Wheat microsatellite WMC 25/06/01
wmc(22h3)
Plate reference : 22h3
WMC locus number : WMC Length of sequence : 244
Last updated : Mer 10 F思 1999 at 11:51
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Ssp1 at 3' end. Bases 150 to 186 (complement) show homology to 24f9 bases 46 to 82 (37 in longest run, maxScore = 42). (CA)5 9 to 18, (CA)6 49 to 60, (CA)5 64 to 73, (CA)8 29 to 44, (CA)6 147 to 158. No room for primers.
PCR Comments :
Length of sequence : 244 Consensus sequence is :
..
GCACACTACA CACACACACG TACACAGACA CACACACACA CACATGTACA
CACACACACA CTACACACAC ACAGGCACAC AGACACACAC AAACACACAC
ACACTACACA TACACTACAC ATGTACACAC ATATACACAC ACACTACACA
CACACACATA TTTTTTTACT TATTTTCTGT TTAATNTTCA AATGTTTAGT
TGAATTAGAA CTATCTTGTT TATTTTTAGA ATGTTAGAAA TATT
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wmc(22a4)
Plate reference : 22a4
WMC locus number : WMC Length of sequence : 155
Last updated : Mer 10 F思 1999 at 11:53
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Ssp1 at 3' end. (CA)4 1 to 8, (CA)23 15 to 60. No room for primers.
PCR Comments :
Length of sequence : 155 Consensus sequence is :
..
CACACACACC CACCCACACA CACACACACA CACACACACA CACACACACA
CACACACACA TACTGTTGTG CTGTTTTTGA AGGTGACAGA ATAATTGGCA
ATTAAAAAAC AAAGTTGCTT TTTGTGCATT TGATATCCGT GTCAGAATAA
ATATT
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wmc(22b4)
Plate reference : 22b4
WMC locus number : WMC Length of sequence : 147
Last updated : Mer 10 F思 1999 at 11:54
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 43 to 68 show homology to 11h6 bases 292 to 317 (26 in longest run, maxScore = 57). (CA)7 134 to 147. No room for primers.
PCR Comments :
Length of sequence : 147 Consensus sequence is :
..
GGAGCTAGTG TGGTGATTAT GCACACAGGC ACGCATGCAC ACGAACTGCA
TGCACGCAAC ACTCACATGA ACACATGCAG CCACGCACGC ACACAACACT
CACATGTACA CACGCAGCCA CGCACGCAAC ACTCACACAC ACACACA
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wmc(22c4)
Plate reference : 22c4
WMC locus number : WMC Length of sequence : 276
Last updated : Mer 10 F思 1999 at 14:35
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Ssp1 at 3' end. Bases 200 to 237 (complement) show homology to 11h6 bases 190 to 227 (38 in longest run, maxScore = 60). (GT)6 82 to 93, (GT)10 145 to 164. Too difficult to make primers.
PCR Comments :
Length of sequence : 276 Consensus sequence is :
..
GTCGTGTGGT GTAGTGGTGT GTGCATGCAT GTGTGCGTGC GTGCGTGTGA
GTGTTTCATG CGTGCGCGGC TGCGTGTGTA CGTGTGTGTG TGTTGCGTGC
GTGCGTGGTT GCATGTGTTG CGTGGATGCA GTTCGTGTGC ATGCGTGTGT
GTGTGTGTGT GTGTATAATC ACCACACCAG CTCATGTGTG TTAAAACAGA
CGGCTCAGCA TACCAATACA AGGCCACCTT GTCCGCTATG CCCGCGGTCA
TGACTTCGAA CCACCATCCA AATATT
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wmc(22d4)
Plate reference : 22d4
WMC locus number : WMC Length of sequence : 32
Last updated : Mer 3 F思 1999 at 14:58
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Very small insert No substantial microsatellite.
PCR Comments :
Length of sequence : 32 Consensus sequence is :
..
AATATTGATT CTGTGTGTGT GGCTGAGAGA GA
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wmc(22e4)
Plate reference : 22e4
WMC locus number : WMC Length of sequence : 595
Last updated : Mer 10 F思 1999 at 14:38
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Ssp1 at 3' end. Bases 62 to 111 (complement) show homology to 5g3 bases 330 to 379 (50 in longest run, maxScore = 265). (GT)15 1 to 30. Near duplicate, 5g3 has precedence.
PCR Comments :
Length of sequence : 595 Consensus sequence is :
..
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TTAACACCAT GCGTGTGTTA
GAGAGAGCGA TAGATCGACC TACTCCTACA GAGAGATGTT GTGTAGTGTA
TGATTTTAGC CACGAGAGTC GGTGCATCCT CTCGTTTCCG GGCGTGTCCG
GTAGGGACAT GCGGACAGTT GTCATGCCCA CTCCTGACTA GCCTGGCCCA
CCCAAAGCCC CTCCATCGCC CGCGCGCGCT TCCCGCCCGA AACGGTTAGT
GCCGCTCCAA AGAATCGGTG CCGCATTCAT TCCCGGGCAG AGCGGGCGCG
ACCTCTCACT GGCGCAAGAG TGATGGTTGC TTCATCCGTC CAACTTACTG
CTGGGTCTAT GTGATTTGAC GGCTCATTGG TCTTTATTAC TGAGGTGGTA
GGACTGCTCG ATGTCCCACG CTTTCGGCGA AAGGAGGTAT ACTACAACTA
CTAGATTACA ATTTTCTCCA TTCTTATAGC AGAGGCATGC AAGAGCAGTG
AAAACATGTA GGCTCAGTGA TTACATGGCC CACCTCACAC TATCACCGTG
CGACAGCTAA CTCTTTACAT AGTACTCCCT CCGTTCCTAA ATATT
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wmc(22f4)
Plate reference : 22f4
WMC locus number : WMC Length of sequence : 324
Last updated : Mer 10 F思 1999 at 14:58
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends (NB 5' linker corrupted). Bases 247 to 294 show homology to 20h12 bases 295 to 342 (48 in longest run, maxScore = 76). (CA)4 49 to 56, (CA)6 80 to 91, (CA)4 251 to 258. Too difficult to make primers.
PCR Comments :
Length of sequence : 324 Consensus sequence is :
..
TGCACCTATA TGGGCGTGCA CACACACGCA GCAGCACACA TGCACACGCA
CACACACGCA TCAACACACA CGCACGCAGC ACACACACAC ATACACACAC
ACGCAGTAGC AGCAGCACAC ACGCAGGCAG CACATAGGCA CGCAACAACA
CACACACGCG CGCGCACACA CGTACACACG CAGTAGCAAA CACACGTGCA
GCAGTACACC TGTGCGCGTG CACCCACACA CGCAACAGCA CACACGCGCG
CACACACATA CCGCATGAGG GGCAAAATCG TCTTTTCAGG TGTCGTTTAG
GCTCAAAATG AACGGAAGTG TCGT
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wmc(22g4)
Plate reference : 22g4
WMC locus number : WMC Length of sequence : 6
Last updated : Mer 3 F思 1999 at 14:58
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : 22G4 culture didn't grow after plating out
PCR Comments :
No sequence available for this clone
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wmc(22h4)
Plate reference : 22h4
WMC locus number : WMC Length of sequence : 6
Last updated : Mer 3 F思 1999 at 14:58
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : 22H4 culture didn't grow after plating out
PCR Comments :
No sequence available for this clone
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wmc520(22a5)
Plate reference : 22a5
WMC locus number : WMC520 Length of sequence : 481
Last updated : Mer 10 F思 1999 at 15:28
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 137 to 174 (complement) show homology to 25e4.1 bases 245 to 282 (38 in longest run, maxScore = 114). (CA)7 308 to 321, (CA)15 356 to 385, (CA)9 388 to 405, (CA)6 412 to 423. Forward primer has 2 mismatches to 25e4.1, reverse primer apparently outside region of homology.
