Wheat microsatellite WMC 25/06/01
wmc79(6h7)
Plate reference : 6h7
WMC locus number : WMC79 Length of sequence : 218
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR104. Trimmed to insert. Complex microsatellite (TC)(CA)104-164. 5' side of microsatellite has a match to 2e10 etc.
PCR Comments : 61C anneal, product;
Forward primer details :
cATcAATgcATATggcTgAAAT at 55 length 22 bases, Tm 61
Reverse primer details :
AAAAgTTgTcATgAgcgAAgAA at 185 length 22 bases, Tm 61
Expected size of amplified fragment (Chinese Spring=) 152 bases.
Length of sequence : 218 Consensus sequence is :
..
GCAAGTTCAG TGTGCTATGA TGTTCTATAT GGTGTTCAAG TTTTTACTGA
GCATCATCAA TGCATATGGC TGAAATATGT AGTTACGAGC ATCGACCGAT
GGGTCTCTCT CTCTCTCACA CACTCACACA CACAAACACA CACACACATG
CACACACACA CACAAGTGGG ACCCGTTGAA TTATTTCTTC GCTCATGACA
ACTTTTAATT AGGTTCCA
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wmc80(6a8)
Plate reference : 6a8
WMC locus number : WMC80 Length of sequence : 825
Last updated : Wed, Aug 20, 1997 at 1:02 pm
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR105. Multiple inserts (2) joined buy linkers at 311-324. End of second insert trimmed to Rsa1(CA)14 159 to 186, (CA)8 211 to 226, (CAA)14 455 to 496, (CAA)10 524 to 553, (CT)9 141 to 158. Primers are for second insert containing (CAA) microsatellite. First insert Microsatellite at 3' has similar core to 4g10. First insert matches 4d4 (complement). Band is too big (~400 bases)
PCR Comments : 61C anneal, product; 51C anneal, product;
Forward primer details :
gTcATccATTAAATgcAgcg at 401 length 20 bases, Tm 61.0
Reverse primer details :
gTcATTTcggAcAAATcAgg at 604 length 20 bases, Tm 60.0
Expected size of amplified fragment (Chinese Spring=) 223 bases.
Length of sequence : 825 Consensus sequence is :
..
GTGAATCCTC GAGGCGCGTG GATACACACT AAGACTCCAT CTCTCTCTCT
CACACCCACA CAAACACACA CACACACACG CACACCCACC CACCCCCCAC
ACACACAAAA CACACATACA CACACACACT AAGACTCCAT CTCTCTCTCT
CTCTCTCTCA CACACACACA CACACACACA CACACAAAAA CTTCATCTCT
CTCTCTCTCT CACACACACA CACACAAACA CACACATATG TTTACTTTAG
TAGTAAGCAA ACTTATCATC TTTACCCTTA TAAAAAAACG AGTTGGCAAT
GATGGTGTTA GTCCACGCGT GGACTACAAG ACACCATTTG ACTTATTCAA
CACTTGATTT AAAAAAAAAG TTGTTACTTC TAGTGCTCAC TATTCAGCAA
GTCATCCATT AAATGCAGCG ACAAAAAGTT GTTACTTCTG GTGTAACAAT
TCAGCAACAA CAACAACAAC AACAACAACA ACAACAACAA CAACAACGAC
AACGACAACG ACAACAACAA CGACAACAAC AACAACAACA ACAACAACAA
CAACCGTTTA TGGTTGTAGG GGGTGGGCTA TTTATAGCCA CTTGGCAACC
CGACCTGATT TGTCCGAAAT GACCCTGGGT CACTAAGGAA CTGACACGTG
TTCCAACGGT CAGATTTGAA ACTCACACGG CAACTTTACT TGGGCTACAA
GCAAAGCTGA CTTGTCCGAC TCTGGACAAG ATTCGCTCTC AAAGTCTTCA
CTCGAAGACA TGGATTTTGT TTAAGCATCA CTTCAGTCAT TCTGACTGGT
TCTCTTGGAC CCCACTTAAC AGTAC
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wmc81(6b8)
Plate reference : 6b8
WMC locus number : WMC81 Length of sequence : 222
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR106. Trimmed to Rsa fragment. (CA)8 93 to 108, (CA)20 119 to 158.
PCR Comments : 61C anneal, product; 51C anneal, product;
Forward primer details :
AcAAcAgTcTgcTccAgccAAg at 3 length 22 bases, Tm 66
Reverse primer details :
cgcAcTcgcATgATTTTccTAc at 169 length 22 bases, Tm 66
Expected size of amplified fragment (Chinese Spring=) 188 bases.
Length of sequence : 222 Consensus sequence is :
..
GTACAACAGT CTGCTCCAGC CAAGCACACT ACACACCATC TCTCTATAGG
AGTAGGTCAA TGTGTCGCTC TCTCTAACAC ACACATGTTA AACACACACA
CACACACATG CTATTAAACA CACACACACA CACACACACA CACACACACA
CACACACAGG TTCATAGAGT AGGAAAATCA TGCGAGTGCG AAGCCACATG
AAGTGACATA CAAATGGAGT AC
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wmc(6c8)
Plate reference : 6c8
WMC locus number : WMC Length of sequence : 90
Last updated : Wed, Aug 6, 1997 at 9:53 am
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR107. Trimmed to insert. No room for primers. Matches part of 6g2.
PCR Comments :
Length of sequence : 90 Consensus sequence is :
..
CGGCCGGCGG ATCTTTTTTT CATACACACA CGCATACACA CACATACACA
CACACTACAC ACACACATAC ACGCATACAC ACATACACAC
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wmc82(6d8)
Plate reference : 6d8
WMC locus number : WMC82 Length of sequence : 486
Last updated : Tue, Aug 26, 1997 at 4:51 pm
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR108. Trimmed to Rsa1 at 3' end.(CA)17 348 to 381. Redesign primers? Duplicate of 3C10. Bases 196 to 221 show homology to 12c6 bases 207 to 232 (complement) (26 in longest run, maxScore = 69).
PCR Comments : tested 61C anneal, no product; tested 51C anneal, no product;
Forward primer details :
gcAAAcAgcccATgAcATAAAT at 39 length 22 bases, Tm 63
Reverse primer details :
ccTgAgTTTTcgcATAAAccAA at 383 length 22 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 366 bases.
Length of sequence : 486 Consensus sequence is :
..
