Wheat microsatellite WMC 25/06/01
wmc(26b7)
Plate reference : 26b7
WMC locus number : WMC Length of sequence : 109
Last updated : Mar 20 Juil 1999 at 16:54
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Sequence in 1 direction only. No trimming on 5' end, end not located, trimmed to insert at 3' end. (CA)27 55 to 108. No room for primers.
PCR Comments :
Length of sequence : 109 Consensus sequence is :
..
GCATGCACGC ACCCACCCCA CACACACTAA GACTCYACCT CTGTCTCTCT
CTCTCACACA CACACACACA CACACACACA CACACACACA CACACACACA
CACACACAC
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wmc(26c7)
Plate reference : 26c7
WMC locus number : WMC Length of sequence : 89
Last updated : Mar 20 Juil 1999 at 16:54
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. (CA)29 1 to 58. No room for primers.
PCR Comments :
Length of sequence : 89 Consensus sequence is :
..
CACACACACA CACACACACA CACACACACA CACACACACA CACACACACA
CACACACATA GCAGAACCAA TCCAACATTT ACATTCATG
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wmc(26d7)
Plate reference : 26d7
WMC locus number : WMC Length of sequence : 131
Last updated : Mar 20 Juil 1999 at 16:57
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 91 to 131 show homology to 3a5 bases 97 to 137 (41 in longest run, maxScore = 28). (CT)8 13 to 28. Near duplicate with 3a5, 3a5 has precedence.
PCR Comments :
Length of sequence : 131 Consensus sequence is :
..
CTAAGACTCC ATCTCTCTCT CTCTCTCTCA CACACACACA CAAACACACA
CACGCATGCA CCCCCCCACA CACTTAGACT CCATCTCTCT CTCTCTCTCA
CACACACACA AACTAAGACT CCATCTCTCT C
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wmc(26e7)
Plate reference : 26e7
WMC locus number : WMC Length of sequence : 301
Last updated : Mar 20 Juil 1999 at 17:47
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 94 to 159 show homology to 12h9 bases 62 to 127 (66 in longest run, maxScore = 72). (CT)15 259 to 288. No room for primers.
PCR Comments :
Length of sequence : 301 Consensus sequence is :
..
CACACACTCC CTCTCACACA AACGCGCGCA CAAACACACA CAGACACGGA
CAAACACCCA TTAATCTGGA TCCTCATCTC TCCCCACGTC CGAATGTGTA
TCTCACACAC TCACTCTCTA ATTATGTATA TGTGTCTCCA CGTTACACAA
CACAAAGCCC CATGTACATG TCTCTCTCTA TCCTCCACAC ATATAGACAC
AAAGAATCTG TTATCATTGC CTCAGCCTCT AGACATATCA GACACGCACA
CACACACACT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCG CAAACACGCC
C
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wmc(26f7)
Plate reference : 26f7
WMC locus number : WMC Length of sequence : 6
Last updated : Lun 5 juil 1999 at 15:54
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : No sequence readable after several attempts.
PCR Comments :
No sequence available for this clone
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wmc546(26g7)
Plate reference : 26g7
WMC locus number : WMC546 Length of sequence : 223
Last updated : Lun 20 sep 1999 at 17:38
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Ssp1 at 3' end. Bases 172 to 202 (complement) show homology to 22d9 bases 22 to 52 (31 in longest run, maxScore = 58). Reverse has 4 mismatches to 22d9, forward primer no obvious match. (CA)9 95 to 112, (CA)8 115 to 130.
PCR Comments : 61C anneal, polymorphic on acrylamide (110-170 bases, complex).
Forward primer details :
cggcTAAAATcgTAcAcTAcAcA at 12 length 23 bases, Tm 61
Reverse primer details :
cTcAcTTgcAcgATTTcccTAT at 141 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 151 bases.
Length of sequence : 223 Consensus sequence is :
..
ACCGACTCTC GCGGCTAAAA TCGTACACTA CACACCATCT CTCTTTAGGT
GTAGGTCGAT CTGTCACTCT TTCTAACACA CACATGCTGT TAAACACACA
CACACACACA CACGCACACA CACACACACA GGTTCGTAGA ATAGGGAAAT
CGTGCAAGTG AGAAGCCACA GGAAGTGAGA TACAAATGGA GTACGTACAA
GAGGAGAAGA GGTGACGAAT ATT
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wmc(26h7)
Plate reference : 26h7
WMC locus number : WMC Length of sequence : 132
Last updated : Mer 21 Juil 1999 at 10:13
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 101 to 132 (complement) show homology to 3f6 bases 128 to 159 (32 in longest run, maxScore = 41). (GT)16 9 to 40. Duplicate with 3f6, 3f6 has precedence.
PCR Comments :
Length of sequence : 132 Consensus sequence is :
..
CCTTATAAGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT ATGTGTGTGT
GTATCTGTGT GTGTGTATGT TGTTATGTAT GCAATCCCAT CGCACAACAT
ACACGTCTTG TTAAGTTGAA CCGTTTCTGT TC
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wmc(26a8)
Plate reference : 26a8
WMC locus number : WMC Length of sequence : 223
Last updated : Mer 21 Juil 1999 at 10:15
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Ssp1 at 3' end. Bases 94 to 123 (complement) show homology to 26f2 bases 107 to 136 (30 in longest run, maxScore = 111). (CA)15 101 to 130. Near duplicate with 26f2, 26f2 has precedence.
PCR Comments :
Length of sequence : 223 Consensus sequence is :
..
GGATGCACCG ACTCTTGCAG CTAAAATCAT ACACTACATA CCAACTCTCT
GTAGGAGTAG GTCGATATGT CGCTCTCTCT AACACACAAA TGTTGTTAAA
CACACACACA CACACACACA CACACACACA TGTTCATAGA ATAGGAAAAT
CGTGCGAGTG CGAAGCCACA GGAAGTGAGA TACAAATGGA GTACGTACAA
GAAGAGAAGA GGTGACGAAT ATT
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wmc(26b8)
Plate reference : 26b8
WMC locus number : WMC Length of sequence : 434
Last updated : Mer 21 Juil 1999 at 10:16
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 401 to 434 (complement) show homology to 2f7 bases 2 to 35 (34 in longest run, maxScore = 39). (TTG)10 126 to 155, (TTG)55 195 to 359, (GTA)11 401 to 433. No room for primers.
PCR Comments :
Length of sequence : 434 Consensus sequence is :
..