PCR Comments : 61C anneal, smear.
Forward primer details :
AggcccAcAcAATcTcTTcg at 242 length 20 bases, Tm 64
Reverse primer details :
TggggATgAATTgTgTgcTc at 431 length 20 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 209 bases.
Length of sequence : 481 Consensus sequence is :
..
ACAGACATAG AGAGGTGTGA ATGTGCAAAT GATCATGCAT GAGTGAGACA
TAGACAGATG CCAATACGTT GTGTATACAT GAGAGAACGG TCTTCTAGTT
TACTTGTGTG TGTGAGAGAG AGAGGAGCAT CCATAACACA ACAACCATCT
CTCTCGATTC GTCCGTCCCT CGCATGATCG CATGCAACAC ATGCATCAAC
GCGCACATTT TGACACCCTC ACCCGGCCCC TGCCCACCTC AAGGCCCACA
CAATCTCTTC GTGAATACCC ATTTCTGTCC TTAGGTTTGT TTTCTCTCAA
TATATGACAC ACACACACAC ACCCACCCCC CCACACACAC GCAGCACAAC
ACACGCACAC ACACACACAC ACACACACAC ACACAAACAC ACACACACAC
ACACAGCACA ACACACACAC ACACTCCCTC GAGCACACAA TTCATCCCCA
TCCAAGGTTA TACGACGACC ACTCTCGCTT G
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wmc(22b5)
Plate reference : 22b5
WMC locus number : WMC Length of sequence : 6
Last updated : Mer 3 F思 1999 at 14:58
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : 22B5 sequence failed
PCR Comments :
No sequence available for this clone
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wmc(22c5)
Plate reference : 22c5
WMC locus number : WMC Length of sequence : 519
Last updated : Lun 5 juil 1999 at 17:22
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 355 to 423 (complement) show homology to 11h6 bases 73 to 141 (69 in longest run, maxScore = 116). Bases 33 to 103 show homology to 26a4 bases 140 to 210 (complement) (71 in longest run, maxScore = 123). No substantial microsatellite. Bases 356 to 396 show homology to 10c4 bases 100 to 140 (complement) (41 in longest run, maxScore = 87).
PCR Comments :
Length of sequence : 519 Consensus sequence is :
..
GTCTGTTAGG GCCTGATGTG TGCGCATGCA CGTGTAGGTT GAGCACTTGA
GCGTGAGAGT GTGTGTTGGT CGTGTGGTGT ACTGGTGTGT GCATGCATGC
GTGTGTGTGT GCGTGTGAGT GTTGTGTGCG TGCGTGGCTG CGTGTGTACG
TGTGAGTGTT GCGTGCGTGC GTGGGTGCAT GTGTTTATGT GAGTGTTGCG
TGGATGCAGC TTGTGTGCAT GCGTGCGTGT GTGTATAATC ACCACACCAG
CTCCTGTGTG TTAAAACGGA CGGCTCAGCA TACCAATACA AGGCCACCTT
GTCCGCTGTG CCCGCGGTCA TGACTTCGAA CCACCGTCCA AATATTTTTT
TGTTGTTTGT TTTCATTCTT ACTAGCAAGA TGCCCGTGCG TTGCACGTAA
CATCAAGATG CATTTGTATG ACTTGTTTAT CTTGTGAGAG AAAAGGATGA
ACGAGGGAAT GCCTTATTTG CAAATGTGGA GAGGTGTGTG GGTACCTTTT
TGCAAAATTG CCATAGTTT
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wmc(22d5)
Plate reference : 22d5
WMC locus number : WMC Length of sequence : 220
Last updated : Mer 10 F思 1999 at 15:38
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end, 3' end not located. Bases 48 to 84 show homology to 7b4 bases 183 to 219 (37 in longest run, maxScore = 60). (CT)5 9 to 18, (CT)8 43 to 58, (CT)10 87 to 106. No room for primers.
PCR Comments :
Length of sequence : 220 Consensus sequence is :
..
CTCTCCATCT CTCTCTCTCC CTCTCTCTTT CTCTCCATCT ATCTCTCTCT
CTCTCTCTCC CTCTCTCTTT CTCTCCATCT CTCTATCTCT CTCTCTCTCT
CTCTCTCCCT CTCTCTCCCT CCCTCCCTCT CTCTCTCTCA CCGACAATCT
TCAATTCTGT CGCACGTATC CAACACAAAA TTCTTGTTGG TCCCTCTCCC
TTTCTCTCCA TGACTCTCTC
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wmc(22e5.1)
Plate reference : 22e5.1
WMC locus number : WMC Length of sequence : 1810
Last updated : Mer 10 F思 1999 at 15:39
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : No overlap between forward and reverse sequences. Trimmed to Ssp1 at 3' end, 5' end not located. This is the forward sequence. Bases 571 to 595 show homology to 22a3.1 bases 436 to 460 (25 in longest run, maxScore = 29). (CA)21 50 to 91. Too difficult to make primers.
PCR Comments :
Length of sequence : 1810 Consensus sequence is :
..
GNNAGAGNNN GNNNNNNNTN NNNTTGAATC CCTTTANCTC NNNCGCGTGC
ACACACACAC ACACACACAC ACACACACAC ACACACACAC ANACANNNAC
ACACNNACAC ATNGNCATNG GCGCCATGTG GGATNCTCTA CACGCCTCTG
GGATCNNCTA GAGTTGGACG CTGTCAGCGG TGCATAGCCT TGGNTGCTGT
CATGGNACAT AGTATGCGTC TCTGNGTGAA ANNGATNTTN NGNCACAGTA
TCGCACTCAA GCAGTACGAG CCTGGAAGGN CTATAAGTGN TAAGAGCCTA
GCGTGTAGCN TAATGAGTGA GCTCTCTCAT GATTAGCTTG CNATGCGCTN
AATGCTGCGC TNTCCAGTTG CATAAATNNG TCGTGCCACG TGCATTAGAT
GAATCGGGCT CAGCGCATCG GGGCAGANGT TNNGCTGCNT ATTGTNNCTN
TCTTNCTNTT CNTNGCTCAC TGACTNGCTG CGACTCGGTT GATCTCATGC
AGAGAGCGGT ATANGCGTTA NTCACAGGCN GNAATACATG ATATACACAA
ANANCATGGG ATCACGCAGG GAAAGAACAT GTGAGCAAAA GGCCAAAGGA
AGGCCAGNAA CCGTNGAAAG GTNGGGTNGC TGGCCGNTNA TNNATATGAT
NCNANNCNNT GATAACATCA CAAGNNNTCA AAAGCTCANN TGACAAGTGN
GGNAAACNCG ANAGGACTNT TGAGATACCN CTCGTTNGCT CTTGAAANCT
CACTCTGCGC TTTCCTGGTT CNACACTGGC NTTTTCCGTT NANCTAACCG
GNTTTTTCNT NTAGGNAACG TCGGGCTTTT TNATAANTTA ACGCTTGGAG
GTTTNTNACA AGGTGGNATG NANTGCCCCT ACAACCTGNG CTTGGTGGAC
GAATCGGCCT TTTAAGGCCA ANANTGGGTC GNTTTCCGNC AACTTTGACC
TGATTNGAAC CCTGGGAANA TNN
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wmc521(22e5.2)
Plate reference : 22e5.2
WMC locus number : WMC521 Length of sequence : 837
Last updated : Mar 30 mai 2000 at 9:54
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : No overlap between forward and reverse sequences. Trimmed to Ssp1 at 3' end, 5' end not located. This is the reverse sequence. Bases 110 to 118 show homology to 22a3.2 bases 164 to 172 (9 in longest run, maxScore = 57). (CA)20 772 to 811. Bases 34 to 42 show homology to TW3a07 bases 318 to 326 (9 in longest run, maxScore = 20).