CCGTCGGTCT TGTCGGTCTC GGTAACGTGG TTGTACTCGC AAACAGCCCA
TGACATAAAT GGTAATGCAT GGCAGTAACA GGCATCTTTA GTGGAATGCG
ATGAGGTGGT ATGATCATGT ATATGCATCA GGTTAAAGAA TTACTTTTGA
AGAACAGGTT ACAGATATCA TAATCTGTGC TAAGGGTTGA ACACACCGGG
TTCACCCTAT ATGCCAAGTC ATCGGACTTG TCATAATCTT AAGGTATTAA
TGAGGGCTAA ACCATCCGGG TTTACCCTAT ATGTCCAGTC ACCGAATTTG
ATCATATTAT TGTGATTATC ATGATTATAA CGACACCTTT TTTACACCAC
ACACACACAC ACACACACAC ACACACACAC ACTTGGTTTA TGCGAAAACT
CAGGGCGTAG TTTAAGCAGC ACCACCCAAC TGTCCTTGAC CGTGGACATG
ACTATTCGAA TAGTTTACAC TCTGCAGAGG TAGTAC
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wmc(6e8)
Plate reference : 6e8
WMC locus number : WMC Length of sequence : 312
Last updated : Lun 9 oct 2000 at 14:43
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR109. Trimmed to insert. No substantial microsatellite (CGG)5. Bases 244 to 285 show homology to TW2f05.3 bases 71 to 112 (42 in longest run, maxScore = 50).
PCR Comments :
Length of sequence : 312 Consensus sequence is :
..
CAACCTGAGT ATATATGGGC ATCAGCTGCT TCCTCCGAGC AGCCATGCTC
CTCCTGATGG TCTCCGCCGC CGCCGCCGTT TCCCAAGGGC TAGGGCTAGC
ACTAGTTTCT TTGAGGAGTT TAGCATTGAG GCTGATCAAC TCAGGGTCCA
GCCTTAGCAT ACTCTCTTCC AATTCATTTG GCTTGAATTT GATCTCAATG
AGTCCTGGTG CCTCAAGGAC ATTCCCTCTC GCAGTCCTGT TTGTTTTTGT
GGATGAGGAG TTGAGGAGGA ATGTGCAGTC ATCTTGGCAT ACTAGTATTT
ATAACCGAGT AC
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wmc83(6f8)
Plate reference : 6f8
WMC locus number : WMC83 Length of sequence : 268
Last updated : Thu, Jun 11, 1998 at 11:28 am
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
PIC Value : 0.85
Comments : AGR110. Trimmed to insert.(GT)28 32 to 87. (4 polymorphic loci?).
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
TggAggAAAcAcAATggATgcc at 7 length 22 bases, Tm 68
Reverse primer details :
gAgTATcgccgAcgAAAgggAA at 145 length 22 bases, Tm 68
Expected size of amplified fragment (Chinese Spring=) 160 bases.
Length of sequence : 268 Consensus sequence is :
..
GTACAATGGA GGAAACACAA TGGATGCCGT TGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGCG CGCGCGTGTG
TGTGTGGGCG CGTGTGTGTG TGTGAATTGA CTAGTTAGTA ATACTTCCCT
TTCGTCGGCG ATACTCAAGT ATTCAAAAAC ATTGTGCATG TGTCTTTTTT
AGATAAAGAA AGAACATACT CTTTTATTAA TACATATGTG ACCTTGTCCC
TTACTCCCTC ATTTTGAG
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wmc84(6g8)
Plate reference : 6g8
WMC locus number : WMC84 Length of sequence : 641
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR111. Trimmed to insert at 3'. (GT)27 296 to 349. (2-3 loci, one polymorph)
PCR Comments : 51C anneal, polymorphic product on agarose; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
TgAcgAcTTcgTAgTAgTgcTT at 201 length 22 bases, Tm 59
Reverse primer details :
gAATgcTcTcATcATgcAcAAc at 511 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 332 bases.
Length of sequence : 641 Consensus sequence is :
..
AATTCTGCTG AAAACGGTGT CAGTCTGGGT TAGTTCCATT CAAATCATGC
AAGTTAGAGT CCAAAACAAG GGCAAAAGTG TTTGGAAAAG TAGATACGAC
GGAGACGTAT CATTACCTTG CAGAAGACGC CGCCTTGTAG CCCATTGTTC
GTCATACAGG GCTTCCCCTC TTCGCGGTGG CTCTCCAGCA TTGAGGGCCC
TGACGACTTC GTAGTAGTGC TTAGGTTTCA TCTGATGTTT GTTAGGGGTT
TTTTGGGGCG GTGTTGCTGT TTTCAGCGTC CTTGTATCCA GCCTAGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTN
TGTATTGGCT GGTTTCGGCT TGTTCGATGA TGGTTGCTTT ATATATAAAG
CGGGGGAACC CTTTTTCGTC AAACAACATG CCTATAATAT AATATGATCC
AACACAGTGA TTGAAAAAAG ATTACTAAAG TATGAAACCA TTGCTTGGCT
TGTCATCGGG GTTGTGCATG ATGAGAGCAT TCTTGTGTGA CGAAAATGAA
ACATGACTAA AATATATGAT TTTGTAGGGA TGAACCTTCT TTGGCCTTGT
TATTTTGAGA AGACATAATC GCTTAGTTAG TATGCTTGAA G
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wmc(6h8)
Plate reference : 6h8
WMC locus number : WMC Length of sequence : 407
Last updated : Thu, Jun 11, 1998 at 11:28 am
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR112.(CT)18 371 to 406. No room for primers.
PCR Comments :
Length of sequence : 407 Consensus sequence is :
..
TTTGCTAGAG TGCCCAGAAG GCCAAAGATC TGCTGCAGTG CCAGTGACAG
ACACCAGAGC AACTTCATCA GCACCAGCAA CAGCTTCAGT GCCACCAGCT
CCAGTAGCCA CTCCACCAGC TCCATCAACC TCAACGGATG CCTTCATCCT
TGTAGTCATT TNTACACCAC CACATCNAGA CCNAGACTGA GAGTCGATTT
AGCACTATGC ATTTTTTATG AACTTTTTGG TAACTTGTTG CCAAAGGGGG
AGAAAATGTA TAGATCATAG GCTCCGAGAG AGAGTGTTGC TTTTGTTCTG
ATCTAGGTTT TNTCTCATAG CTTAATGGAA AGAGTCCCAA AGTTGCCATA
ACTTCCACGT CCTACNTATT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
CTCTCTC
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wmc(6a9)
Plate reference : 6a9
WMC locus number : WMC Length of sequence : 697
Last updated : Lun 30 oct 2000 at 16:59
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR113 No overlap between forward and reverse sequences. Trimmed to insert at 3'. (CT)8 220 to 235, (CT)8 351 to 366, (CT)9 456 to 473, (CT)8 518 to 533, (CT)9 623 to 640. Too difficult to make primers. Relative 6c10. Bases 337-473 (ie. 5' and 3' side of microsatellites) match part of 13F3. Bases 352 to 426 show homology to TW4f08.1 bases 3 to 77 (complement) (75 in longest run, maxScore = 46). Bases 351 to 450 show homology to TW1a10.1 bases 113 to 212 (complement) (100 in longest run, maxScore = 58). Bases 38 to 54 show homology to TW1a11.4 bases 99 to 115 (complement) (17 in longest run, maxScore = 51). Bases 351 to 421 show homology to TW5e01 bases 27 to 97 (complement) (71 in longest run, maxScore = 58). Bases 346 to 391 show homology to TW7a02.1 bases 23 to 68 (46 in longest run, maxScore = 25).