GCTGTTGTTG TTGTTTATTG CTGTTGTTGC TGTTGTTGTT GCTGTTGTGG
TTGTTGATGT TGTTGCTGTT GTTGCTGTTG TTGTTGCTGT TGTTGCTGTT
GTTGCTGCTA TTGTTGTTGT TGCTGTTGTT GTTGTTGTTG TTGTTGTTGT
TGTTGTGGTT GTTGTTGTGG TTGTTGTTGT GGTTGTGGTT TTGGTTGTTG
TTGTTGTTGT TGTTGTTGTT GTTGTTGTTG TTGTTGTTGT TGTTGTTGTT
GTTGTTGTTG TTGTTGTTGT TGTTGTTGTT GTTGTTGTTG TTGTTGTTGT
TGTTGTTGTT GTTGTTGTTG TTGTTGTTGT TGTTGTTGTT GTTGTTGTTG
TTGTTGTTGC TGTTGCTAGT GTTGCTGTTG CTGCTGCTGT TGCCGTTGCT
GTAGTAGTAG TAGTAGTAGT AGTAGTAGTA GTAG
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wmc(26c8)
Plate reference : 26c8
WMC locus number : WMC Length of sequence : 369
Last updated : Lun 5 juil 1999 at 17:23
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 250 to 269 (complement) show homology to 1b11 bases 82 to 101 (20 in longest run, maxScore = 55). No substantial microsatellite.
PCR Comments :
Length of sequence : 369 Consensus sequence is :
..
AGACCCGCGG CGGCGGCGGC GGTGGAGCTC GAGTACAGCA CAGTGGCGAG
AGGAAGAAGA TGGAGGTGGC AAAGTGACTG GAGGCTCATT GGGCCGGGCT
ATTTATAAGG CGAGGCTCAT AAGTGGGCGC GAGGAACAAG GAGGCTACGG
CGTGGTTATC TCGCCATAAA AACGCCTCGA TTTTCAGGAC GGCAGTTAAA
GATAAGATCC GTTGCGGATA TGGTGGAGTA AAAAATGGAC TTAATGGAAG
ATGACGTCAC GGCGGATTAC CCGGAATCCA GAGGATGACG TCACGCCGGG
TTATGGCCTT CACACAATTG TAAGCCGGAG ATTTTCTGTC GAAAGGATTG
AAGATTGACA TGAGCCGGC
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wmc(26d8)
Plate reference : 26d8
WMC locus number : WMC Length of sequence : 296
Last updated : Lun 5 juil 1999 at 15:54
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. No substantial microsatellite.
PCR Comments :
Length of sequence : 296 Consensus sequence is :
..
GGCCGTCACC GTCGCCGTCG CCGCCGCCTC CGCCGCCTGG AAGTAGAAGG
CCCGCAAGTC CATGAGGGTA GTGCCGGTTG TGGTGGTGGT GGTGGCGGTG
AGTGGTGTGG GCTTCTCAGC TGGATGGGCA CTGTATCCGT TTCTCTTCAA
AGAGCCGGCC GGGCGAGCGA ATTAATTAAA ACCCAATCTC CTCCTTCACG
CCGCAGACAA GAAACGGACT CTCTGACTCC CGTCTCAGTA CAATTCCTTC
TCTTCTCTTC CACCTGGAAA ATCAGGATCC GAAAGTGGCC AATCAG
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wmc(26e8)
Plate reference : 26e8
WMC locus number : WMC Length of sequence : 308
Last updated : Lun 5 juil 1999 at 15:54
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. No substantial microsatellite.
PCR Comments :
Length of sequence : 308 Consensus sequence is :
..
GGGCGGGGCG GGGACTTGCC TGGCGGCGGG TAGGCCTCCT GCGGAGGGAC
CTGCTGATAG CTCATCGTCT CTCGGCGTCG GCGGCGGCGG GGTCGATCCC
TTTCTCCTTG TGATCTACGG CGGGCGGACG GGGTCGTTCG GTTGACGCCG
GGACGGAGGA AAGCCGAGAC GAGAAGCAAA CCGCACGGGG TTCTCGCCGC
GACCCAGCGA CTTCCTTCCG CTTCCCGTGG GTTCTAAGGG TATATAATGT
TTACCACGGC AACTAACCAA CAAAGCTGGG AATAGCTCAG TTGGCTAGAG
CGTGTGGC
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wmc(26f8)
Plate reference : 26f8
WMC locus number : WMC Length of sequence : 152
Last updated : Lun 5 juil 1999 at 15:54
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Ssp1 at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 152 Consensus sequence is :
..
CGAGATGCCA TGGAGAGGAG GAGAGGTCGC GAGGGAGAGG AGAGGCGCTG
CATTGGGATG GCACGTTAGG GCGTCGGAGG GCCTGTAGAA CAGAGCGCGC
CGGGGATTTG CGTCTGAGCG CGCGACGGAC GGCGGCGGCG GCGGGGAATA
TT
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wmc(26g8)
Plate reference : 26g8
WMC locus number : WMC Length of sequence : 231
Last updated : Lun 5 juil 1999 at 15:54
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. No substantial microsatellite.
PCR Comments :
Length of sequence : 231 Consensus sequence is :
..
GCACCGTCGC CATCCTAGTC TATCGGCGAG GAATAAAGTG GATGATTATA
AAGTTTGAAC ATGCCCGTAT GTGTATATCT CTAGGTTTGA TATATGAATT
TGAAATCACG AAATCCTGGC TTAAAAAATG TACCTCCGTT TAAATGAATT
ACAAAAGCTA ATGATGGAGT CGAATTCCAA AATTCCAGTC TTAGGTTTGT
AATTCTGGTA CATCAAGGTA TATCACGCAT G
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wmc(26h8)
Plate reference : 26h8
WMC locus number : WMC Length of sequence : 199
Last updated : Mer 21 Juil 1999 at 10:23
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 96 to 142 (complement) show homology to 21a11 bases 160 to 206 (47 in longest run, maxScore = 36). (CT)8 126 to 141. Near duplicate with 21a11, 21a11 has precedence.
PCR Comments :
Length of sequence : 199 Consensus sequence is :
..
CACACACACA TGCACGCACG CACGTACGCA CCCCCCACAC ACTAAGAATC
CATCTCTCTC TCTCTCACAC ACACACACAA ACACACACCC ACACGCACGC
ACCCCCCCAC ACACTTAGAC TCCATCTCTC TCTCTCTCTC TCACACACAC
ACAGAAACTA AGACTCCATC TCTCTCTCTC TCCTCTCTCT CTCTCTCAC
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wmc547(26a9)
Plate reference : 26a9
WMC locus number : WMC547 Length of sequence : 191
Last updated : Mer 21 Juil 1999 at 10:30
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. (GT)6 103 to 114, (GT)13 120 to 145.
PCR Comments : 51C anneal, product (98-164 bases complex, possibly polymorphic).
Forward primer details :
gTgcgTgcgcTTAcAcTAc at 26 length 19 bases, Tm 60
Reverse primer details :
AgAAAcAcgcAgcAAgAcA at 172 length 19 bases, Tm 60
Expected size of amplified fragment (Chinese Spring=) 165 bases.
Length of sequence : 191 Consensus sequence is :
..
GTGATATGTT TGTGCACGCG CGCGTGTGCG TGCGCTTACA CTACGTGCGT
GTGTGCGTGT TTGTGTGTGC TACTGCATGT GTACATGTGT GTGTGCTGTC
ACGTGTGTGT GTGTGATGCG TGTGTGTGTG TGTGTGTGTG TGTGTTGTTG
TTGTGTGTGT GCGCATGCGT GTGTCTTGCT GCGTGTTTCT G
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wmc548(26b9)
Plate reference : 26b9
WMC locus number : WMC548 Length of sequence : 184
Last updated : Mer 21 Juil 1999 at 10:40
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. (CA)4 48 to 55, (CA)17 60 to 93, (CG)7 102 to 115.