PCR Comments : tested 51C anneal, no product.
Forward primer details :
TccccgTcAATgggTTTTT at 718 length 19 bases, Tm 64
Reverse primer details :
TATTTgAcATcTcAAcAATgAcTTT at 811 length 25 bases, Tm 58
Expected size of amplified fragment (Chinese Spring=) 116 bases.
Length of sequence : 837 Consensus sequence is :
..
NATTAAGGGG GGGCCATTTA TCTCAGGGGG TGGTTTTTTT TGATCAAGCG
GTTTTTTTTT AATTAACCAA GGGGTTCTGG GTTACCCAAA AAATGGGTTA
AAAAGCCCCC AAAAAAGGTT ATAAAGGTCA CCCTGTAAAT TTTTTAAAAA
CTCATAATTT CCCTTTTTTA CGGATATTTT TTTCCTTAGC CCAGGGATAT
TTTTTCCTGT TTAGATAAAT ATCTAATATT GGTACAGGGA TCATTTCCCA
GAGAAGGGCC GGCACATTTT TTAAAAAAGG GGCAATTTCC GTCCATGAAC
CCATAATATT GGGGCATCTC GCAGATTCAT TTTTGTGTAA CGCGGGGCCC
ATTCGTTTTT CCCCTTTTGA TACAGACAGT TTCAGCATAT GATACAAGCC
CGTCTTTAAG AGGGTGTCAG GAACCCTGTA AACGGGGAAA GGGAGGAAAC
CAGTGTGGCA GGGGGTGTTA GTGGGTTTTT TTTTGTGTCC TTAAAGCATA
TTGTATTCCG AGTGGGGGGG ATTTGGTGTG AGAGGGCGCC CTAAAGGGTG
TGAAAAAAAG CCCGCATGGG TAACCAGGGA AAAATGGGTT TGGGCCCATT
TTCCAAAAAG CGTGCGCCCC GGGGGTAAAG GGTTTTTTGG GAGGGCCTGG
GAGGGGTATT TTCAGCTGGG GAAATAAGTT TGTTATTCAA AGGGTTTTAG
CAGTGTTACC GGGGTGTTTT CCCCGTCAAT GGGTTTTTTA AGGGGGGGGA
GGGCAAACAC ACACCCCCCC CCACACACAC ACACACACAC ACACACACAC
ACACACACAC AAAGTCATTG TTGAGATGTC AAATATT
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wmc(22f5)
Plate reference : 22f5
WMC locus number : WMC Length of sequence : 183
Last updated : Jeu 11 F思 1999 at 15:06
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Ssp1 at 3' end. Bases 73 to 181 (complement) show homology to 25h4 bases 3 to 111 (109 in longest run, maxScore = 117). (CA)16 1 to 32. Duplicate, 25h4 has precedence.
PCR Comments :
Length of sequence : 183 Consensus sequence is :
..
CACACACACA CACACACACA CACACACACA CATATTGTGC CTCCAAAATC
ACTGAGTGTT CAAAGTAATT CAAAGTCTGT GTGCATGGCG AAGTACACAG
AACGTGTGCA CCTGCTAGTG CCACTTTCGC TAATTCTGGT CGTGTGCTTT
GTTGTTGATG CGCAATGTAA GTAGCACAAT ATT
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wmc(22g5)
Plate reference : 22g5
WMC locus number : WMC Length of sequence : 264
Last updated : Lun 8 F思 1999 at 10:23
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 72 to 127 show homology to 2h11 bases 185 to 240 (56 in longest run, maxScore = 55). (GT)4 23 to 30, (GT)6 45 to 56, (GT)6 60 to 71, (GA)9 72 to 89, (GA)8 131 to 146, (GA)8 209 to 224, (GT)8 193 to 208. Too difficult to make primers.
PCR Comments :
Length of sequence : 264 Consensus sequence is :
..
ACAAATGCTC CGCCTAGATC ATGTGTGTGT GAGATGGAGT CTTAGTGTGT
GTGTGTGCTG TGTGTGTGTG TGAGAGAGAG AGAGAGAGAG GAGAGAGAGA
GATGGAGTCT TAGTTTGTGT GTGTGTGTGT GAGAGAGAGA GAGAGAAATG
GAGTCTAAGT GTGTGGGGGG GCGTGCGTGT GTGTGTGTGT TTGTGTGTGT
GTGTGTGTGA GAGAGAGAGA GAGATGGAGT CTTAGTGTGT GGGGGGGTGC
GTTGTGTGTG CGTG
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wmc522(22h5)
Plate reference : 22h5
WMC locus number : WMC522 Length of sequence : 239
Last updated : Jeu 11 F思 1999 at 15:05
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. (CT)36 74 to 145, (TC)4 163 to 170.
PCR Comments : 61C anneal, polymorphic on acrylamide (180-200 bases).
Forward primer details :
AAAAATcTcAcgAgTcgggc at 5 length 20 bases, Tm 63
Reverse primer details :
cccgAgcAggAgcTAcAAAT at 178 length 20 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 193 bases.
Length of sequence : 239 Consensus sequence is :
..
CCTCAAAAAT CTCACGAGTC GGGCTGCTGC GTGAGCTGTT TCATGTTGCA
CCTCCGACAC CACGCACGTT CGCCTCTCTC TCTCTCTCTC TCTCTCTCTC
TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTTGCGA
AATACGTYCG CCTCTCTCTC ACATTGGATT TGTAGCTCCT GCTCGGGAGT
GCTCTTGCCC GTTGCGGTCA CCAGCCGGCG AGGCCCTGC
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wmc523(22a6)
Plate reference : 22a6
WMC locus number : WMC523 Length of sequence : 296
Last updated : Jeu 11 F思 1999 at 15:14
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 69 to 107 (complement) show homology to 8a12 bases 187 to 225 (39 in longest run, maxScore = 78). Reverse primer has 1 mismatch to 8a12, forward primer has no obvious match. (GT)13 147 to 172.
PCR Comments : 51C anneal, smear.
Forward primer details :
TgATcAgATgATcgTTTATgcT at 9 length 22 bases, Tm 59
Reverse primer details :
gATAATAAcAcAgAcggTTgcT at 218 length 22 bases, Tm 58
Expected size of amplified fragment (Chinese Spring=) 231 bases.
Length of sequence : 296 Consensus sequence is :
..
GTAGATGATG ATCAGATGAT CGTTTATGCT AGTTAATCAT GCATGTAGTA
TATAGTTTAC TTTATTGGTG TGTGGAAATG TCATGTGTGT AGTAGCCACC
TATGTAAGTG GATGTTTAAT TTGGTTATGC AAGCATGTCC TTATAAGTGT
GTGTGTGTGT GTGTGTGTGT GTTGTTCTGT ATGCAATCCC ATCGCACAAC
ACACACATCT TATTAGCAGC AACCGTCTGT GTTATTATCG GTCTTCACAC
ACATTTCTGA TTACAGACCT GTTTGCCGCG TATCACACAC ATCTTG
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wmc(22b6)
Plate reference : 22b6
WMC locus number : WMC Length of sequence : 305
Last updated : Mer 3 F思 1999 at 14:58
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. No substantial microsatellite.
PCR Comments :
Length of sequence : 305 Consensus sequence is :
..
