 131 (32 in longest run, maxScore = 73). No substantial microsatellite.
PCR Comments :
Length of sequence : 371 Consensus sequence is :
..
GCGGGAACGC CACCGTCCGC GCCGGTCTTC GTCACGCTGT CAGAGTTCTT
CGCCTACTTT GAGCACTGCT GCCGCACTTC TAACCTAGCC GCCGCCGCTC
TTCTTTGGCC GCCGCCGCCC GTCCACCCCG TTCGTCTTCG TCCAGCACTA
GCCCGTCACC AGykTCGCyG TCwTCTACCC TGACCwCTTm sTCtactCCG
ACCACCsTTG GTGACATCsG mACCGCGCCG ATGGACGsCG CAATCGTCAT
TGAGTTCTTC TCTGCTGGTC CCTCCGACTT CTCCGACATG GCGGACAGCT
CGTGCAGGTC CCTCGTCTAC GCATGCCCGG TGCTGGCAAC ACCGATGCAT
GCCTTCATCC ACGACGTGTA C
Go back to index
wmc(10h7.2)
Plate reference : 10h7.2
WMC locus number : WMC Length of sequence : 317
Last updated : Lun 5 juil 1999 at 17:23
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : Multiple inserts (2) in this clone, this is the second insert. Trimmed to insert at both ends. Bases 88 to 118 show homology to 19c1 bases 26 to 56 (31 in longest run, maxScore = 39). (GT)10 141 to 160, (GT)12 238 to 261, (GT)10 263 to 282, (GT)5 291 to 300. No room for primer. Bases 19 to 43 show homology to 25h9 bases 188 to 212 (complement) (25 in longest run, maxScore = 33). Bases 105 to 138 show homology to 26g12 bases 210 to 243 (complement) (34 in longest run, maxScore = 65).
PCR Comments :
Length of sequence : 317 Consensus sequence is :
..
CAACTAGTTC AACTAAACAT TTACTAAAAA TAAACTAGTT ATATTAATTC
ATCTAACATA ACATTTCTAA CATTCTAAAA ATAAACTAGA TAGTTCTAAT
TCATCTAAAC ATTAGAAAAC AGAAAATAAG TAAAAAAATT GTGTGTGTGT
GTGTGTGTGT TTGTGTGTGT GAGTGTGTTT GTGTTTGTGT GTGTGTAGTG
TGTCtGTGTG TATGTGTGTG TGTGTGTCTG TGTGTATGTG TGTGTGTGTG
TGTGTGTGTG TAGTGTGTGT GTGTGTGTGT GTATGCGTAC GTGTGTGTGT
GGAGCGGGCC GAGCGTT
Go back to index
wmc(10a8.1)
Plate reference : 10a8.1
WMC locus number : WMC Length of sequence : 397
Last updated : Thu, Aug 27, 1998 at 11:07 am
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : Multiple inserts in this clone, this is the first insert. Trimmed to insert at 5' end and to Rsa1 at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 397 Consensus sequence is :
..
AGAAAAGGAA GGATAGCATT GGGCGCGGCT GACTGGCAGA TGAGGTCGGC
GGCGGCTTGC AGGAGCGCTG GCCGCGACCA GAGGCGGGCT CAACACGGGG
GCAAGCGCAC GGAAGGTTGG GAAGGGAGCG GCGGCGGCGA TCCGTATTTC
TCGATCCAGT GAGGGAAAGT AGGGCCGGGG AGGCATGATT CTGGTGGAAT
CGACCTGAAA ATCAAGGAGC TATGGGCGGG GCCGCAGGGA TCGGGGGCGC
GGAsTAGAAA GATTGGCAGA CGATGGAGTC TGCTCGGCAG AACATTTCAT
CCGAGACGTT CATCTGGATG GCAGACCTCT GACGTAATAT GGACAGTAGG
ATGTGTTTAG GTTTACTTGA TCTGAGGGTC CTGGTTATTC CGTGTAC
Go back to index
wmc(10a8.2)
Plate reference : 10a8.2
WMC locus number : WMC Length of sequence : 411
Last updated : Jeu 27 Aož 1998 at 12:04
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : Multiple inserts in this clone, this is the second insert. Trimmed to insert at both ends. Bases 288 to 304 show homology to 7f6 bases 37 to 53 (17 in longest run, maxScore = 31). No substantial microsatellite.
PCR Comments :
Length of sequence : 411 Consensus sequence is :
..