PCR Comments :
Forward primer details :
cAcATTgATggAggTAcAcA at 26 length 20 bases, Tm 57
Reverse primer details :
cTccTccTcTAAcccTgATT at 141 length 20 bases, Tm 57
Expected size of amplified fragment (Chinese Spring=) 135 bases.
Length of sequence : 184 Consensus sequence is :
..
GGACGAGTAG CGGTCGGATG GGGAGCACAT TGATGGAGGT ACACACGCAC
ACACACGCGC ACACACACAC ACACACACAC ACACACACAC ACAACCACAC
ACGCGCGCGC GCGCGCACAC AGACCTGGAT GGAGGACCGG AATCAGGGTT
AGAGGAGGAG GAGATGCAGC GGCGGCTCGT GGTG
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wmc(26c9)
Plate reference : 26c9
WMC locus number : WMC Length of sequence : 337
Last updated : Mer 21 Juil 1999 at 10:41
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 23 to 44 (complement) show homology to 8c1.2 bases 130 to 151 (22 in longest run, maxScore = 76). Bases 1 to 332 show homology to 26d9 bases 1 to 332 (332 in longest run, maxScore = 294). No substantial microsatellite. Duplicate with 26d9, 26c9 has priority.
PCR Comments :
Length of sequence : 337 Consensus sequence is :
..
GGCATAAGTG GAGCTAGGAG AGTCCAAATG AGGTGCGGTT TTCGGCCACG
CGATCGTGAT CGAACGCTCT AGGACATGGA GCAGAGTTTG GTGGGTTTTG
GGCCAAATTG GAGGGGTGTT GGGCTGCAAC ACACACGAGG CCTTTTCGGT
CCCTCGGTTA ACCATTGGAG TATCAAACGA AGTCCAAATG GCACGAAACT
CGACAGGCGG TCTACCGGTA GTTAACCAAG GCCGCTTGGC AAGTCTCGGT
CCAATCCGGA AATGTTTAAT CCCCACACAC GAAAGAAAGC TAGAAATGAC
CACCGGAGGA GAACAAAGCG CCGGAATGCA AACGGAT
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wmc(26d9)
Plate reference : 26d9
WMC locus number : WMC Length of sequence : 338
Last updated : Mer 21 Juil 1999 at 10:41
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 1 to 332 show homology to 26c9 bases 1 to 332 (332 in longest run, maxScore = 294). No substantial microsatellite. Duplicate with 26c9, 26c9 has precedence.
PCR Comments :
Length of sequence : 338 Consensus sequence is :
..
GGCATAAGTG GAGCTAGGAG AGTCCAAATG AGGTGCGGTT TTCGGCCACG
CGATCGTGAT CGAACGCTCT AGGACATGGA GCAGAGTTTG GTGGGTTTTG
GGCCAAATTG GAGGGGTGTT GGGCTGCAAC ACACACGAGG CCTTTTCGGT
CCCTCGGTTA ACCATTGGAG TATCAAACGA AGTCCAAATG GCACGAAACT
CGACAGGCGG TCTACCGGTA GTTAACCAAG GCCGCTTGGC AAGTCTCGGT
CCAATCCGGA AATGTTTAAT CCCCACACAC GAAAGAAAGC TAGAAATGAC
CACCGGAGGA GAACAAAGCG CCGGAATGCA AAACGGAT
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wmc549(26e9)
Plate reference : 26e9
WMC locus number : WMC549 Length of sequence : 195
Last updated : Mer 21 Juil 1999 at 11:00
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 77 to 98 show homology to 6b12 bases 205 to 226 (22 in longest run, maxScore = 73), forward primer no obvious match to 6b12, reverse primer has 3 mismatches.. (CA)4 52 to 59, (CA)5 61 to 70, (CA)7 73 to 86.
PCR Comments : 61C anneal, product (144-202 bases), complex .
Forward primer details :
TTgTcAcAcAcgcAcTccc at 11 length 19 bases, Tm 64
Reverse primer details :
gTccTTcccTcgTTcATccT at 176 length 20 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 185 bases.
Length of sequence : 195 Consensus sequence is :
..
CTTTGTGTCT TTGTCACACA CGCACTCCCT CCTCCTCCTC TCTCCCTCTC
TCACACACAC CACACACACA GACACACACA CACACATGGG CTTTTTGCGA
CAAATAGCAA CATGCCCATG CGTTGCACGG AACATCAAGA TGCATTTGTA
TGAGTAGTTT ATCTTGTGGG AGAAAAGGAT GAACGAGGGA AGGAC
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wmc(26f9)
Plate reference : 26f9
WMC locus number : WMC Length of sequence : 207
Last updated : Mer 21 Juil 1999 at 11:04
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 20 to 76 show homology to 7a10 bases 40 to 96 (57 in longest run, maxScore = 83). (GT)6 110 to 121, (CA)6 122 to 133, (GT)6 148 to 159, (GT)7 188 to 201. Near duplicate with 7a10, 7a10 has precedence.
PCR Comments :
Length of sequence : 207 Consensus sequence is :
..
TGTTATGCAA GTAAATTATG GTGATTGTTT ATCATACGGG TAAGGTTGGA
TGAAGGGTGG TAGGAACAAA TGCTCCTCCT AGAGCATGTG TGTGTGAAAT
GGAGTCTTAG TGTGTGTGTG TGAGAGAGAG AGATGGAGTC TTAGTTTGTG
TGTGTGTGTG AGACAGAGAG ATGGAGTCTT AGTGTGCGTG TGTGTGTGTG
TGGGGGG
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wmc550(26g9)
Plate reference : 26g9
WMC locus number : WMC550 Length of sequence : 444
Last updated : Mer 21 Juil 1999 at 11:27
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to Ssp1 at 5' end and to insert at 3' end. (CA)15 174 to 203.
PCR Comments : 61C anneal, polymorphic on acrylamide (166-174 bases).
Forward primer details :
gAcccTgTgcTgcTATggAT at 81 length 20 bases, Tm 62
Reverse primer details :
gccAccccTggTgAATTTAc at 241 length 20 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 180 bases.
Length of sequence : 444 Consensus sequence is :
..