GCTAAACTTC TACCTTGTGT CCTCTAGAAT CTGAACCAGA GGCAGCAATT
CTGTACAAGA CAGTTCGTCC CATCAATTAT GGAATTGGCG CAATCGGGTT
CGACATGGAT GGATCTGCAC AATATGGAGG TTGAAAGAAA GATCGAACCT
GCAGCGAGAA GGCGGCATGG GTAGTGGAGG ATCTCGCTGC GCGGGAGCCA
CCGCCGCCGC CGTAGTCTCA GGCCCACATC ATCATTGCCT CTCCTCAGCT
CCATTGGGAA AGTCGCCACC GCCGCTGCCG ATTTGGCACA TGATGAACAT
TTTTG
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wmc(22c6)
Plate reference : 22c6
WMC locus number : WMC Length of sequence : 295
Last updated : Jeu 11 F思 1999 at 15:16
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 50 to 98 show homology to 11b5 bases 140 to 188 (49 in longest run, maxScore = 21). (TTG)11 44 to 76, (TTG)12 131 to 166, (TTG)16 170 to 217, (TTG)25 221 to 295. No room for primers.
PCR Comments :
Length of sequence : 295 Consensus sequence is :
..
GTTTCACCTC TAGCCTACCC CAACTTGTTT GGGACTAAAG GCTTTGTTGT
TGTTGTTGTT GTTGTTGTTG TTGTTGGTGG TGGTGGTGGT GGTGGTGTCG
TCGTCGTCGT CGTCGTTGTT GTTGTTGATG TTGTTGTTGT TGTTGTTGTT
GTTGTTGTTG TTGTTGATGT TGTTGTTGTT GTTGTTGTTG TTGTTGTTGT
TGTTGTTGTT GTTGTTGCTG TTGTTGTTGT TGTTGTTGTT GTTGTTGTTG
TTGTTGTTGT TGTTGTTGTT GTTGTTGTTG TTGTTGTTGT TGTTG
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wmc(22d6)
Plate reference : 22d6
WMC locus number : WMC Length of sequence : 199
Last updated : Lun 8 F思 1999 at 10:07
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 87 to 129 (complement) show homology to 12c12.1 bases 149 to 191 (43 in longest run, maxScore = 100). No substantial microsatellite.
PCR Comments :
Length of sequence : 199 Consensus sequence is :
..
AATTGTTTGA TAAGTCTGTA CATTAAGAGA GAAAAACGCA AGTTCGTTCA
AACCATATCT TTCATTCATT CACATTGCGA ATTTACATTC ATATGATCGA
GAATTCGAGA TACAGTATTA AACCCCCAAC AAACTATATC CGGCGGCGGC
GGAGGCGGCG TGCCGCGCCA TCGTTGTTGT TGTCGTCCTC TGGGACGCC
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wmc(22e6)
Plate reference : 22e6
WMC locus number : WMC Length of sequence : 233
Last updated : Jeu 11 F思 1999 at 15:21
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. (GT)22 1 to 44. No room for primers.
PCR Comments :
Length of sequence : 233 Consensus sequence is :
..
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTCTTAGT
TTACGCCAGC CATCAACCTT GCTTTGGAAG GAAGTTTTGA GAAAGCAAAA
AAGAAGGTAA ATTTTCATTA CAAATACTTA TGATAACTAA ATTATGTAGG
AATTACAAAT ACACATAAAA ACAATCTTTG TAGAACTCTT GCAACCGGCT
AGAATTTTGA TTGGCATAAT ACTCTCATGC TCC
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wmc524(22f6)
Plate reference : 22f6
WMC locus number : WMC524 Length of sequence : 478
Last updated : Jeu 11 F思 1999 at 15:34
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 204 to 215 (complement) show homology to 3e11 bases 124 to 135 (12 in longest run, maxScore = 19). (GT)13 233 to 258, (GT)7 261 to 274, (GT)4 316 to 323.
PCR Comments : 61C anneal, polymorphic on acrylamide (160-200 bases).
Forward primer details :
TAgTccAccggAcggAAAgTAT at 165 length 22 bases, Tm 63
Reverse primer details :
gTAccAccgATTgATgcTTgAg at 341 length 22 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 198 bases.
Length of sequence : 478 Consensus sequence is :
..
GGACACCCAA TGAAACTGGC CCTATGCTTA TGGCCTTCAA AACTTATTTC
ATAAAGTGGA TGTACTGGAC GTGGGTGTAG AACGTGTGGA TGTAACGGAC
ATGACCGTAT TTGTTGGTGC AGCCAAACTG AGTGCACCAC TCCGCTAGGG
ACATATCGAA GCTTTAGTCC ACCGGACGGA AAGTATCCGT GTGCGTGTGT
GCATGCGTGC GTGTGCGTGT GTGGGTGCGT GCGTGTGTGT GTGTGTGTGT
GTGTGTGTTT GTGTGTGTGT GTGTGGTGTG TGTGTGCGCG TGTGCGTGTG
CGTGTGCGTG TGCGCGTGTG TGTGAAGATG TTCTCAAAAA CTCAAGCATC
AATCGGTGGT ACATTTTTGT GTCTTGAAAG ACAAAGTGAT GCAAACCAAC
ATTAACATAT AACAAATTGA AATCATTACA ACATCAACAA TTAAGTGCTC
AACAGGTAAA ACGGTTCAAA ACGAGTAC
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wmc525(22g6)
Plate reference : 22g6
WMC locus number : WMC525 Length of sequence : 373
Last updated : Jeu 11 F思 1999 at 15:40
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 51 to 63 show homology to 25c11 bases 41 to 53 (13 in longest run, maxScore = 22). (GT)13 273 to 298, (GT)20 301 to 340.
PCR Comments : 61C anneal, polymorphic on acrylamide (200-220 bases - stuttery).
Forward primer details :
gTTTgAcgTgTTTgcTgcTTAc at 168 length 22 bases, Tm 62
Reverse primer details :
cTAcggATAATgATTgcTggcT at 352 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 206 bases.
Length of sequence : 373 Consensus sequence is :
..
GTAGGGTTTT ATCTCTAAGA AGAGCCCGAA CCTGAGTAAA AACCCGTGCC
CCTGTTACCA TCGTATTAAG ACTACTAGCT CAGGACCTCT TAACCGAGAT
CTGCCCGATT TTACTCTGTC CGTAATAATT TCAGAAAAAC TATTGCATAA
GTACATTTTC AATTATTGTT TGACGTGTTT GCTGCTTACA TTTATGCATG
GGTTTGAGTT TTCCATGTGA TGTATATCTA CCATGAGATT TTCGTCTTTC
GTAAACTACA TTTCTGCCAA TGGTGTGTGT GTGTGTGTGT GTGTGTGTAT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GAATTTTACC
TAGCCAGCAA TCATTATCCG TAG
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wmc(22h6)
Plate reference : 22h6
WMC locus number : WMC Length of sequence : 345
Last updated : Lun 8 F思 1999 at 10:28
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 120 to 169 show homology to 20A7 bases 189 to 238 (50 in longest run, maxScore = 121). (GA)10 277 to 296, (GT)14 223 to 250. No room for primers.
PCR Comments :
Length of sequence : 345 Consensus sequence is :
..
TCAGACGGTC TATATTACAA GATGGCAGGC ACACCATCAT CGCCAACTCG
GTTCTTTATA AGGGTACAGA TGATAAATTT GCTAACTACT AAAGTGAAGT
GGAATTTGTC CATGTTATCC AAGTAAATTA AGGTGATTGT TTATCATACG
GGTAAGGTTG GATGAAGGGG TGGTAGGAAC AAATGCTCCG CCTAGAGCAT
GTGTGTGTGA GATGGAGTCT TAGTGTGTGT GTGTGTGTGT GTGTGTGTGT
TTGTGTGTGT GTGTGTGGGT GTGTGTGAGA GAGAGAGAGA GAGAGATGGA
GTCTTTGTGT GTGTGTGTGC GTGTGTGTGG TGGAGTCTTA GTGTG
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wmc526(24A10)
Plate reference : 24A10
WMC locus number : WMC526 Length of sequence : 355
Last updated : Ven 12 F思 1999 at 11:02
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end, 3' end not located. Bases 81 to 161 (complement) show homology to 25e7 bases 114 to 194 (81 in longest run, maxScore = 119). Reverse primer completely homologous to 25e7, forward primer is not in 25e7 sequence. Bases 235 to 352 show homology to 26a1 bases 82 to 199 (complement) (118 in longest run, maxScore = 193). (CA)33 79 to 144. Duplicate with 26a1, 24a10 has priority.