PCR Comments :
Length of sequence : 697 Consensus sequence is :
..
CGAGGCGCGT GGATAATCCT CGCCTGCACT GGCCTCCTTA GCACCAAAGA
GGAAACAAGG ACGCTGCGCG CGCTGGCCCC CGCCTGGTGC CGACCGTCAT
GGCTCACGTC ACGAGAGCCT CGTGAGGTTT GCCCTGCCTT GATATCTACG
CTCCTCGTGA GCCCGCCTGG CTAGGCCACT CCTAAGGAGG TCTTGCATCG
TCCGCCTCTT TCTCTACATC TCTCTCTCTC TCTCTCGCCG ACAATCTTCA
ATTCCGCCGC ACGCATCCAA CACAAAATTC TTGTTGGTCC CTCTCCCTTT
CTCCCCATCT CTCTATCTCT CTCTCTCTCT TTCTCTCTCT CTCTATCTCC
CTCTCTCTCT CTCTCTCGCC GACAATCTTC AATTCTGTCG CACGCATCCA
ACACAAAATT CTTGTTGGTC CCTCTCCCTT TCTCTCCATC TCTCTCTCTC
TCCCCCTCTC TCTCTCTCTC TCTC
(break)
ATCTCTCTCT CTCTCGTTCT CTCTCTCTCG ATCTCCCTCT CTCTCTCTCT
CTCGCCGACA ATCTTCAATT CCGTCGCACG CATCCAACAC AAAATTCTTG
GTGGTCCCTC TCCCCTTCTC TCCATCTCTC TCTCTCTCCC CCTCTCTCTC
TCTCTCTCTC ACACCGACAA TCTTCAATTC TGTCGCACGC ATCCAACACA
AAATTCTTGT TGCTCCCTCT CCC
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wmc(6b9)
Plate reference : 6b9
WMC locus number : WMC Length of sequence : 198
Last updated : 15 Nov 1996 at 10:08
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR114. Trimmed to Rsa1 fragment. (GT)27 9 to 62. No room for primers.
PCR Comments :
Length of sequence : 198 Consensus sequence is :
..
GAGGATAGGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGTGTGT GTGGTGCGCC TTTGATTTGG GAGAGGTGGC GGCGGCGCGG
CCGCTAGCGT TCTGCGAGCT CTGTCCTCTT CCCGACATTG TCCTTTGTGG
TGGTGTTGTC GGGCTCGGGG AGGTANATTT CTGTCGTGCC TCTGGTAC
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wmc(6c9)
Plate reference : 6c9
WMC locus number : WMC Length of sequence : 283
Last updated : 15 Nov 1996 at 10:09
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR115. Trimmed to Rsa1 fragment. (CA)11 257 to 278. No room for primers.
PCR Comments :
Length of sequence : 283 Consensus sequence is :
..
GTACTCCATC ATCATCGACT CTGTGTCTGG CCTCAACCTG ACGCCGTCCA
AGGACCTTGC ATTGAACCCG CAGTTTAACC TCACGCTCCG CCTTGCCTCG
GCCAGCCTGG GTCGCCGCAC GTGCATAGAC GCTGGCACAT ATGTGCAAAT
GTAGTATCGT TGTGTTCCGC TTGTTGGCAC CGCCTCTCCT CGCAGCGCCG
CTTCTTCTTC CTCGCACACA ACTCTCTTGT GATTTATCGC TATCTTCTCT
CAAGAACACA CACACACACA CACACACACG TAC
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wmc(6d9)
Plate reference : 6d9
WMC locus number : WMC Length of sequence : 777
Last updated : 14 Nov 1996 at 15:54
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR116 No overlap between forward and reverse sequences. No substantial microsatellite. Long mononucleotide runs. Bases 162 to 174 show homology to 12g6 bases 277 to 289 (13 in longest run, maxScore = 19).
PCR Comments :
Length of sequence : 777 Consensus sequence is :
..
ATGCCTGCAG GTCGACTCTA GAGGATCCCC TTTCTTGCCG TTTCTTTTGT
TTCTCTTTCT TTCCCCCCTC TCTCCGCAAT AAACGCCTTC CCGGAACTGT
GTTTTCCCCC CCTACAACAG TGTTGTCCGT TGGTTGGGTG GTTGGGGTGC
GGGGGTGGGC GGGGGAAGCA AGAAAACGGT CGGCGAACAC AACATCGGGA
AAACGGATTC CCGAACGTGC GTCTTCCCAG ATTCGACACA CACCCCCCTT
CTCCTTAAAT AAACACAAAC CACACGCTCG TTGGTTGGTT AATGCCGGCG
CTTTATTTAC GTCTTGTTTT ATTGCGTTTC CTCCGCGGGT CCCTTCCCAA
CACGCCTTGC CCCCGCCTCA GGGGTAACGG ATAACCGGGG CCATGTCGCC
GGATTGCACA ACGGCGGCGC CGTCCGAA
(break)
TTGCTCAGAT ACCTCGAAAC CCCCGGCGAG GGTCACGGTG GGGTGAGGGC
TGCAGGCCTT TGCTCCCAAG TTACCCCGTG GGCCTCAGGA ACGGACGCCT
TGGAAGCAAA TTCCGGGAAC TCCCAGCTCC CAGGCTCAGA GGCGAGAGGG
GCATCAAGGC ACGTCTCAAC AGCACAGCCC GGGTTTTCTT CCCGGGTGTG
GGGACACCAG GCCGTGGGGG CCAGGCCGGG GGAGGCGGGG GCAGGCGCAG
CCCCTGTCCG CCGTGTGACT TGGGCGAGTC ACTTCTCCTC CCTGAGGCTC
CCGCCTCCAC CTGGTCCCTC TCCCGACTCA CGGGCAGCAT CCGCAGGGC
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wmc(6e9)
Plate reference : 6e9
WMC locus number : WMC Length of sequence : 334
Last updated : 14 Nov 1996 at 15:47
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR117. Trimed to insert. No substantial microsatellite.