AATATTCCAC TACACAGATT GAGCGAGGAG ATGCAGGGAA TGGAGGGGAT
CTCCATTGCG CCACCGCGAG TGAGGGGGGT GACCCTGTGC TGCTATGGAT
GCAGGAGCCG ACACTACACC ATTCGGGAGG GTACCATTGT CCCGAGGACC
TCATGCGAGG AGGTAGGTGA CGCCACACAC ACACACACAC ACACACACAC
ACACCACCTA CTTATATTGA AGTTGTGTGG TTTCAAGATT GTAAATTCAC
CAGGGGTGGC TCGCAATCGA TGGAACACAT GTTGCATTTC ACTGAAATAA
AATCCTCGTT AATGAGGCAC ATAGAGTGTG GATCTAGGGT TTTATCCTTG
TGGGTGGTAG ATTGTTTAGT TTGTTAGGAG ACACATGGAT GGAGTAGTTA
GATCAGGAGA TGGTGACGAC GGGGAGGCAA CCGAAGGAGA TTGG
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wmc(26h9)
Plate reference : 26h9
WMC locus number : WMC Length of sequence : 168
Last updated : Mer 21 Juil 1999 at 11:27
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Ssp1 at 3' end. Bases 57 to 168 show homology to 26a1 bases 395 to 506 (112 in longest run, maxScore = 83). (GT)29 5 to 62. Duplicate with 26a1, 26a1 has precedence.
PCR Comments :
Length of sequence : 168 Consensus sequence is :
..
CAATGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGTGTGT GTGCGAGTTT GTGAACCAAT GGGACAAACC CAACATGAGG
TGCTCTCTCA CTACTTTTGA GAGAGAATCA CGAGAGAGGA CAAATGAACC
AGCAGCAGTT TCAATATT
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wmc551(26a10)
Plate reference : 26a10
WMC locus number : WMC551 Length of sequence : 224
Last updated : Lun 20 sep 1999 at 17:42
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at 5' end, 3' end not located. Bases 181 to 224 show homology to 11g12 bases 414 to 457 (44 in longest run, maxScore = 36). Reverse primer has 6 mismatches to 11g12, forard primer no obvious match. (CA)20 124 to 163.
PCR Comments : 61C anneal, product. 180 bases clean.
Forward primer details :
TAcgcAAcTcAcAcgcATAcc at 21 length 21 bases, Tm 64
Reverse primer details :
cTcgAggcgcgTAAcAgAATA at 173 length 21 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 173 bases.
Length of sequence : 224 Consensus sequence is :
..
GTAACATTAT TGTGGCCCAT TACGCAACTC ACACGCATAC CTTTTCCTTT
TCCTTCTTAT CATTTTTGTC CCTTTTTCAC AGGCCCCTAC CGGCGGCCTG
ATCATCAGTC CTTTCGAAGG ATACACACAC ACACACACAC ACACACACAC
ACACACACAC ACACTTCTGG GCTATTCTGT TACGCGCCTC GAGGGATCCT
CTAGAGTCGA CCTGCAGGCA TGCA
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wmc(26b10.1)
Plate reference : 26b10.1
WMC locus number : WMC Length of sequence : 237
Last updated : Mer 21 Juil 1999 at 11:46
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Sequence read in 1 direction only. Multiple inserts in this clone, this is the first insert. Trimmed to Ssp1 at 5' end and to insert at 3' end. Bases 25 to 48 (complement) show homology to 25f10 bases 196 to 219 (24 in longest run, maxScore = 65). (CA)26 186 to 237. Near duplicate with 25f10, 25f10 has precedence.
PCR Comments :
Length of sequence : 237 Consensus sequence is :
..
AATATTAGAA TCCCGCGGCC AAGCGAAAGT GTTACAGCTA TATAGTCCGG
TTGCCTAGTT CGACGCGCGA TCACCTCCTT GTCGGACCAA GACATTGGAT
AGACAATGAT CAGGCACATT TTTCGCGAAC ACCCCCGCAT TGTATGCGTG
GGGGCTGAAG CCAACGACTA CTATCTTTCG GATTACACAC ACACACACAC
ACACACACAC ACACACACAC ACACACACAC ACACACA
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wmc(26b10.2)
Plate reference : 26b10.2
WMC locus number : WMC Length of sequence : 293
Last updated : Mer 21 Juil 1999 at 12:05
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Sequence read in 1 direction only. Multiple inserts in this clone, this is the second insert. Trimmed to insert at both ends. Bases 88 to 124 show homology to 13b6 bases 193 to 229 (37 in longest run, maxScore = 46). (GT)8 112 to 127, (GA)5 128 to 137, (GT)10 251 to 270. Too difficult to make primers.
PCR Comments :
Length of sequence : 293 Consensus sequence is :
..
GTGGTAGGAA CAAATGCTCC GCCTAGAGCC TGTGTGTGTG AAATGGAGTC
TTAAAAGTGT GGTGTGTGTG TGTGAGAGAG AGAGTGAGAG AGAGAGATGG
AGTCTTAGTT TGTGTGTGTG TGTGTGTGAG AGAGAGATGG AGTCTAAGTG
TGTGTGTGGT GGGGGGGTGC GTGTGTGTGT GTTTGTGTGT GTGAGAGAGA
GAGAGATGGA GTCTTAGTGT GTGTGTGGGG GGGTGCGTGT GTGCGTGCGC
GTGTGTGTGT GTGTGTGTGT CCGGGGGTCC TCTGTGGCGG ATG
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wmc(26c10)
Plate reference : 26c10
WMC locus number : WMC Length of sequence : 459
Last updated : Mer 21 Juil 1999 at 13:46
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 357 to 447 show homology to 11b2 bases 63 to 153 (91 in longest run, maxScore = 92). (CA)12 259 to 282, (CA)5 336 to 345. Too difficult to make primers.
PCR Comments :
Length of sequence : 459 Consensus sequence is :
..
GTCGTGAGTC GATGGCCAAC TTGCAACTGG GGGTTCTCAA CAAACACACC
CCCCTAGTTG CGAGTGGATG GTTGACATTC AACTGGGGAC ACTATGATAA
AAAACACCCC AGTTGCGAGT CGATTATCGA CATGCAACGG GGGACCCTAG
TTTCGAGTCG ATGCTTGACA TGCAACTAGG GACCCCTTGA CGAAAAGACA
CACACACACA CACCTCTAGT TGCAAGTCGG TTATCGACAT GTAATTGGGG
ATCCTCGACA CACACACACA CACACACACA CATCTCCCCT AGTTGTGAGT
TGATGGTCAA CTTGCAACTG GGGCCACGAA TAAAACACAC ACACACGCAC
ACATCTCCTA GTTGCGAGTC GATGGGCAAC TTGCAACTAG GGGTCCTCAA
CAAACACACA CACCCCCTAG TTACAAGTCG GTGGTTGAGA TGCAACTGGG
GGGCCCTTG
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wmc(26d10)
Plate reference : 26d10
WMC locus number : WMC Length of sequence : 251
Last updated : Mer 21 Juil 1999 at 13:50
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Sequence read in 1 direction only, numerous ambiguities. No trimming done to sequence at Agrogene, ends not located. Bases 169 to 248 show homology to 5d12 bases 203 to 282 (80 in longest run, maxScore = 97). (CT)6 29 to 40, (CA)7 72 to 85. Too difficult to make primers.
PCR Comments :
Length of sequence : 251 Consensus sequence is :
..