PCR Comments : 61C anneal, polymorphic on acrylamide (150-190).
Forward primer details :
TcccATTggTTcAcAAAcTcg at 58 length 21 bases, Tm 65
Reverse primer details :
gATggTATcgcATTcATcggT at 225 length 21 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 188 bases.
Length of sequence : 355 Consensus sequence is :
..
GTCCTCTCTT GTGATTCTCT CTCAAAAGTA GTGAGAGAGC ACCTCATGTT
GGGTTTGTCC CATTGGTTCA CAAACTCGCA CACACACACA CACACACACA
CACACACACA CACACACACA CACACACACA CACACACACA CACATTGGTA
GTAGTCGACA TCACACGAGC CGTCCTAGTG TCCCACGTGG AGGTGAAAAA
AATGCAGTTT TTGCTTGGAA ACGCACCGAT GAATGCGATA CCATCCAAAG
CAATCACCTT TGGAATTCTT CACTTTATCT CGTCGGATAC CATCAATCGC
CTCGAAATGC AATGCATGTA AAGGAAACGG ACATCACGAT GTGGCACGGT
AGTCC
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wmc527(24B10)
Plate reference : 24B10
WMC locus number : WMC527 Length of sequence : 497
Last updated : Jeu 11 F思 1999 at 15:59
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Ssp1 at 3' end. (CA)15 328 to 357, (GA)20 30 to 69.
PCR Comments : 61C anneal, product (360 bases).
Forward primer details :
AcccAAgATTggTTgcAgAA at 4 length 20 bases, Tm 63
Reverse primer details :
gcTAcAgAAAAccggAgccTAT at 366 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 386 bases.
Length of sequence : 497 Consensus sequence is :
..
GCAACCCAAG ATTGGTTGCA GAATAAAAGG AGAGAGAGAG AGAGAGAGAG
AGAGAGAGAG AGAGAGAGAG CAGGGGAAGA GCAGAGTAGA GAAGAGGGGA
GAGGGAGACG GGATTGGAGT GGGCAGGGGA GGAAGGTCAG GTGTGGGAGG
GCAAGTCAAG TCAACCCGAG GGTGGCGAGG GCGACGGCGA GGGGCGAGGG
CGACGGGAGC GAGACAGACT GCGGAATGGT CCGTGGAATG GAATTCGGAA
CGGATGCCGT GACGCCGGGG TCTCTCTCCC TGTGTTCCTT TCCTTCACTC
TATGCCGCTC CGTTCTGACG GGAGAAACAC ACACACACAC ACACACACAC
ACACACAGAG ATACAATAGG CTCCGGTTTT CTGTAGCCCT GTGGAAAACG
GAGGAAGAAG GGCGAGCTTT CGCACTGGAC TGACCGGCTT CCGCTGACCG
CCTGGCCGTG ACCTCACATG GACACGAATC ATGTTCTTAC TAATATT
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wmc528(24C10)
Plate reference : 24C10
WMC locus number : WMC528 Length of sequence : 350
Last updated : Jeu 11 F思 1999 at 18:08
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end , 3' end not located. Bases 92 to 148 show homology to 10A1.2 bases 90 to 146 (57 in longest run, maxScore = 66). Reverse primer perfect match to 10a1.2, forward primer no match. (GT)5GC(GT)5 32 to 53, (GT)4 70 to 77.
PCR Comments : 51C anneal, smear.
Forward primer details :
AAgATATTccTATTcTATgAAccT at 8 length 24 bases, Tm 54
Reverse primer details :
TcATAcAcTAcAcAccATcTcT at 111 length 22 bases, Tm 54
Expected size of amplified fragment (Chinese Spring=) 125 bases.
Length of sequence : 350 Consensus sequence is :
..
CACTCGCAAG ATATTCCTAT TCTATGAACC TGTGTGTGTG TGCGTGTGTG
TGTGCGTGTT TAACAGCATG TGTGTGTTAG AGAGAGTGAT ACATCGACCT
ACTCCTACAG AGAGATGGTG TGTAGTGTAT GATTTAGCCG CGAGAGTCAG
TGCATCCTCT CGTTTTCGGG CGTTCAGTCA GGACAGGCGG ACAACTGCCA
CGCCCCCTCC TGGCTAGCCT GGTGTCGATG ACATGAACCT AGGGTAGGGT
AATGGGCCTG ACCTAGACGC CCTTCCCAAG GACACTACCC AAAGATCAGC
TTCATTCAAA GCACAGTAAT TTCCACCAAC TGGAATCACC TCAGAGTGCA
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wmc(24D10)
Plate reference : 24D10
WMC locus number : WMC Length of sequence : 229
Last updated : Jeu 11 F思 1999 at 18:09
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to Ssp1 at 5' end and to insert at 3' end. Bases 3 to 35 (complement) show homology to 20d3 bases 327 to 359 (33 in longest run, maxScore = 57). (TTG)6 107 to 124, (TTG)10 191 to 220. No room for primers.
PCR Comments :
Length of sequence : 229 Consensus sequence is :
..
AATATTGATG ATATGGGTAG TACAAGAGTA GATCTACCGC GAGATCGGAG
AGGCTAAACC CTAGAAGCTA GCCTATAGTA TGATTGTTGT CCTGTATGTT
GTCCTGTTGT TGTTGTTGTT GTTGTTATTG GTGGTGGTGG TGTTGGTGTT
GTTGTTGTTG TTGGTGGTGG TGGTGTTGTT GTTGTTGTTA TTGTTGTTGT
TGTTGTTGTT GTTGTTGTTG WTGTTGTTG
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wmc(24E10)
Plate reference : 24E10
WMC locus number : WMC Length of sequence : 360
Last updated : Lun 8 F思 1999 at 10:07
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 54 to 83 show homology to 9e3 bases 140 to 169 (30 in longest run, maxScore = 97). Bases 224 to 257 show homology to 26a2 bases 59 to 92 (complement) (34 in longest run, maxScore = 97). No substantial microsatellite.
PCR Comments :
Length of sequence : 360 Consensus sequence is :
..
GAACCCTAAT GCGGATCTAT TCTATGGAGT GGCAAGGGCT TACGGGTGCT
GGAGAGTTGC GGAGGTCGCC GCCGTTTCTC TGGTCGCGTC AGGTTGATGC
AGCGGCCTGA GTTGGGGAAG ACAAGGAGAC CCGCGGCGGC GGCGGCGGTG
GAGCTCGAGC GGCAGTACAG TGGCGAGAGG AGGAAGACGA TGGAGGCGAC
AAGTAACTGG AGCCTCATGG GCTGGGCTAT TTATAAGGTG AGGCTCATAA
GTGGGCGTGA GAAACGAGGA GGTCACGACG TGATTATCTC ACCCCAAAAA
CGCCTCGATT TTTTGGATGT GACCAACTAC GCAGGTAATC TCCAGTTCTT
CACTGACGTG
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wmc529(24F10)
Plate reference : 24F10
WMC locus number : WMC529 Length of sequence : 195
Last updated : Jeu 11 F思 1999 at 18:19
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to Ssp1 at 5' end and to insert at 3' end. (CA)13 95 to 120.
PCR Comments :
Forward primer details :
ATTgcATgcAAATTAgTAgTAg at 7 length 22 bases, Tm 53
Reverse primer details :
gTgTTgAcAAATTTTgAgTTAg at 171 length 22 bases, Tm 54
Expected size of amplified fragment (Chinese Spring=) 180 bases.
Length of sequence : 195 Consensus sequence is :
..