PCR Comments :
Length of sequence : 334 Consensus sequence is :
..
CGAGAGGGCC TCAACGCCCG CCGCCACTCC CGTATTTCCG CCGCCGCCGG
CGCTGGCCTG AGACGAGACC TCGGCTCTCT GAAGAAGTGG CTTCGCACGC
CTGTATCTAA CTGAAAAAAG CCTCACACCA TATATGTGAG TCATAAGCCT
GAGACAACGT TTCTTTTCTA GCTATGCTGG GAATTCTCTT CTTATTACGA
CTGTGCACAA TTTCTCCACT TCCCCCCTCT AGTCTTGTCG CCGCCGGAGG
GCGCCCACTG GCAAACCCGG TCCAACCCCA AGGAAGGCGG CAGCGGGGCG
CTTTCTCCTG CTGGTGTGGT GCGTCGTGTA AGGC
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wmc(6f9)
Plate reference : 6f9
WMC locus number : WMC Length of sequence : 340
Last updated : Lun 8 FŽv 1999 at 10:07
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR118(GA)9 137 to 154, complex microsatellite. No room for primers. First 170 bases have homology with 1G1 family. Bases 186 to 224 show homology to 21a12 bases 125 to 163 (complement) (39 in longest run, maxScore = 41). Bases 156 to 190 show homology to 25f1 bases 30 to 64 (35 in longest run, maxScore = 42). Duplicate with 21a12, 6f9 has priority. Duplicate with 25f1, 6f9 has priority. Bases 184 to 232 show homology to 26h6 bases 65 to 113 (49 in longest run, maxScore = 41).
PCR Comments :
Length of sequence : 340 Consensus sequence is :
..
GTGGACTAGT TATGCAAGTA AGTAAAGGTG ATTGTTTATC ATACAGGCAA
GGTTGGATGA AGGGTGGTAG GAACAAATGC TCTGCCTAGA GCATGTGTGT
GTGAGATGGA GTCTNAGTGT GTGTGTGGGT GTGTGTGAGA GAGAGAGAGA
GAGAGGAGAG AGAGATGGAG TCTTAGTTTG TGTGTGTGTG AGAGAGAGGG
AGAGAGATGG AGTCTTAGTG TGTGTGGGGG GGGGGGCGTG CGTGCTTGCG
TGTGTGTGTT TGTGTGTGTG TGTGTGANAG ATGGATTCCN TAGNGNGTGT
GTGTTGGGGA GGGTGCGTGT GTGTGTGTCG CGGGGTCCTC
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wmc85(6g9)
Plate reference : 6g9
WMC locus number : WMC85 Length of sequence : 344
Last updated : Thu, Jun 11, 1998 at 11:29 am
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR119. Trimmed to insert at 3' end(CA)8 153 to 168, (CA)18 184 to 219. Products a little weak at 61C, try lower anneal?
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
ggAgTAAgAgAAAcATgccgAA at 27 length 22 bases, Tm 62
Reverse primer details :
gTgcATgcATgAgAATAggAAc at 233 length 22 bases, Tm 61
Expected size of amplified fragment (Chinese Spring=) 228 bases.
Length of sequence : 344 Consensus sequence is :
..
CGGCCCGTGA ATTCCTTGAG GCGCGTGGAG TAAGAGAAAC ATGCCGAACA
ACACGCTTCA AATCCCCACA TCCAACATGC ACGAACGGAA AAAATATAGA
ACCGCTTACC CTAATCAGCC GGAGCACTAA TCTTAGTAGN AAATAACTCG
NACACACACA CACACACACN ACACACACAC ATACACACAC ACACACACAC
ACACACACAC ACACACACAC GTAATCACAT CAGTTCCTAT TCTCATGCAT
GCACATAGTG AAATCGTCTC CGGAACCTCA GCCCACCACT GCATGCTCAC
ACGGGCGACA AAAGAGGAAA CCACCAATCA CATGCAGAGC GTAC
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wmc(6h9)
Plate reference : 6h9
WMC locus number : WMC Length of sequence : 355
Last updated : 14 Nov 1996 at 15:47
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR120. Trimmed to insert at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 355 Consensus sequence is :
..
GGGGGGGTGG ACTAACCTTA CCTCCCCTCA TCCTAGAGGG AACGATCTTG
GTTCTATCAT CCTTAAGATT CTTCATAGTG ATTAAAAAAT ATAAATCCCA
AGTGACTCAG CAAATAGAGC TATGCTTCCC GGCGACGGCG CTAGAAAAAG
GTCTTGATAA CCCACAAGTA TAGGGGATCG CAATAGTTTT CGAGGGTAGA
GTATTCAATC CAAATTTACT GATCCGACAC AAGGGGAGCC AAAGAATACT
TGCAAGTATT AGCAGTTGAG TTATGAATTC AACCACACCT GGAGACTAAA
ATATCTGCAA TAGAGTGATC AGTAGCACAG TAATATGGTA GTTTGATAGA
AGTGG
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wmc(6a10)
Plate reference : 6a10
WMC locus number : WMC Length of sequence : 125
Last updated : 14 Nov 1996 at 15:47
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR121. Trimmed to insert. No substantial microsatellite.
PCR Comments :
Length of sequence : 125 Consensus sequence is :
..
GGTCGGGATG ATTCAGGACG GGGTGGAACA CGTTCTTGCG GCTGTTGCGA
CACATGAGCA AGCCGAGGAG GGGTGGCTTG CGGTGGTGGG CACGGAAACA
GCGAAGGAAC TGGGGGTCAG TGGTG
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wmc86(6b10)
Plate reference : 6b10
WMC locus number : WMC86 Length of sequence : 908
Last updated : Lun 30 oct 2000 at 16:59
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR122 No overlap between forward and reverse sequences. Trimmed to insert at 3' end. (GT)12 355 to 378, (GT)11 630 to 651, (GT)11 662 to 683, (CT)8 339 to 354. Polymorphic though maybe best to redesign primers to get smaller PCR. Bases 169-231 match part of 8g4, forward primer outside this region. Bases 187 to 231 show homology to 21g9 bases 178 to 222 (complement) (45 in longest run, maxScore = 127). Bases 608 to 622 show homology to TW3a11.2 bases 240 to 254 (complement) (15 in longest run, maxScore = 55). Bases 552 to 586 show homology to TW1d02 bases 93 to 127 (35 in longest run, maxScore = 74). Bases 568 to 592 show homology to TW1e04 bases 155 to 179 (complement) (25 in longest run, maxScore = 27). Bases 201 to 231 show homology to TW2h07.2 bases 116 to 146 (31 in longest run, maxScore = 73). Bases 251 to 264 show homology to TW7d02 bases 161 to 174 (complement) (14 in longest run, maxScore = 34). Bases 266 to 287 show homology to TW7a05 bases 20 to 41 (22 in longest run, maxScore = 27).