GTGGNCTACA CACAAACTAA GACTCCATCT CTCTCTCTCT RcNnNNCTNt
NnSnBaSKDt BnByYBtCTC TCACACACAC ACACACCACA CACACTAAGA
CTCCATCTTA CAGACACATG CTCTAGGCGC GAGCATATGT TCCTACCACC
CTTCATCCAA CCTTACCTGT ATGATAAACA ATCACCTTTA TTTACTTGCA
TAACATGGAC AGATTCCACT TTACTTTAGT AGTCAGCAAA CTTATCATCT
G
Go back to index
wmc552(26e10)
Plate reference : 26e10
WMC locus number : WMC552 Length of sequence : 185
Last updated : Mer 21 Juil 1999 at 13:56
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. (GT)25 91 to 140.
PCR Comments : 61C anneal, polymorphic on acrylamide (140-160 bases).
Forward primer details :
AcTAAggAgTgTgAgggcTgTg at 33 length 22 bases, Tm 62
Reverse primer details :
cTcTcgcgcTATAAAAgAAggA at 160 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 149 bases.
Length of sequence : 185 Consensus sequence is :
..
TACAACTGGA GCTAGCTACT ACTACTACGA CTACTAAGGA GTGTGAGGGC
TGTGGTGCTT GGATGTTGCG ATGCTCTGGA GTCTGGTGTT GTGTGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT ATTTCGCAGT
GCTCAGTCCT CCTTCTTTTA TAGCGCGAGA GGGGC
Go back to index
wmc553(26f10)
Plate reference : 26f10
WMC locus number : WMC553 Length of sequence : 594
Last updated : Lun 20 sep 1999 at 17:46
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to Ssp1 at 5' end and to insert at 3' end. Bases 402 to 489 show homology to 4f12 bases 162 to 249 (88 in longest run, maxScore = 114), reverse primer has 2 mismatches to 4f12, no obvious math for forward primer. (CA)24 441 to 488.
PCR Comments :
Forward primer details :
cggAgcATgcAgcTAgTAA at 212 length 19 bases, Tm 60
Reverse primer details :
cgccTgcAgAATTcAAcAc at 549 length 19 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 356 bases.
Length of sequence : 594 Consensus sequence is :
..
AATATTGGTG CAGCGGCGGC GGTGTGCAGG GACATCAACG GAGTCTTTTG
TGTGCGTCGA CAATCACTTT TAAATATATT CATAACCCTG TTACACTTGA
AGCTTTGGCG GTACGTGAGG CGCTAGCAAT TGCAGAGGAT TTATATTTAC
AAAAAATTCA AGTGGCGTCT GATTGCAAGA TGGTTGTGAT GATATCAAGC
GGGATCATCG GCGGAGCATG CAGCTAGTAA ACATGAAATC ACAAATTGTT
CGCGTCTTTT TATCGCTTGT AACATTATCC ACAAATTTAG GAGCTCAAAT
TTCGAGGCTC ACAATCTCGC TAAACATGCT CTTTCACTTG GGTTCGGTTG
CCATGTTTGG TTAGGCCAAC CTGAAGATTT GAATTTTATC TCTGTAAATG
CTGTGACAGT TTGAATAAAG CATCGTGAGA ATGTCTAAAA CACACACACA
CACACACACA CACACACACA CACACACACA CACACACACC ACACACACAC
CCACACATCG CAGTGGCTGG AGCGGCCATG TTTGGCCGCG GCGGCGCAGT
GTTGAATTCT GCAGGCGCAA GTGCCTTCCC TTTTTTTTCC TGGT
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wmc(26g10)
Plate reference : 26g10
WMC locus number : WMC Length of sequence : 218
Last updated : Lun 5 juil 1999 at 17:23
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 126 to 136 show homology to 12g2 bases 126 to 136 (11 in longest run, maxScore = 20). No substantial microsatellite.
PCR Comments :
Length of sequence : 218 Consensus sequence is :
..
CCCTCTAGGT TTCCACCGCC GCCGCTTCCC CTCTACTATC GGCACGCTCC
GCCTCCTTTC CTCTCCCCCG CAACTCCGCT GTCCTCCGCG CCGCCGCCTC
GCCGGACCTC CGCCGCCCGA CCTCGCCTCC TCCTCATCCG TAAGCTCCCT
CTGCCCCTCC TTCCCCGCGT CTTCTTCATC GACGCAACCC AGGGCATAGT
CGACCAGCCC CGAGTCTT
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wmc(26h10)
Plate reference : 26h10
WMC locus number : WMC Length of sequence : 276
Last updated : Lun 5 juil 1999 at 17:23
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Ssp1 at 3' end. Bases 73 to 91 (complement) show homology to 12g11 bases 106 to 124 (19 in longest run, maxScore = 62). No substantial microsatellite.
PCR Comments :
Length of sequence : 276 Consensus sequence is :
..
GCGACAGTGG ACGTGCATCA CTTGTATATA AATCAATATC TACTTCGTAT
CGTGGCCAAA GATACAATAT CGATTCAACG CTATAAAGAT TAGACACTCA
CATATCGCAT TTTTATTCCA AATAGTCCTT TTCAATTGTG CATGCCAAAG
TTTGAGTGAT GTTTCATCAA ACAACCACTG TAGTTATCAT GTGCATGCAC
CATTGTTAGT TTTGCATTCA AATCCATTAG TCTTGGATGA TTTAAGGTTC
TATTATGAAG TAACATATGT AATATT
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wmc(26a11)
Plate reference : 26a11
WMC locus number : WMC Length of sequence : 171
Last updated : Mer 21 Juil 1999 at 14:19
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 39 to 76 show homology to 11d7 bases 106 to 143 (38 in longest run, maxScore = 55). (GT)6 68 to 79, (GA)8 118 to 133, (GT)8 100 to 115. No room for primers.
PCR Comments :
Length of sequence : 171 Consensus sequence is :
..
GTGATTGTTT ATCATACGGG TAAGGTTGGA CGAAGGGCGG TAGGAACAAA
TGCTCCGCCT AGAGCATGTG TGTGTGTGTC TTGGGGTGTG TGTGTGTGAG
TGTGTGTGTG TGTGTGGGAG AGAGAGAGAG AGAAAGATGG AGTCTTAGTG
TGTGTGGGGG GTGCGTGCGT G
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wmc(26b11)
Plate reference : 26b11
WMC locus number : WMC Length of sequence : 6
Last updated : Mer 25 aož 1999 at 18:02
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : No overlap between forward and reverse sequences (patchy homology). Ttimmed to insert at 3' end, 5' end not located. Bases 190 to 226 show homology to 7a2 bases 171 to 207 (37 in longest run, maxScore = 157). No substantial microsatellite.
PCR Comments :
Length of sequence : 6 Consensus sequence is :
..