AATATTATTG CATGCAAATT AGTAGTAGCT AGCTAGTAAT AAAAAAACAA
GGTGAAGCAT TCGCTACAAT AAGCACTCAT CCCCCCCCCC CCAACACACA
CACACACACA CACACACACA AAGGATGATA TAATCACAAT GGTTCAAATG
GTTTTGCATG ATTCAACCAA CTAACTCAAA ATTTGTCAAC ACATG
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wmc(24G10)
Plate reference : 24G10
WMC locus number : WMC Length of sequence : 1091
Last updated : Jeu 11 F思 1999 at 18:21
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : Trimmed to insert at 5' end, 3' end not located Bases 8 to 52 (complement) show homology to 13f3 bases 127 to 171 (45 in longest run, maxScore = 24). (GA)10 32 to 51. Too difficult to make primers (lots of Ns).
PCR Comments :
Length of sequence : 1091 Consensus sequence is :
..
GATGCGAGCG ATAGAATTGA AGATTGTCGG CGAGAGAGAG AGAGAGAGAG
AGNNCTTNCG NNTTNGGNNT GAGATAANCA CCNCNAGANN NCCTANNTNC
ANGCCCACTT ATTACCTTCC TTANNNNTNN TCNAACCCNA TGANGCTNCA
NNTACTNGNC CANTCCATNG NCTTNCTCCT CTGNCCNNCT GTACTGTNCG
ATNNNANCTA CANCNNCNCN CNNNCGNGGG TCTCNATNNN TTNCCCAACT
TAGGCGCGNT GNATCACCTT ACNCGACCAN NGAAACNGNN CGNGANCTTC
NCAACTCTNC AANACCCTGT AANCCCTTGN CANTANANTA TANTNCNAAC
CCGCATNANG GTTCNTANNC CANNTNCCTC GTGGAANATN NNNAGANCAG
NCNNNNTNCN ACGTCTNCAC TGATNANAAC NCCCTGGACN NNTTCNATCT
TTACTCNTCC TTNNNNANCN CCNTNNNCNC TTTTTNCANG ANCCTTNGNN
NTNNTNTAAC NCNGNCATAA GAGANCNNGC TCCCNTNTCG ACNCCTTTNT
NANNANNNTN CCGNANNGCT NGNANATGGC TGANAATGTN GNNNNCNCNT
NGNATGTCNA NANCATATAA TTCNTACGCT TACACNTCAT TCNTCNTNNT
CANGTNTATT TNTCATCATC CTGTCACATC NCNTTTGANN GNCTANNTCT
NATNNNCNGA NATCANNANC NTGNNNTCNT NNATAAGTAC CNNNANTATN
CATATTNANT ANNACAGTAC GCCCCTCGTN TANGATNTAG NTGNAGTCTA
CTCACCNCTN TTNATANACN ANCANNTCTN GATATANGCG CTCTNATGTA
NAGANNGACT TTNNATNNAG TCGCAATCNC CNTTCTTTNN AANNGNGGAC
TCANNGGACT NTANNNNATA CACGATGNNN ATCGCGTCNG TATGNTCTAT
CTNACTANNG NNAGNATTAN GTNTNTNTCN NATNGNTNNA CGNNCGNNNN
ATATATANAT AGTTANANCT CCTCTCNCNC TACTATCCAC NNANGTGGGG
NTACNTANAN CTCTCTTNAC TGANCNCNAC AGNTCTNNNN N
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wmc(24H10)
Plate reference : 24H10
WMC locus number : WMC Length of sequence : 6
Last updated : Mer 3 F思 1999 at 14:58
Owner : Bright, Zeneca Date at Agrogene : 24.12.98 Public Domain : Yes
Comments : 24H10 sequence failed
PCR Comments :
No sequence available for this clone
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wmc(26a1)
Plate reference : 26a1
WMC locus number : WMC Length of sequence : 506
Last updated : Lun 5 juil 1999 at 17:23
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Ssp1 at 3' end. Bases 82 to 199 (complement) show homology to 24A10 bases 235 to 352 (118 in longest run, maxScore = 193). (GT)51 291 to 392. Duplicate, 24a10 has precedence. Bases 395 to 506 show homology to 26h9 bases 57 to 168 (112 in longest run, maxScore = 83).
PCR Comments :
Length of sequence : 506 Consensus sequence is :
..
CCTACCCAAA CCATAAGAAA GCCCTACACC TGAATCTTAG AACGCATGTT
ATTAACACTG CTGCACCTGT TCTTGTACAC CCTACCGTGC CACATCGTGA
TGTCCGTTTC CTTTACATGC ATTGCATTTC GAGGCGATTG ATGGTATCCG
ACGAGATAAA GTGAAGAATT CCAAAGGTGA TTGCTTTGGA TGGTATCGCG
TTCATCGGTG CGTTTCCAAG CAAAAACTGC ATTTTTTTCA CCTCCACGTG
GGACACTAGG ACGGCTCGTG TAATGTCGAC TACTACCAAT GTGTGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGGGTGTGT
GCGAGTTTGT GAACCAATGG GACAAACCCA ACATGAGGTG CTCTCTCACT
ACTTTTGAGA GAGAATCACG AGAGAGGACA AATGAACCAG CAGCAGTTTC
AATATT
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wmc530(26b1.1)
Plate reference : 26b1.1
WMC locus number : WMC530 Length of sequence : 256
Last updated : Ven 12 F思 1999 at 11:13
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Multiple inserts in this clone, this is the first insert. Trimmed to insert at both ends. Bases 110 to 143 (complement) show homology to 8c1.1 bases 285 to 318 (34 in longest run, maxScore = 32) Primers show no real match to 8c1.1. (GA)15 42 to 71, (GA)5 74 to 83, (TA)5 164 to 173.
PCR Comments : 61C anneal, polymorphic on acrylamide (160-250 bases).
Forward primer details :
cggcTcTTTAAcgAgcTgTg at 20 length 20 bases, Tm 63
Reverse primer details :
cggcgcTTgTTTTcTAgggT at 198 length 20 bases, Tm 65
Expected size of amplified fragment (Chinese Spring=) 198 bases.
Length of sequence : 256 Consensus sequence is :
..
CCTGGTGAAC GGATCCTGCC GGCTCTTTAA CGAGCTGTGA GGAGAGAGAG
AGAGAGAGAG AGAGAGAGAG ATAGAGAGAG AGAGGCCAAC GAAGTCTTGT
TTAGATCTAG AGAGGGTGAG AGAGTGTGAA GAGAGCAACT ACAAGCGTTG
AGGCTCCAGC ATGTATATAT ATAGTGGAGA GAGTGTGAAG AGTGCAAACC
CTAGAAAACA AGCGCCGAGG CTGCAGCGTA TACAGATGGA CTGGTTTTCT
TTTTCT
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wmc531(26b1.2)
Plate reference : 26b1.2
WMC locus number : WMC531 Length of sequence : 268
Last updated : Ven 12 F思 1999 at 11:19
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Multiple inserts in this clone, this is the second insert. Trimmed to insert at both ends. Bases 168 to 202 show homology to 1C2 bases 336 to 370 (35 in longest run, maxScore = 63). Reverse primer 2 mismatches to 1c2, forward primer no match. (CT)6 137 to 146, (GT)12 147 to 170.
PCR Comments : 51C anneal, smear.
Forward primer details :
AATgATATATcTcccTgTTcgg at 7 length 22 bases, Tm 59
Reverse primer details :
TggTgATATATcgTTTgTgTcc at 198 length 22 bases, Tm 59
Expected size of amplified fragment (Chinese Spring=) 213 bases.
Length of sequence : 268 Consensus sequence is :
..