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
cAcTggggTgcgcATggAgATT at 80 length 22 bases, Tm 72
Reverse primer details :
gggAccggATcgAgAgAAcAAg at 388 length 22 bases, Tm 68
Expected size of amplified fragment (Chinese Spring=) 330 bases.
Length of sequence : 908 Consensus sequence is :
..
CCTCGAGGCG CGTGGACTAA CAAGACAATG CGCATGATAA TGTCGGATTT
CGGGTTCCGG CAGACCCTTG AGGTTCGAAC ACTGGGGTGC GCATGGAGAT
TCAACCCTCT ATTGGCTCGC TCCTCACCGA ATCGCTAGGA CCTAAACTAC
TAACTGAACA ACACAAGAGA CACAAGATTT ATACTGGTTC AGGCCACCAT
TGTGGTGTAA TACCCTACTC CAGTGTGTGG TATGGTGGAT TGCCTGTTGG
GCTGATGAGG AACAATACAA AGGGAGAACA GCCTCGCGAG GGTCTGTTCT
TGGCTGGCGT GATGAACTGC TAGGGGGAGT TCAGTCGCCT CTCTCTCTCT
CTCTGTGTGT GTGTGTGTGT GTGTGTGTCT TCCAATCCTT GTTCTCTCGA
TCCGGTCCCC CTCTACCCCG GGGGTGGCTA GTCCTATTTA TAGGCAAAGG
CCCTG
(break)
CGTGGGCGTT CTGGCGCCGC CGGGAGAGAG GGGGAGAGAA ATCCCCCTCC
TTCTTATTCT TCCTTGACCT CCCGCCTAGA TGGGAGGTGG GTTTACCCTC
TGGTCCATGG CCTCCATGGC GGCGGAGGGG CAGGAGCACC TCCAAGATTG
GATCTCTCTC TCTCTCTGTG TGTGTGTGTG TGTGTGTGTG CGTCTGTCTG
TGTGTGTGTG TGTGTGTGTG TTTCCTTCTT TGTCTGCGTT CCCTGTTACT
GGCCTTTCAC TGTTTCTTTA ATTCCCAAAG ATCCGTAACT CCGATTTGTC
TGAAATTTTA ACACAATTTT TATCCGGATA TCGCTTTCAA ACTTGTAGGC
TAGTTCTGAG TGTAAGGACG CTGAATTGAG ACAAGTCGCT AATGGTTTTG
ACTATAAGGT CCGTTCATTT GACAAATACG ACATCAAGGG GTATTGCTTT
CGT
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wmc(6c10)
Plate reference : 6c10
WMC locus number : WMC Length of sequence : 763
Last updated : 6 DŽc 1996 at 16:24
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR123. Overlap forward and reverse sequences, but many sequence differences. Trimmed to insert at 3' end. (CT)8 128 to 143, (CT)8 259 to 274, (CT)9 364 to 381, (CT)9 545 to 562, (CT)8 585 to 600, (CT)9 690 to 707. Internal repeats make it too complex to design primers. Relative 6A9. Bases 277 to 362 show homology to 17a8 bases 353 to 438 (complement) (86 in longest run, maxScore = 60).
PCR Comments :
Length of sequence : 763 Consensus sequence is :
..
ACCGTCATGG CTCACGTCAC GAGAGCCTCG TGAGGTTTGC CCTGCCTTGA
TATCTACGCT CCTCGTGAGC CCGCCTGGCT AGGCCACTCC TAAGGAGGTC
TTGCATCGTC CGCCTCTTTC TCTACATCTC TCTCTCTCTC TCTCGCCGAC
AATCTTCAAT TCCGCCGCAC GCATCCAACA CAAAATTCTT GTTGGTCCCT
CTCCCTTTCT CCCCATCTCT CTATCTCTCT CTCTCTCTTT CTCTCTCTCT
CTATCTCCCT CTCTCTCTCT CTCTCGCCGA CAATCTTCAA TTCTGTCGCA
CGCATCCAAC ACAAAATTCT TGTTGGTCCC TCTCCCTTTC TCTCCATCTC
TCTCTCTCTC CCCCTCTCTC TCTCTCTCTC TC
(break)
TGCGCGCGCT GGCCCCCGCC TGGTGCCGAC CGTCATGGCT CACGTCACGA
GAGCCTCGTG AGGTTTGCCC TGCCCTGATA TATACGCTCC TCGTGAGCCC
GCCTGGCTAG GCCACTCCTA AGGAGGTCTT GCATCGTCCG CCTCCTTCTC
AACATCTCTC TCTCTCTCTC TCTCCTTCTC TCTCTCTCTA TCTCCCTCTC
TCTCTCTCTC TCGCCGACAA TCTTCAATTC TGTCGCAGGG ATCCAACACA
AAATTCTTGT TGGTCCCTCT CCCCTTCTCT CCATCTCTCT CTCTCTCCCC
CTCTCTCTCT CTCTCTCTCA CACCGACAAT CTTCAATTCT GTCGCACGCA
TCCAACACAA AATTCTTGTT GCTCCCTCTC C
Go back to index
wmc(6d10)
Plate reference : 6d10
WMC locus number : WMC Length of sequence : 355
Last updated : Wed, Oct 15, 1997 at 3:33 pm
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR124. Trimmed to Rsa 1 at 5' and 3'. No substantial microsatellite. Duplicate of 5h7, 5h12, 7F8, 7H8(2). Bases 109 to 175 show homology to 17c12 bases 115 to 181 (67 in longest run, maxScore = 57).
PCR Comments :
Length of sequence : 355 Consensus sequence is :
..
GTACAGAATC CGGATGCACA CGCATCTCAC GTATATTACA TGTCTCCATC
TTTCTCACAG ACCTAACTTC TTCCTCTCTC TTTCTCTCTC TATCTCCCTC
TCTCTGTTTC ATTAGGTTTG TCTCCTACTC TCTCGTCCAC ATACATACAA
TCTTTCCCGC CCTATCTGCT CCATCTTCAC AAGCTCTCTC TGCACGTTTC
ATTCACACAT TGGGATATGT TCAAAATGTT GCTTTTATAA TGGCTGATGT
AGAGCTATTG TTGGTTTTGT TGCATCCTAC AAAGTAATAA CTATGAAATG
CATTTTGATT GTCATTTGAC TGGGATTATG CGAGTTTGAG CATGTTGTGA
AGTAC
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wmc(6e10)
Plate reference : 6e10
WMC locus number : WMC Length of sequence : 0
Last updated : 19 Nov 1996 at 12:33
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR125 No overlap between forward and reverse sequences. No insert
PCR Comments :
Length of sequence : 0 Consensus sequence is :
..