TACACACATT TCTCTCCTTA GGTTTGTTTT CTCTCAATAT CTGACACACA
CACAGCACAC AGCACACACA CACCCCTCCC CCGAGCACAC AATTCATCCC
CATCCAAGGT TATATGGCGA CCACTCTCGC TTGTGCTTCT CTGCACCCCA
GCATGCACAA CACCTCAATC ATCAAAGAGG GCATCGAGGA GATCGAAGAC
GGCGACCACA CTGCGCTAGA GAATGCGGGG CCAYTTTGGA AGCAGGAGTA
GTGTACGACG GCAGACCGAT CCCTCTCCCA YCCYTATATN TGTGCACAAA
ATTACAATCC CTCTCTCCCC CGCATAAATT TATCAATCCC TCAACCCACG
AGAGCCTTCC CCTCTCGTCC ATGTTTTTCC AGCTCTCTCA TCAAACCCGT
TGTCTC
(break)
CCCCAGCATG CACAACACCT CAATCATCAA AGAGGGCATC GAGGAGATCG
AAGACGGCGA CCACACTGCG CTAGAGAATG CGGGGCCATT TGGAAGCAGG
ATGATGTGAC GACGGCAGAC TGACTCCTCC CCCCACCCTC TCTCTCTCGC
ACAAAATTAC CAATCCCTCT CTCCCCCGCA TAAATTTATC AATCCCTCAA
CCCACGAGAG CCTTCCCCTC TCGTCCATGT TTTTCCAGCT CTCTCATCAA
ACCCGTTGTC TCTTCTCCTT CCACGTGTAC AGAATCCGGA TGCACACGCC
CYCATGGATA TTACCGCCCC ATCTTTCTCA CAGACCTAAC TTCTTCCTCT
CTCTTTCCCT CTCTATCTCC CTCTTTCTAT TTCGTCAGGT TTGTCTCCTA
CCCTCTCGTC CACATACATA CAATCTTTCC CGCCCTATCT GCTCCATCTT
CGTAAGCTCT CTCTGCACGT TTCATTCACA CATTGGGATA TGTTCAAAAT
TGTCACATCC TAGTTAGTTC ATGCATTAGA GTGTTGCATC ATGTCTACAT
TTCGCTGAAA CCTGAAATGG GATGCCAGAA ACCCCCAGCA TA
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wmc554(26c11)
Plate reference : 26c11
WMC locus number : WMC554 Length of sequence : 352
Last updated : Mer 21 Juil 1999 at 14:50
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 96 to 118 show homology to 2c4.2 bases 272 to 294 (23 in longest run, maxScore = 65). Primers have no obvious match to 2c4.2. (GT)6 9 to 20, (GT)5 65 to 75, (GT)8 97 to 112, (GT)7 233 to 246, (GT)6 305 to 316.
PCR Comments : 61C anneal, product (300 bases).
Forward primer details :
ggATAAccgATTTgcAAcTAcAg at 42 length 23 bases, Tm 62
Reverse primer details :
TTATcgAcATgcAATTgggA at 324 length 20 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 302 bases.
Length of sequence : 352 Consensus sequence is :
..
TGTGTTTTGT GTGTGTGTGT GAAGGGTCCC CAATTACATG TGGATAACCG
ATTTGCAACT ACAGGTGTGT GTGTGGGTGT CTTTTTGTCA AGGGATGTGT
GTGTGTGTGT GTTATTTTCA TCAAAGTGTC CCCGGTTGAA TGTCAACCAT
CGACTCGTAA ATAGGGGTGT GTGTGTATTT TTTGAGAACC CCCAGTTGCA
AGTTGACCAT CGACTCGCAA CTAGGGGGGT ACGTGTGTGT GTGTGTTATT
CGTGGCCCCC AGTTGCAAGT TGACTATCAA CTCACAACTA CGGGGATGTG
TGTTGTGTGT GTGTGTCGAG GGCTCCCAAT TGCATGTCGA TAACCGAATT
GC
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wmc(26d11)
Plate reference : 26d11
WMC locus number : WMC Length of sequence : 300
Last updated : Mer 21 Juil 1999 at 14:50
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Sequence in 1 direction only. No trimming done to sequence at Agrogene, ends not located. Bases 70 to 110 show homology to 5c12 bases 173 to 213 (41 in longest run, maxScore = 31). (CAA)22 52 to 117, (CAA)34 142 to 24. No room for primers.
PCR Comments :
Length of sequence : 300 Consensus sequence is :
..
TAACACCAAC AGCAKCATCA GCAWCAGCAA CAGCAACAGC AACAGCAACA
GCAACAACAA CAACAACAAC AACAACAACA ACAACAACAA CAACAACAAC
AACAACAACA ACAACAACAG CAGCAGCAGC AGCAGCAGCA CCAACAACAA
CAACAACAAC AACAACAACA ACAACAACAA CAACAACAAC AACAACAACA
ACAACAACAA CAACAACAAC AACAACAACA ACAACAACAA CAACAGCAAC
AGCAAGAGCA GCYAKHCCTA CGCGCCCCKT RGGGGAGCCT CCTATTAGGC
Go back to index
wmc(26e11)
Plate reference : 26e11
WMC locus number : WMC Length of sequence : 176
Last updated : Lun 5 juil 1999 at 17:23
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to Ssp1 at 5' end and to insert at 3' end. Bases 135 to 156 (complement) show homology to 6h6 bases 517 to 538 (22 in longest run, maxScore = 19). No substantial microsatellite.
PCR Comments :
Length of sequence : 176 Consensus sequence is :
..
AATATTGTGA GACTTTTGAA ATAGTTTGCC AATTTTATAA ATTAAAAAGG
CATTTAATTT ATTGCTTAGG TCACTGCTTT AAGTAGTTTA GGCCACTCAA
ACCCTTTGCA AAAATGTTGG TTCACCACCA ATCTTCGTCC GTGGCCTTCT
TCTTGGCGGC GGCGGCGGCC ATGGTG
Go back to index
wmc(26f11)
Plate reference : 26f11
WMC locus number : WMC Length of sequence : 288
Last updated : Mer 21 Juil 1999 at 14:52
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at 5' end and to Ssp1 at 3' end. Bases 81 to 172 show homology to 25f8 bases 98 to 189 (92 in longest run, maxScore = 146). (CA)16 75 to 106. Duplicate with 25f8, 25f8 has precedence.
PCR Comments :
Length of sequence : 288 Consensus sequence is :
..
CACACTTGGA TCGAAGGATT TGTGATGTGA GTATATTTGT TCAGAAATAC
ACATTTAAAT TTGGTTAGTT TCTCCACACA CACACACACA CACACACACA
CACACATGCA TAGAACTTTA GCATGTTCTT TTCTTCACGT AATTGTGTTA
ATAACAGGTA AATCATAACT TTGTGTACTG ATGGATGCAT AACATAATAC
GAGTACTTGT TACTTGAGTT TTGTTGACAT TCCTTCTCCA TGATGTTGTC
CTGTCTTAAG TTGAGTTAGG TCAGTGGGTT AGAATATT
Go back to index
wmc555(26g11.1)
Plate reference : 26g11.1
WMC locus number : WMC555 Length of sequence : 417
Last updated : Mer 21 Juil 1999 at 14:58
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Multiple inserts in this clone, this is the first insert.Trimmed to insert at both ends. (GT)12 344 to 367.