CACACAAATG ATATATCTCC CTGTTCGGGA CTCAATCGAC ACACTCTATG
CTCTCTCACG CAGATTGTCT ATCTAGGTCA GTCCATCCAA GCCGCTCCCA
CTCTTTCAAC CTCATGGTGG GCTACACTCG CTCAATCTCT CTCTCTGTGT
GTGTGTGTGT GTGTGTGTGT ATGTCTCGAT TGACCTTGCT CTTTCTCGGA
CACAAACGAT ATATCACCAT GTTTGAGCCC AATTCGACAT ATTCATAATG
TATACTCCCA AACGCACA
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wmc532(26c1)
Plate reference : 26c1
WMC locus number : WMC532 Length of sequence : 224
Last updated : Lun 30 oct 2000 at 16:59
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 84 to 105 (complement) show homology to 9a6 bases 751 to 772 (22 in longest run, maxScore = 61). Forward primer has at least 5 mismatches to 9a6, reverse has no real match to 9a6. (GA)5 72 to 81, (GA)11 84 to 105. Bases 84 to 105 show homology to TW7b07 bases 120 to 141 (22 in longest run, maxScore = 24).
PCR Comments : 61C anneal, polymorphic on acrylamide (160-180 bases).
Forward primer details :
gATAcATcAAgATcgTgccAAA at 40 length 20 bases, Tm 62
Reverse primer details :
gggAgAAATcATTAAcgAAggg at 194 length 20 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 176 bases.
Length of sequence : 224 Consensus sequence is :
..
GAAAACATCA TATGATCCAA CTATATTAAT AAAGCTCACG ATACATCAAG
ATCGTGCCAA ATCAAGAACA CGAGAGAGAG AGGGAGAGAG AGAGAGAGAG
AGAGACTAAA CACATAACTA CTGGTACAAA CCATCAGCCC CGAGGGTGAA
CTACTCCCTC CTGATCATGG TGGCCATTGG GATGATGAAG ATGCCCTTCG
TTAATGATTT CTCCCTCTGG CAGG
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wmc(26d1)
Plate reference : 26d1
WMC locus number : WMC Length of sequence : 190
Last updated : Mer 3 F思 1999 at 14:58
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. No substantial microsatellite.
PCR Comments :
Length of sequence : 190 Consensus sequence is :
..
CATCTGCGAT GGATAGGCGC CAGGCGGAGC GGCAATATGC GCATCGTAGG
GAGGTACGGC AGACCCCCCA TAGGGCGTGG TAGACGCAGC TCCATAGGAC
AGCGGCGGCG CGTGCGCCGT ATAGGGTTGC GGGGGCAGTG CTCCAGAGGA
AGGCGCGGGC CACGCGGATG GCGGCGGCGG CGCTGCACCA
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wmc(26e1)
Plate reference : 26e1
WMC locus number : WMC Length of sequence : 169
Last updated : Ven 12 F思 1999 at 13:33
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 34 to 74 show homology to 12a2 bases 1 to 41 (41 in longest run, maxScore = 74). No substantial microsatellite.
PCR Comments :
Length of sequence : 169 Consensus sequence is :
..
GCTGCAATAA ATAAGTTGAG CAGATACGAA AGAGTACCGC CTCTGGTGCG
GCGCCGTGTA TGCATCTGCT GAGAATTTGA CGGTGCTATG GTAGCGATGG
CTGTCGGCGG CATGGAAGCA GATCTAGGAG GGTAGACGGT GGCGGCGGGG
GCGGTGGACG AGACGGTCG
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wmc(26f1)
Plate reference : 26f1
WMC locus number : WMC Length of sequence : 449
Last updated : Ven 12 F思 1999 at 13:33
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 323 to 345 show homology to 13e4 bases 173 to 195 (23 in longest run, maxScore = 52). (CA)8 44 to 59, (CA)4 108 to 115, (CA)6 171 to 182, (CA)6 344 to 355. Too difficult to make primers, sequence is embedded in ministallite like domains..
PCR Comments :
Length of sequence : 449 Consensus sequence is :
..
CTAGTTGCAA GTCGATGCTC AACATGCAAC TAGGGACCCT CGACACACAC
ACACACACAC CCTAGTTGCG AGCCGATGGG CGACATGCAA CTAGGGACCG
CGATGAACAC ACACAGACAC CGCCCCAGTT GTGAGTCGAT GCCCGCATGC
AACTAGGGAC CCTCGGCAAA CACACACACA CACCTAGTTA CGAGTCGACG
GTTGACATGC AACTAGGTCC CTCAAGAAAC AAACATACAC CCCCTAGTTG
CGAGTCGATG GTTACCATGA AACTAGGGAC CCTCGACATT CACACACTCC
CTAGTTGCGA GTCGATGCTT GGCATGCAAC TGGGGACCCT CGACACACAC
ACACACCTAG TTGCGATTCG ATGGTTGACA AGCAACTGGG GACCCTCGAC
AAACACACAC ACCCCAAGTT GATTCGATGG TTGACATGCA ACTGGGGGC
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wmc(26g1)
Plate reference : 26g1
WMC locus number : WMC Length of sequence : 6
Last updated : Mer 3 F思 1999 at 14:58
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : No sequence 20.1.99.
PCR Comments :
No sequence available for this clone
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wmc533(26h1)
Plate reference : 26h1
WMC locus number : WMC533 Length of sequence : 395
Last updated : Ven 12 F思 1999 at 13:44
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. (CA)20 189 to 228.
PCR Comments : 61C anneal, polymorphic on acrylamide (140-156 bases).
Forward primer details :
AATTggATcggcAgTTggAg at 131 length 20 bases, Tm 64
Reverse primer details :
AgcAAgcAgAgcATTgcgTT at 258 length 20 bases, Tm 65
Expected size of amplified fragment (Chinese Spring=) 147 bases.
Length of sequence : 395 Consensus sequence is :
..
GCTCGCCTGG TCGGGCTCGA GCCAGGGCGA AGGAAGTTGT ACACTACATC
CGTAAAAAAA AATTGTACAT TAAGATTCTC TAGTCTATCT GAACCTAACT
TCGCTAAAAT TCTTTCTCGA TTAACATGGC AATTGGATCG GCAGTTGGAG
CTCTCATATA TAAATCCCAA GAGACGATGG CCAGGGGACA CACACACACA
CACACACACA CACACACACA CACACACACG GACAGCAGGA GCGAGAGAGG
GGTGTGCAAC GCAATGCTCT GCTTGCTTGT ACACGTACAC CATCATCTCT
TCTAGTTGAG CAGGTGCTTC CGCAGACACG CCAGGACAGT GTTCCCTCCC
GTCTGTTGCC GCTCCGTGTC TGCTGGTGAG TCCAAAATCC GTATG
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wmc(26a2)
Plate reference : 26a2
WMC locus number : WMC Length of sequence : 368
Last updated : Lun 8 F思 1999 at 10:07
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 59 to 92 (complement) show homology to 24E10 bases 224 to 257 (34 in longest run, maxScore = 97). No substantial microsatellite.
PCR Comments :
Length of sequence : 368 Consensus sequence is :
..
CCAAAAATCG AGGCGCTTTC GTGGCGAGAT AATCACGCCG TGGCCTCCTC
GTTTCTCGCG CCCACTTATG AGCCTCACCT TATAAATAGC CCGGCCCATG
AGCCTCCAGT TACTCGTCGC CTCCATCTTC TTCCTCCTCT CGCCACTGTG
CTGCCGCCCG AGCTCCGCCG CCGCCGCCGC GGGTTTCCTC GGCTTCACCA
ACTCAGGCCG CTGCATCAAC CTGACGTGAC CAGAGAAACG CGACGAACCT
CCGCAGTAAC TCCACATCTG TAAGTCCCTG CACCTCTCCA CCGTAGATCC
ATATTAGGGT TCCACTGTTC TTCCTCTGTT CTTCGCTGTT CTTCTCGAGT
TTTCTGTAGT TCTTCCAC
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wmc534(26b2)
Plate reference : 26b2
WMC locus number : WMC534 Length of sequence : 306
Last updated : Ven 12 F思 1999 at 14:57
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 109 to 129 show homology to 14g2 bases 359 to 379 (21 in longest run, maxScore = 23). Primers have no apparent match to 14g2. (GT)23 82 to 127.