CCTCTAGATC GACCTGCAGG CATGCAAGCT T
Go back to index
wmc(6f10)
Plate reference : 6f10
WMC locus number : WMC Length of sequence : 158
Last updated : Wed, Aug 6, 1997 at 10:02 am
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR126. Trimmed to Rsa1 at 3' end, and trimmed off vector at 5'. No room for primers. (CA)8 109 to 124, (CA)11 127 to 148,
PCR Comments :
Length of sequence : 158 Consensus sequence is :
..
GTGTGGACTA GCCCGTACGC GCCTGGCCCG TCGATCCATA CACACACACA
CACGCATATA CACACATACA CACACACACA CTACACACAC CACACACATA
CACACAGACA CACACACACA CACATGCACA CACACACACA CACACACACT
ACACGTAC
Go back to index
wmc(6g10)
Plate reference : 6g10
WMC locus number : WMC Length of sequence : 237
Last updated : 6 DŽc 1996 at 16:24
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR127. Trimed to insert. (CAA)16 85 to 132. Also (CGA.CAA)5 and (CAA) complexe repeats Related to 7e2. No room for primers.
PCR Comments :
Length of sequence : 237 Consensus sequence is :
..
CGACAACGAC AACGACAACG ACAACGACAA CGACAACAAC AACGACAACG
ACAACAACAA CAACAGCAAC AACAACAACA ACAGCAACAA CAACAACAAC
AACAACAACA ACAACAACAA CAACAACAAC AACACTAGCT TCACATGCTT
CGTGCGTCGG GCGAGTGTTT TTACTGTAGC CATATGTTAA TGTGTTCGCT
GTACGTAACC AGCACCTCGA ATCCTCGATA CTAGTAC
Go back to index
wmc(6h10)
Plate reference : 6h10
WMC locus number : WMC Length of sequence : 128
Last updated : 19 Nov 1996 at 12:37
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR128. Trimmed to insert. No substantial microsatellite.
PCR Comments :
Length of sequence : 128 Consensus sequence is :
..
CGGCCGGGTG AAACTCCAGT GTGCCATGTT CCTTCTTCTA CCTCTAATCC
TGAGTGAGAG ATAGAGAGAG CGGCAACAAC AATTGGCATA CAGAGCCTCG
GTTCTGGTGA TCACCGGCGA CCATGGCG
Go back to index
wmc87(6a11)
Plate reference : 6a11
WMC locus number : WMC87 Length of sequence : 756
Last updated : Mar 22 DŽc 1998 at 9:42
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR129. Trimmed to insert. (GA)16 195 to 226, (GA)9 347 to 364, (GT)9 177 to 194, (GT)15 317 to 346, (GT)15 400 to 429, (GT)8 433 to 448. Duplicate of 2e11 11e5. Expected band is smeary - smaller polymorphic bands. Weak math to 13H4. Bases 4 to 78 show homology to 17h10 bases 298 to 372 (complement) (75 in longest run, maxScore = 104). Bases 232 to 274 show homology to 21g8 bases 32 to 74 (43 in longest run, maxScore = 38). Bases 350 to 383 show homology to 25e6 bases 35 to 68 (complement) (34 in longest run, maxScore = 28).
PCR Comments : 61C anneal, smear; 61C anneal, polymorphic on acrylamide;
Forward primer details :
TggATgAAgggTggTAggAAcA at 95 length 22 bases, Tm 65
Reverse primer details :
AgAgATTAcATccgccAccgAg at 472 length 22 bases, Tm 66
Expected size of amplified fragment (Chinese Spring=) 399 bases.
Length of sequence : 756 Consensus sequence is :
..
GTACAGATGA TAAGTTTGCT GACTACTAAA GTAAAGTGGA ATTTGTCCAT
GTTATGCAAG TAAATAAAGG TGATTGTTAT CATACGGGTA AGGTTGGATG
AAGGGTGGTA GGAACAAATG CTCCTCCTAG AGCATGTGTG TGCGAGATGG
AGTCTTAGTG TGTGTGTGGG GTCTTTGTGT GTGTGTGTGT GTGTGAGAGA
GAGAGAGAGA GAGAGAGAGA GAGAGAGGAG AGAGAGAGAT GGAGTCTTAG
TTTGTGTGTG TGTGTGAGAG AGAGAGAGAT GGAGTCTTAG TGTGTGTGGG
GGGGGGGTGT GCGTGCGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGAGA
GAGAGAGAGA GAGATGGAGT CTTAGTGTGT GTGGGGGGTG CGTGCGTGCG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTN TNGTGTGTGT GTGTGTGTGG
GTGTGTGTGT GTCGCGGGGT CCTCGGTGGC GGATGTAATC TCTACAGTGT
GCATGGCTTC ATCATTTGGG GCGGAAAACG AATCGACATC TCGATGTGAT
ACAGCCCTCT TCCATTTTCG TTGGGAAAGA ACGGCGAAGT CCGTCCGAAC
CCTCCAATGA AGAAATAAGA GGAGAGCAAA GCGCCAATGG CGCGCGAAGC
GCATGCGGAA GGGGCACGGA GAAATAAAGA AGTGTGGGGG AGAAGCAGCC
GAGCTCATTC CCTTCGCTTC CTGGGCCCAA AGCAGTGCTT TGTTTCCTGG
CCAAAT
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wmc(6b11)
Plate reference : 6b11
WMC locus number : WMC Length of sequence : 781
Last updated : Lun 8 FŽv 1999 at 10:07
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR130. Multiple inserts (2) Joined by linkers at 485-498. Trimmed to insert. (GA)8 675 to 690, (GT)8 108 to 123. Second insert member of 1G1, 2F8 2D11, 2H11, 2A12, 6G1, 6H3, 6H4, 6B11, 7e3, 7h5, 7b6, 8a11, 5h10, 5d12, 11d4, 9H3. No room for primers in first insert. Bases 325 to 334 show homology to 2g2 bases 96 to 105 (10 in longest run, maxScore = 20). Bases 618 to 641 show homology to 22b1 bases 1 to 24 (24 in longest run, maxScore = 42).
PCR Comments :
Length of sequence : 781 Consensus sequence is :
..