AGTAGTAGCG GAAGGrATCA CTCArGTTCA sGTTAACAGC GAGGGAATCG
ATCGGGGTTC AGTAACGTAG CTACTGCAAT CGCTCGGGTT CAGTTAdAAC
mAAmGcctcg ctcggtttcA Awt..AkArc gcAAtAm..t stytyycw.y
tctctsystc wtA.cayaym yachacaymc at.tctctcA hmamamacac
.a.amammmm wCwcayacwc AcAycaccac ACACACACAC GTGTAGGAGA
GAaAACGCcG CcAAACCcTC CATGCATCGC CCcGGCCCCc GACCACCCcA
CcGTAACCGG GAAGTCCCCG AAATTTTCCT CGCCCTCACT TATACCATGA
TTTTTTCCAT CATGGACGGC CCAAAGAATG TCATGTAGGT GCGTGAAAGA
ACmTGCGGTG C
Go back to index
wmc(10b8)
Plate reference : 10b8
WMC locus number : WMC Length of sequence : 885
Last updated : Mar 30 mai 2000 at 9:54
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : No trimming done to sequence at Agrogene, ends not located. Bases 268 to 632 (complement) show homology to 4f1 bases 28 to 392 (365 in longest run, maxScore = 277). No substantial microsatellite. Bases 564 to 609 show homology to TW4d11 bases 496 to 541 (complement) (46 in longest run, maxScore = 35).
PCR Comments :
Length of sequence : 885 Consensus sequence is :
..
hGyGTCGCTG TGTGTGTnkC GTGCGCGCGC GCyGGsTCGG GGmwGnGCwG
TATATGGCGy mGCybCGCkT dTTCGCGCGw CTykyGCTCT nCAAACCyTT
ykGAACTTTG rAGCCGTCCG AATTTTGTGk TGATksyTTs CGTTGCGAGT
GTGTTGCsTd GAGCCTTwTT GTGCAAAAAA CGCCCAGCAA ACGGCGsCCy
TTTTTACGGk TTCCTGCCCy TTTTGCTGsC CyTTTTGCTC AACATGTyCT
TTCCTGCGTT ATCCCsGGAT TCTGTGGwTA ACCGTATTAC CGCCTTTGAk
TGAGCTGATA CCGCTCGCCG CAGCCGAACG ACCGAGCGCA GCGAGTCAGT
GAGCGAGGAA GCGGAAGAGC GCCCaATAsG CaAACCGCCT CTcCCCGCGC
GTTGGCCGAT TCATTAATGC AGcTGGCACG AcAsGTTTCC CGACTGGaaA
GCGGGCAGTG AGCGcmACGC AATTAATGTG AGTTAGCTCA CTCATTAGGC
ACCCCAGGCT TTACACtTTA TGCTTCCGGC TcGTATGTTG TGTGGAATTG
TGaGCgGATA ACAATTTCAC ACAgGAAACA GCTATGACCA TGATTACGCC
AAGCTTGCAT GCCTGCAGGT sGACTCTAGA GGATCCCTCG AGGCGCGCCT
nAATCACTGG CCGTCGTTTT ACAACGTCGT GACTGGGAAA ACCCTGGCGT
TACCCAACTT AATCGCCTTG CAGCACATCC CCCTTTCGCC AGCTGGGCTA
ATAGCGAAGA GGCCCGCACC GATCGCCCTT CCCAACAGTT GCGCAGCTGA
ATGGCGAATG GCGCCTGATG CGGTATTTTC TCCTTACGAT CTGTnnCGGT
ATTTACACCG CATATGTGCA CTCTCAGTAC AATCT
Go back to index
wmc(10c8)
Plate reference : 10c8
WMC locus number : WMC Length of sequence : 562
Last updated : Lun 30 oct 2000 at 16:59
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at both ends of insert. Bases 438 to 497 (complement) show homology to 3g11 bases 86 to 145 (60 in longest run, maxScore = 47). (GT)14 482 to 509. Duplicate, 3g11 has precedence. Bases 236 to 246 show homology to TW7e11.2 bases 59 to 69 (complement) (11 in longest run, maxScore = 32).
PCR Comments :
Length of sequence : 562 Consensus sequence is :
..
GTACCTTCGA TCCTCGACAA TGTCCGGTCC TGATGTACGA GGCCGGTGGA
TGCCCTCTTC TGCCACGGAs GAGAGACGTG CTAAAGCCGA GAGATGCCAT
GTATTTAACC TACGATATTT CGCATAGGCT GCCTGCCsrr GGnAAGTTAT
CCCAACTCCC GAGCCCGGCG AGATCGTCGT GTTCATGTCT CACTTCCGTC
GAGGTTTAGG CTTCCCGACG GATCCCTTCA TGAGGGGGCT CATGTTTTAC
TATGGGCTGG AATTCCACGA CCTGGCTCCG GAGTCCATCC TCCATATCTC
ATCATTCATT GTCGTTTGTG AAGCCTTCCT CCGCATTACC CCTCACTTCG
GCTTATGGCT CAAAACCTTC AACGTGGAGC CGAAGATGAT TGAGGGGCGT
CAAGCAGAGT GCGGCGGGGC AAGACCCGCG GGTGCAGAAA TTGTAACATA
CGTGTCTGCT TAAGTGGGCG TCACGTAACT GGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG AGATTCTGAG AGACAGAGTG CGTGTGTGCG ACTCTACTCT
TCGGACATGT AC
Go back to index
wmc(10d8)
Plate reference : 10d8
WMC locus number : WMC Length of sequence : 480
Last updated : Jeu 27 Aož 1998 at 15:51
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : No trimming done to sequence at Agrogene, ends not located. Bases 245 to 480 show homology to 6g4 bases 26 to 261 (236 in longest run, maxScore = 152). (GA)10 298 to 317, (GT)12 274 to 297. Duplicate, 6g4 has precedence.