PCR Comments : 51C anneal, polymorphic on acrylamide (130 bases and 210 bases - dominant markers?).
Forward primer details :
ggAggATTTcTcTcATAcTggA at 13 length 22 bases, Tm 59
Reverse primer details :
AgcgTgTTTATgATAgATgggT at 161 length 22 bases, Tm 59
Expected size of amplified fragment (Chinese Spring=) 170 bases.
Length of sequence : 306 Consensus sequence is :
..
GTCTACCAGT GAGGAGGATT TCTCTCATAC TGGACTCAAA AGACTGGTTT
ATCAATAAAT GCGTTTGTTT TTAGATTCCA GGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTCAT TTTTTTGCCA AGTCAGCTCT
GACGATATGG ACCCATCTAT CATAAACACG CTTAAATGAG CCAAAGTGGA
TGATCAGTGC TCTCTGCAAG AGGTTTAGTG AAAATGCAGT GATTTTTGCA
ACAAATTAGC AACTTGGTGG TTTTCTGCAA ACCTAGCCAC AAATGTGGTA
GTTTTG
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wmc535(26c2)
Plate reference : 26c2
WMC locus number : WMC535 Length of sequence : 402
Last updated : Ven 12 F思 1999 at 15:06
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Ssp1 at 3' end. Bases 283 to 358 show homology to 5e3 bases 138 to 213 (76 in longest run, maxScore = 136). Reverse primer has 3 mismatches to 5e3, forward primer sequence is not in 5e3. (GA)11 115 to 136, (GT)6 347 to 358, (GT)5 371 to 380, (GT)5 385 to 394.
PCR Comments : 61C anneal, smear (120-160 bases). 51C anneal, product.
Forward primer details :
ATgTTTgATgAgAgAgcTggAA at 7 length 22 bases, Tm 61
Reverse primer details :
ATgTAAcAAcggcTgAcTgAcT at 153 length 22 bases, Tm 61
Expected size of amplified fragment (Chinese Spring=) 168 bases.
Length of sequence : 402 Consensus sequence is :
..
GACAACATGT TTGATGAGAG AGCTGGAAAA ACATGGACGA GAGGGGAAGG
ATCTCATGGG TTGAGGGATT GACAATTTTG TGCGGAGGAG GGAGGGATTG
GTAATTTTGT GCAAGAGAGA GAGAGAGAGA GAGAGAGGGT GGGGAGGCGA
CGAGTCAGTC AGCCGTTGTT ACATCACCCT GCTTCCAAAT GACCCCGCAT
TCTCTAGCGC GGTGTGGTCG TCGTCTTCGA TCTGCTCGAC GCCCTCTTTG
AAAATTGAGG TGTTGTGCAT GTTGGGGTGA AAAGAAGCAC AAGCGAGAGT
GGTCGCCGTA TAACCTTGGA TGGGGATGAA TTGTGTGCTC GGGGGAGTGT
GTGTGTGTTG TGTTGCGCGC GTGTGTGTGT GCATGTGTGT GTGTCAAATA
TT
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wmc536(26d2)
Plate reference : 26d2
WMC locus number : WMC536 Length of sequence : 302
Last updated : Ven 12 F思 1999 at 15:13
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Trimmed to Ssp1 at 5' end and to insert at 3' end. Bases 1 to 302 show homology to 26e2 bases 1 to 302 (302 in longest run, maxScore = 190). (GT)32 193 to 256. Duplicate with 26e2, 26d2 has priority.
PCR Comments : tested 61C anneal, no product.
Forward primer details :
AAcATTTAAcccTAcAATgccA at 55 length 22 bases, Tm 60
Reverse primer details :
TAAcTAggATgcAcgcAgTcAA at 261 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 228 bases.
Length of sequence : 302 Consensus sequence is :
..
AATATTTGTG ATGCGCATTA ATGATAGAGT GTGTGCTATA ATATGCATAT
CACAAACATT TAACCCTACA ATGCCATTTG CGATACGTCA AACATCACAT
ACGTTTTAGA AATGCAAAAT GTGTGCGGTG CTACCATTGT CGCACATGTT
TTCTAGTTAT CCGCACATGT TTGTACCAAG AAATGTGTGT GCGTGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGTAGTG TTGACTGCGT GCATCCTAGT TATGCAGAGG CTGGATGTGC
AC
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wmc(26e2)
Plate reference : 26e2
WMC locus number : WMC Length of sequence : 302
Last updated : Ven 12 F思 1999 at 15:22
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Trimmed to Ssp1 at 5' end and to insert at 3' end. Bases 1 to 302 show homology to 26d2 bases 1 to 302 (302 in longest run, maxScore = 190). (GT)32 193 to 256. Duplicate, 26d2 has precedence.
PCR Comments :
Length of sequence : 302 Consensus sequence is :
..
AATATTTGTG ATGCGCATTA ATGATAGAGT GTGTGCTATA ATATGCATAT
CACAAACATT TAACCCTACA ATGCCATTTG CGATACGTCA AACATCACAT
ACGTTTTAGA AATGCAAAAT GTGTGCGGTG CTACCATTGT CGCACATGTT
TTCTAGTTAT CCGCACATGT TTGTACCAAG AAATGTGTGT GCGTGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGTAGTG TTGACTGCGT GCATCCTAGT TATGCAGAGG CTGGATGTGC
AC
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wmc(26f2)
Plate reference : 26f2
WMC locus number : WMC Length of sequence : 247
Last updated : Lun 5 juil 1999 at 17:23
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 113 to 139 (complement) show homology to 4b10 bases 63 to 89 (27 in longest run, maxScore = 76). Bases 1 to 247 show homology to 26h2 bases 1 to 247 (247 in longest run, maxScore = 186). (GT)12 107 to 130. Near duplicate, 4b10 has precedence. Bases 107 to 136 show homology to 26a8 bases 94 to 123 (complement) (30 in longest run, maxScore = 111).
PCR Comments :
Length of sequence : 247 Consensus sequence is :
..
CGTGGACTAA TTCGTCACCT CTTCGCTTCT TGTACATACT CCATTTGTAT
CTCACTTCCT CTGGCTTCGC ACTCGCATGA TTTTCCTATT CTATGAACCT
GTGTGCGTGT GTGTGTGTGT GTGTGTGTGT TTAACAGCAT GTGTGTGTTA
GAGAGAGCGA CAGATCGACC TACTCCTATA GAGTTATGGT GTGTAGTGTA
TGATTTTAGC CGCGAAAGTC AGTGCATCCT CTCGTTTCCG GGCGTCC
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wmc(26g2)
Plate reference : 26g2
WMC locus number : WMC Length of sequence : 222
Last updated : Mer 3 F思 1999 at 14:58
Owner : Madre, Secobra Date at Agrogene : 20.1.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. No substantial microsatellite.
PCR Comments :
Length of sequence : 222 Consensus sequence is :
..
CCCAGCCGCC TGCTTCCCCT CCTCTCGACC GCTCCATACA TCCAGATCGC
GGCCCCATCC CCATCCTCCT CTCATGTCAC GGCGGCCGAT GGACCGCCGC
CACCACCCTC CTACTCTCTT GCCGCCGCCG TCCTCCCGCT CGCTCGCCGC
CGCCGTCGCC ACCAATCTCG GCGAAGGCGT TGTTGCTGCT ATGTCGCCTC
CTTTCCCCGT CCAAGCCTGA CC
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