CATTTTTGTC CATTTAAGCC TAAATGACAC CTGAAAAGAC ATTTTTGCCC
TCATGTGCTA TGTTTGCGTA CGCATGTGTG TGTGTGTGTG CTGTTGCGCA
TGTGTTTGTG TGTGTGTGTG TGTCTGTGCG TGCACACATG TTTGCTACTC
CTGCGTGTGT GTGTGCGCGC GCATGTGCAT GTTTGCTGCT ATGTGTGTGT
TTGCTACTGC GTGTGTGTGA GCCTCTGTGT GTTGCATGCA TCCATGCCGC
TGGGTGTGCT ACTGTGCGTG TGTGCTGCCT GTGTGTGCTG CTGTGGGTGT
GGGCTGCCTG TGAGTGCTGC GTGCGTGTGT GTGCTGTTGT GCGTGCAAGC
GTGCGTGTGT GCTGCTGCGT GCGTGCGTGT CTGTGCGATG TTGTGTGTGT
GCGTGTGCAT GTGTGTTGCT GCGTGTGTAT GTGCTGATGC GTGTGTCCTA
CTGCCCTCAC ACTCATTTTA CGTGTTTGTG GTTAGTCCAC GCGTGGACTA
ACAGATGATA AGTTTGCTGA CTACTAAGTA AAGTGGAATT TGTCCATGTT
ATGAAAGTAA ATAAAGGTGA TTGTTTATCA TACGGGTAAG GTTGGATGAA
GGGTGGTAGG AACAAATGCT CCGCCTAGAG CATGTGTGTG TGAGATGGAG
TCTTAGTGTG TGTGTGGGGT GTGTGAGAGA GAGAGAGAGA GGAGAGAGAG
AGAGATGGAG TCTTAGTTTG TGTGTGTGTG TGAGAGAGGG AGAGAGATGG
AGTCTTAGTG TGTGTTTGTG GGGGGGGGGG C
Go back to index
wmc(6c11)
Plate reference : 6c11
WMC locus number : WMC Length of sequence : 0
Last updated : 19 Nov 1996 at 12:38
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR131 No insert.
PCR Comments :
Length of sequence : 0 Consensus sequence is :
..
GAATTCCTCG AGGCGCGCCT CGAGGGATCC TCTAGAGTCG ACCTGCAGGC
ATGCAAGCTT
Go back to index
wmc(6d11)
Plate reference : 6d11
WMC locus number : WMC Length of sequence : 455
Last updated : 14 Nov 1996 at 15:48
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR132. Trimed to insert at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 455 Consensus sequence is :
..
GGGGTGTCAC TCGGTGGGGA GCCCGGCAGC AGACCCGTCT CGGACACAAT
GAAGCTAGGT GAAGATCTAA CCACAGGAGG GATTCCTTGG GCCCGCATAG
GCGGTGGCGG CGGCGGCGGG AGCCTGGTGT TGGAGAACAA GCTCGAGGTG
TTGGCTGTCG CCGGTGGGAG CTTGAGGTGC TAGCCGGAGG GAGCTCGAGG
TGTTGGTCGG CAACGGCACC AGCTACCGGA GACATTGCCT GAGCTGGAGG
TGTTGGGGAT CGCGAAGGGA GCTCGAGGTG CAGTATGGCG GCGGGACCAC
CTGTCGGAGG CACGACCGGA GCTGGAGGTG CTGAGTGTCA GGGCAGGAGC
TTGAGGTCCA GGCGATCGCG GCGGGCCACG CGGAGGGGAT CGCACGGAGG
GTATCGGAGA TTTTTATGTT ACTTTTTGAA TTTTGGAGGG AATTAATGTA
AAATG
Go back to index
wmc(6e11)
Plate reference : 6e11
WMC locus number : WMC Length of sequence : 347
Last updated : 6 DŽc 1996 at 16:58
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR133. Trimmed to insert. (GT)23 1 to 46. No room for primers.
PCR Comments :
Length of sequence : 347 Consensus sequence is :
..
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTCCTC
TACAGCATTC ACTTATGGCT ATTTCTTCAA GTTGCATTTT TCTGCTAAGT
GAATGTGATC GGACCGTTCC CCCTCTATGC TATACTCAAC CCAATCTATT
CACAAATTCT TCATCTGCAT TCTATTTGAA ACTCGTTCAA AATCTTCACT
GTGTCTTTGA CAGCTGAAGA ATTTGCGAAC GGAACTTTAA AATTAATTCT
ATCCAAAATT TTCGGTTTTA CCGCTCAAAC CATTCCGGAT CCCACGAAAG
ACTTATTTAT TCACCCACGA TCCAACACGA TCTCCACTCC TCAGTAC
Go back to index
wmc(6f11)
Plate reference : 6f11
WMC locus number : WMC Length of sequence : 708
Last updated : Wed, Aug 20, 1997 at 1:14 pm
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR134. Multiple inserts (2), joined 382-395. Trimmed to Rsa 1 at both ends. (CA)11 459 to 480, (GA)9 183 to 200, (CT)18 490 to 525. No room for primers in either insert. First insert matches 8b8 1g1 family. Bases 395 -475 in second insert (ie. 5' of microsatellite) match part of 3D1 complement.
PCR Comments :
Length of sequence : 708 Consensus sequence is :
..
GTACAGATGA GAATTTGCTG ACTACCAAAG TAAAGTGGAA TTTGTCCATG
TTATGCAAGT AAATAAAGGT GGTGGTTTAT CATACGGGTA AGGTTGGATT
AAGGGTGGTA GGAACAAATG CTCCGCCTAG AGCATGTGTG TGTGAGATGG
AGTCTTAGTG TGTGTGTGGG GTGGGTGTGT GTGAGAGAGA GAGAGAGAGA
GGAGAGATAG AGATGGAGTC TTAGTTTGTG TGTGTGTGAG AGAGAGAGAT
GGAGTCTTAG TGTGTGTTTG GGGGGTGTGC ATGCGTGCGT GTGTGCGTGT
TTGTGTGTGT GTGTGCGAGA GAGAGATGGA GTCTTAGTGT GCATGTATGT
GGGGGGGTGC GTGCGTGCGT GTGTGTGTGT AGTCCACGCG TGGACTATGT
TTGCATAAGA CACACACACT TTTTCTCTAC TTTTATCGTG TGTTGTCCAT
GTCTCTTTCA CACACACACA CACACACACA CTTTTTTCAC TCTCTCTCTC
TCTCTCTCTC TCTCTCTCTC TCTCTTTAGG GACTCTGTCA CGTCCATACG
CATATGGGTG TTTTGAAAAG TCAAACCTCA GAAAAGTTTG ACCAGGTATA
TATGGAGAAA AACATTTACA TCTGGAACGA TCATTAGATT CATCACAACA
TGTACAGGTA GACCCACAGT ACGGAATGAC AACAGTGGAT CTGAACAATC
TTGGGTAC
Go back to index
wmc88(6g11)
Plate reference : 6g11
WMC locus number : WMC88 Length of sequence : 440
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR135. Trimmed to insert at 3'. (CA) complex microsatellite. Amplifies many smaller fragments, some are polymorphic - (a bit RAPD like) redesign primers?