PCR Comments :
Length of sequence : 480 Consensus sequence is :
..
GGGGACAyCC GATAAsTGTT ykGTTGGGGG ArAAATTTTT GTdGAAnGyC
GGrnAhTAhC CmAAATTTTT TCACACACCv rGGGGAAAmA CmAsGChATA
kddGACCCAm ATGTrATTTA TACsGCCAAA AGGCCTTkTG CATTGCCCTT
GCAGGGTTCG ACCTTCTTAG rAGGrATTCC CCTTCGAAGG sCGCCGTTGr
AyCkkArsCa GcrTkGmCta AyagAtgCCG wTtgwcGTTr TGTAACATGA
GAGAATGGTC TTCTAGTTTA CTTGTGTGTG TGTGTGTGTG TGTGTGTGAG
AGAGAGAGAG AGAGAGAGGG AGGGAGGGAG AGAGAGGAGC ATCCATAACA
CAACAACCAT CTCTCTCGAT TCGGCCATCC CTCGCACGAT CGCATGCAAC
ATATGCATCA ACGCGCACAT TTTGACACCC TCACTCGGCC CCTACCCACC
TCAAGGCCCG CGCAATCTCT TCGTGAATAC
Go back to index
wmc(10e8)
Plate reference : 10e8
WMC locus number : WMC Length of sequence : 201
Last updated : Mer 30 DŽc 1998 at 15:39
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : Trimmed to Rsa1 at 5' end 3' end not located. Bases 16 to 31 show homology to 10d9.1 bases 21 to 36 (16 in longest run, maxScore = 32). (CA)11 156 to 177. Too difficult to make primers. NB this is a duplicate of 10d9.1, primers are made from 10d9.1 Bases 9 to 103 show homology to 25c8 bases 17 to 111 (95 in longest run, maxScore = 88). Duplicate with 25c8, 10e8 has priority.
PCR Comments :
Length of sequence : 201 Consensus sequence is :
..
GTACTACCTG GAGAGAGGTA AGGTGACTaA GGCTGCATTA TTTCTGCACC
ACTGTGGATA GTCTTACCAC CAAAGCCACA TGACACGATT ATGATTGAAA
TCCCAATGAC CCC....... .......... .......... ..........
.CasACACAC ACACACACAC ACACACAAAA CA.CGACATG CTTGTCTAGT
C
Go back to index
wmc(10f8)
Plate reference : 10f8
WMC locus number : WMC Length of sequence : 338
Last updated : Lun 30 oct 2000 at 16:59
Owner : Jacquemin, Gembloux Date at Agrogene : 18.6.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 196 to 219 (complement) show homology to 3e4 bases 881 to 904 (24 in longest run, maxScore = 81). (TTC)13 3 to 41, (TTC)33 60 to 158, (TCTCCCT)5 164 to 188, (TTC)8 204 to 227, (CTT)7 242 to 262. No room for primer. Bases 112 to 128 show homology to 10a6.1 bases 459 to 475 (17 in longest run, maxScore = 26). Bases 80 to 141 show homology to TW4b03 bases 78 to 139 (complement) (62 in longest run, maxScore = 60). Bases 125 to 159 show homology to TW4f03.1 bases 159 to 193 (complement) (35 in longest run, maxScore = 150). Bases 109 to 128 show homology to TW7f06.2 bases 27 to 46 (20 in longest run, maxScore = 53). Bases 106 to 152 show homology to TW7c12.1 bases 155 to 201 (47 in longest run, maxScore = 46).
PCR Comments :
Length of sequence : 338 Consensus sequence is :
..
TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTGCTTCTTm
TGCTTCTTAT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT
CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT
TCTTCTTCTC CCTTCTCCCT TCTCCCTTCT CCCTTCTCCC TTCTCCCTTC
TCCTTCTTCT TCTTCTTCTT CTTCTTCTCC TTCTCCTTCT CCTTCTTCTT
CTTCTTCTTC TTCTCCTTCT CCTTCTTCTG CTTCTTCTTC TTCTCCTCCT
TCTTCTTCTT TTTCTTCTTC TCCTTCTTCT CCTTCTTC
Go back to index