PCR Comments : 61C anneal, product (280-300 bases).
Forward primer details :
gAAgTcATgATTgccTTcTgcc at 88 length 22 bases, Tm 65
Reverse primer details :
cgTgTTcAgAAAcAAAAgcgTg at 387 length 22 bases, Tm 65
Expected size of amplified fragment (Chinese Spring=) 321 bases.
Length of sequence : 417 Consensus sequence is :
..
TCGTCCGTGC GGCCGAGCGC CGCGCCTCCT CCTCAAGCTC CTCTTTCTGT
GCCGCCCCGC CTGCATCTGC CCACCCGCGC CCCCGGAGAA GTCATGATTG
CCTTCTGCCA AAGCTGCTGG ATCGAATGGC CGGACCGCCG CCACGACTGA
ACCTCAACCT TCTGGACGCG ATGGGCAGCG GCCATGGATG CAGCACCTCC
GACCTCTCGC TCGCCGCCAG ACAGGACCTC CGCCAACATC TCATTCATCC
TGATATTCGC TGCCTTTGGC ACGGCCACCA CTGGCTTGCC TTCCTTGGAT
CAAAGAATTA TGAGCTCCCC ATACACGATT GAAGCGCCTA CAGGTGTGTG
TGTGTGTGTG TGTGTGTCAT TGTTTTAACT TTTGCCCACG CTTTTGTTTC
TGAACACGTG AATTTCT
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wmc556(26g11.2)
Plate reference : 26g11.2
WMC locus number : WMC556 Length of sequence : 233
Last updated : Lun 20 sep 1999 at 17:49
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Multiple inserts in this clone, this is the second insert. Trimmed to insert at 5' end, 3' end not located. Bases 164 to 207 show homology to 10e2 bases 179 to 222 (44 in longest run, maxScore = 49). No obvious match for forward primer to 10e2, reverse primer will match 10e2. (GT)8 113 to 128, (GA)7 129 to 142, (GA)9 145 to 162, (GA)4 165 to 170.
PCR Comments :
Forward primer details :
cAcTTTTTgcAcTTTTcgAcTT at 50 length 22 bases, Tm 60
Reverse primer details :
AgATggTTgTTgTgTTAcggAT at 176 length 22 bases, Tm 60
Expected size of amplified fragment (Chinese Spring=) 148 bases.
Length of sequence : 233 Consensus sequence is :
..
ACTTATAAGT TGGGTGACTT ATAAGTTGGG TCCGTTTGGC AAAATAAGTC
ACTTTTTGCA CTTTTCGACT TATAAGTTGG TGACTTATTT GGAACCAAAC
AGGGCCTTAC TTGTGTGTGT GTGTGTGTGA GAGAGAGAGA GAGGGAGAGA
GAGAGAGAGA GACAGAGAGA GGAGCATCCG TAACACAACA ACCATCTCTC
TCGATTCATC CGTCCCTCGC ACGGTCGCAT GCA
Go back to index
wmc(26h11)
Plate reference : 26h11
WMC locus number : WMC Length of sequence : 495
Last updated : Lun 5 juil 1999 at 17:23
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to Ssp1 at 3' end, 5' end not located. Bases 167 to 181 (complement) show homology to 7f9 bases 141 to 155 (15 in longest run, maxScore = 19). No substantial microsatellite.
PCR Comments :
Length of sequence : 495 Consensus sequence is :
..
TCCTCGGCCG CCGCCGCCAG GAAACCGCCG TCCCTGTTCC ACTCGATCCG
CCGCCGCTGC CTCCTGTGCC ACTTAATCCG CCCACCTGCT TCCAGCACCC
AGGGTTCCAC CAAAATTGCG GTCGCCACCG CTCTTGTCAC CGCAGCCGCC
GCCGCCCGAC GCCCAACTCG CTGTCATGCT TTCGCCGTCG AGATTTGGTG
GGGAAAATGG AGAGAGAGGG CGGGATTTGG AAAGGAAGCC GAGAAAAGGG
GAAGATCGAT GTGAACCTGG CAAAATGGGC TGCTGTAGCC CTGCCGGCAC
GATAGCGGCC GCCTGTAGGG CCCCTCACGT GGTTAGATGG GCTGTGCCTG
CCATCATGGT GAGTACAGAA ATAAGTTATT TATACATACA ATAAAAAAAC
GACGGGTTTG TCAAACAAAA TAGAAAAACA TTAAGCCACA TAACACGCCA
TAGAGCCAAC GAGCTGACAT GACTTATTTT CATCTGTGTA ATATT
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wmc(26a12)
Plate reference : 26a12
WMC locus number : WMC Length of sequence : 6
Last updated : Lun 5 juil 1999 at 15:54
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Only tiny insert with no microsatellite. No sequence provided 18.5.99.
PCR Comments :
No sequence available for this clone
Go back to index
wmc557(26b12)
Plate reference : 26b12
WMC locus number : WMC557 Length of sequence : 497
Last updated : Mer 21 Juil 1999 at 16:04
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. (GCC)6 218 to 235.
PCR Comments : 61C anneal, polymorphic on acrylamide (140 bases, 280-320). Gives nulls for 140.
Forward primer details :
ggTgcTTgTTcATAcgggcT at 44 length 20 bases, Tm 64
Reverse primer details :
AggTccTcgATccgcTcAT at 323 length 19 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 298 bases.
Length of sequence : 497 Consensus sequence is :
..
TGGGTGGGCT TTACTGTCAG TGACAGCGAA GCTGTGCGCG TCCGGTGCTT
GTTCATACGG GCTCAGGGGC CGTGCCACCG CCTGTAAAAC TTGGTGGCCG
CCGAGGGCAT TTTCGTATTT TCGCGTCCGT AGAGAGGGGG GTCGATAGGG
CACGCACAGC GTCGTCCTCT CTCCTCATCT CCTCACTTCC CCCGCTCCTC
ATTCCCGCAT CCTCCACGCC GCCGCCGCCG CCGCCTCCCG TCCTCCCGTC
CCCTGGCGCA GCCACCATGC CTTCTCCCTC TATCCTTTCC TCCTCCCATC
CCGTTCGCCA TCACAGGGAG GAATGAGCGG ATCGAGGACC TGCCGCTCGC
GCCGCCGCTT CTCCATCGAG GTTGCGCGTA CATAATTAGG AGGAGAGGAT
GCTGCCGCTG CTCTTCTGGG AGGAGCACGC CGTCTACAGG AAAAGGCCAG
GCATCCGCGA CGCCGACCGC AGGCGCCGCC TCCGCAGCGA CGAGTTC
Go back to index
wmc(26c12)
Plate reference : 26c12
WMC locus number : WMC Length of sequence : 390
Last updated : Mer 21 Juil 1999 at 16:07
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 304 to 330 show homology to 20d8 bases 433 to 459 (27 in longest run, maxScore = 105). (GT)4 343 to 350, (GT)8 354 to 369, (GC)7 372 to 385. No room for primers.
PCR Comments :
Length of sequence : 390 Consensus sequence is :
..
GGAGAAGAGA CAACAGGTTT GATGAGAGAA CTGGAAAACA TGGACGAGGG
GGGAAGGATC TCGTGGGTTG AGGGATTGAT AATTTTGTGT GGGAGAGAGA
GGGATTGGTA ATTTTGTGCG GGGGAGAGAG GGAGGGGGAG GAGTCAGTCA
GCCGTCGTCA CATCATCCTG CTTCCAACTG GACCCGCATT CTCTAGTGTA
GTGTGGTTGC TGGTCTTCGA TCTCCTCGAT GCCCTCTTTG AAGATTGAGG
TGTTGTGCAT GCTGGATTGT AGAGAAGCAC AAGCGAGAGT GGTCGCCATA
TAGCCTTGGA TGGGGATGAA TTGTGTGCTC GGGGGAGGGG GAGTGTGTGT
GCGGTGTGTG TGTGTGTGTG GGCGCGCGCG CGCGCGTGTG
Go back to index
wmc(26d12)
Plate reference : 26d12
WMC locus number : WMC Length of sequence : 241
Last updated : Mer 21 Juil 1999 at 16:14
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Sequence in 1 direction only. Trimmed to Ssp1 at 3' end, 5' end not located. (CA)20 43 to 82, (CA)12 84 to 107. Too difficult to make primers.
PCR Comments :
Length of sequence : 241 Consensus sequence is :
..
CCACCTCCCT CCACTGGCAC AAGAGCTCAS ACCCCCTGRT AACACACACA
CACACACACA CACACACACA CACACACACA CAACACACAC ACACACACAC
ACACACAACA ACAATAATAA TTTAAGGAGT TTTTTTATTA CAATATACAA
ACTAAATTTA GCACAGTGTA AACATGCTTT TACAATAATA TGCATTCCAT
TAATGTAACA AGAAATGTTA TGACTAATGT TCAGAAATAT T
Go back to index
wmc(26e12.1)
Plate reference : 26e12.1
WMC locus number : WMC Length of sequence : 177
Last updated : Mer 21 Juil 1999 at 16:16
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Multiple inserts in this clone, this is the first insert. Trimmed to insert at both ends. Bases 41 to 75 (complement) show homology to 25f5 bases 114 to 148 (35 in longest run, maxScore = 76). (CA)10 14 to 33. Near duplicate with 25f5, 25f5 has precedence.
PCR Comments :
Length of sequence : 177 Consensus sequence is :
..
CTCCTCCTTC AAACACACAC ACACACACAC ACATACACAC ACACACACAC
TCGCTAGTTG TGCCTCTGTG CCTACTGCGC ACACTCTCGA TACATCTATC
TCTCCCTCCC CGCACCCCAA CAATGACAAC AGAAGGGTGA TAACTCAATC
TCATTGTAAT CTGTCAATTG GTTTCTC
Go back to index
wmc558(26e12.2)
Plate reference : 26e12.2
WMC locus number : WMC558 Length of sequence : 446
Last updated : Mer 21 Juil 1999 at 16:25
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Multiple inserts in this clone, this is the second insert. Trimmed to insert at both ends. (CA)13 101 to 126.
PCR Comments : 61C anneal, product (120-140 bases).
Forward primer details :
TccgTTTggATTggATgAcT at 69 length 20 bases, Tm 62
Reverse primer details :
TgggTccAAAgAAgcAgAgA at 190 length 20 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 141 bases.
Length of sequence : 446 Consensus sequence is :
..
AGTAGTACCC TAGCGGCCCA CAGTGCCGCC CGAGTATCAG CTTCAGGCGC
AGCACTGCCG CAGAATGCTC CGTTTGGATT GGATGACTGG TGAAAATCGA
CACACACACA CACACACACA CACACATATA CAGTCTTTCA TTCCTACAAC
TTTCTTTCAG GTGCAGCCTA ACTCGCCTCT CTAGGAACCT CTCTGCTTCT
TTGGACCCAG CGAGGCTCCA CCCTCTCCGT CCGCCGCTGC CGTTGGAGGA
GGGGGGGTGG GCTCCTGCTT CTCTTTCAGC TGGTCTGTAG ATTTAGGGTC
TCGTCTTTGT CTAATAGGTA GTAACCCAGT TTGGTGAGGT TGGTGCTTCG
TCGACTAAGA TGGTTCGGTC TCTCCTCACC ACCACAACGT TCTATCCAGC
AGCACCATTG AGCTGATGAC CTCGTTTGCT CGCCATTCTA ATCACC
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wmc(26f12)
Plate reference : 26f12
WMC locus number : WMC Length of sequence : 6
Last updated : Lun 5 juil 1999 at 15:54
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : No sequence available after several attempts.
PCR Comments :
No sequence available for this clone
Go back to index
wmc(26g12)
Plate reference : 26g12
WMC locus number : WMC Length of sequence : 341
Last updated : Mer 21 Juil 1999 at 16:28
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Trimmed to insert at both ends. Bases 210 to 243 (complement) show homology to 10h7.2 bases 105 to 138 (34 in longest run, maxScore = 65). (CA)8 124 to 139. No room for primers.
PCR Comments :
Length of sequence : 341 Consensus sequence is :
..
CACTACACAC ACACGGACTA CACTACACAC ACACGGACAC ACACACACTA
CACACACACA GACACACACA CACACATACA CACAGACACA CCACACACAC
ACATACACAC AGACACACAC AAACACACAC ACACACACAC TACACGTACA
CTACACATGC ATGTACGTAC GTACACACAT ATACACACAC TACACACACA
CACACATATT TTTTTTACTT ATTTTCTGTT TTCTAATGTT TAGTTGAATT
AGAACTATCT AGTTTATTTT TAGATTGTTA GAAATGTTAT GTTAGATTGA
TCTAGTTTAT TTTTAGTAAA TGCTTTGTTG AACTAGTTGA A
Go back to index
wmc(26h12)
Plate reference : 26h12
WMC locus number : WMC Length of sequence : 291
Last updated : Lun 5 juil 1999 at 17:23
Owner : Momont Date at Agrogene : 18.5.99 Public Domain : Yes
Comments : Bases 154 to 163 show homology to 10e12 bases 155 to 164 (10 in longest run, maxScore = 26). No substantial microsatellite.
PCR Comments :
Length of sequence : 291 Consensus sequence is :
..
CCGCCGTTGT GATAGCCGCC GCCACCTCCT TGATTTCCAC CATTACGGGA
TCCGTTGCCG CCGCCGTTCT TGGGAGAATA GCGACCGCCG CCGCCACGAC
CCCGAGAGGC CGCGTTAGCA GAGGATTTGA AGGAGCCAGC CCCGGTGCCG
TGGAACATCT CCACGCGCTG ATCAAAGTTG GACACCATCG CGAAGAGATC
GTCGACAGAA ACTGTATCAG TTCGGACGTC AAGGGCAGAG ATAATGGGCT
GGTAGTCCAT ATCAAGCCCG GCTATGATGT GAGAAACGAG C
Go back to index