PCR Comments : 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
TgcAAcTAggggAcTAcAAA at 14 length 20 bases, Tm 58
Reverse primer details :
AgTTgcATgTcAAgcATcAg at 418 length 20 bases, Tm 59
Expected size of amplified fragment (Chinese Spring=) 424 bases.
Length of sequence : 440 Consensus sequence is :
..
TCTGTTATTG ACATGCAACT AGGGGACTAC AAACAAAACA AACACACAAA
CACACACACA TACACACACA CCAGCCCCCT AGTTGAGTCG ATGAGCAACT
TGCAACTGGG GGTCCTCAAC AAAACACACA CACCCTAGTT GCGAGTGGAT
GCTTAACATG CAGNTAGGGA TCCCCCCTTG ATAGAAAGAC ACACACATGC
ACGCACTCCT AGTCGCAAGA CTGCTATTGA CATGCAACTA TGGACCTAGA
AGGAAAACAC ACACACATTA CACACACACA CACCCCTAGT TGNGAGTTGA
TGGTCAACTT GAAACTGGGG GCGCAAAAAA ACACGCAAAC ACCCCCCTAG
TTGTGAGTCG ATGAGCAACT TGCAACTGGG GGCCCTNGAC NAAACACACA
CACCCCTAGT TACAAGTCTG ATGCTTGACA TGCAACTGGG
Go back to index
wmc(6h11)
Plate reference : 6h11
WMC locus number : WMC Length of sequence : 382
Last updated : Mar 22 DŽc 1998 at 9:41
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR136. Trimmed to Rsa1 at 3'. No substantial microsatellite, many mononucleotide runs. Bases 297 to 311 show homology to 2a5 bases 360 to 374 (15 in longest run, maxScore = 27).
PCR Comments :
Length of sequence : 382 Consensus sequence is :
..
GCCGCCGCCG CCGCCGTCCC GATNTATGAG GTAGCCATCG GTTTTATTCT
AAAAACCGTT CGGTTTTCAT ACGAAAACCT AGATGGTTTT CTTTATTAGA
TCCGTTTTTT TGGTTTAGTT ATTTAGCGAA CACCAGTTCG TACGTTCTTT
TTGACGAATG GTTTTCACCG GGTAACCGTA GACAGTGAGC TTTCGTTCGT
TAGTCAGTTC GTCGGTTTTC CTTTTCCAGG GATTTTCGCG ATTTTTTTCG
ATCGCATTAC CGCCCTGATT TTTGTTTTAG TTTATCTTTT CGTTCATTTA
TCGGAATCAG GAGATTTAAG CACCTAGATC CTTTTCTAGA AGCCCTCTTT
CTGTTTAACC AACTTGAACA AGATTTTGGT AC
Go back to index
wmc89(6a12)
Plate reference : 6a12
WMC locus number : WMC89 Length of sequence : 194
Last updated : Tue, Aug 19, 1997 at 5:16 pm
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR137. Trimmed to insert. (CA)19 64 to 101, (CT)8 40 to 55. Several polymorphic bands. Contain sequence element that matches 6C4 (complement of last 68 bases match bases 104-172 of 6C4) ie' 3' side of microsatellite.
PCR Comments : tested 61C anneal, no product; 51C anneal, polymorphic product on agarose; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
ATgTccAcgTgcTAgggAggTA at 6 length 22 bases, Tm 65
Reverse primer details :
TTgccTcccAAgAcgAAATAAc at 160 length 22 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 176 bases.
Length of sequence : 194 Consensus sequence is :
..
GTACTATGTC CACGTGCTAG GGAGGTATCT TGCCTATCCC TCTCTCTCTC
TCTCTCACAC ATACACACAC ACACACACAC ACACACACAC ACACACACAC
ACCCGCACGC ACACGCACAC ACACGCACAC ATACACGCAC ACACACGCAC
AAAAATTGAG TTATTTCGTC TTGGGAGGCA AAACATTTCA GAAC
Go back to index
wmc90(6b12)
Plate reference : 6b12
WMC locus number : WMC90 Length of sequence : 355
Last updated : Lun 5 juil 1999 at 17:23
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR138. trimmed to Rsa1 fragment. Imperfect interrupted microsatellite 141-214. Bands produced are not expected size. Bases 16-80 match 6b1 438-506. Bases 231-354 match part of 13C5 (complement).
Bases 55 to 91 show homology to 19d1 bases 273 to 309 (37 in longest run, maxScore = 90). Bases 182 to 225 show homology to 2a2 bases 100 to 143 (complement) (44 in longest run, maxScore = 57). True duplicate with 2a2, 6b12 has priority. Bases 205 to 226 show homology to 26e9 bases 77 to 98 (22 in longest run, maxScore = 73).
PCR Comments : tested 61C anneal, no product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
TcTcgcgcTccTTgTATcTAT at 22 length 21 bases, Tm 61
Reverse primer details :
TgggcATcTTgcTAgTTgTTg at 226 length 21 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 225 bases.
Length of sequence : 355 Consensus sequence is :
..
GTACGTGGAC TAACATGTCT CTCTCGCGCT CCTTGTATCT ATGTAGAATT
TTCATCCCTT CTTGAGACAC GCCCTCTCGA TCATGCACAC ATACACTATC
GCCTCATTTT ATGGTGATAC CTTTCGCACA CACACTCTTT GTGTNTTTGT
CACACACGCA CTCCGGCCTC CTCCTCTCTC CCTCTCTCTC TCACACACAC
ACACCACACA CACATGGGCT TTTTGCAACA ACTAGCAAGA TGCCCATGCG
TTGCACAGAA CATCAAGATG CATTTGTTTG AGTAGTTTAT CTTGCGGGAG
AAAAAGATGA ATGAGGGAAG GCCTTATTTG CCAATGTGGA GAGGGGTGTG
GGTAC
Go back to index
wmc(6c12)
Plate reference : 6c12
WMC locus number : WMC Length of sequence : 309
Last updated : Tue, Aug 19, 1997 at 5:19 pm
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR139. Trimmed to insert at 3'. (CA)15 44 to 73, (CA)8 112 to 127. Too difficult to design primers. Member of 1g1 etc family.
PCR Comments :
Length of sequence : 309 Consensus sequence is :
..
TGGAGTAACC CACGTCATTT CCTCAAACAC CCTGCGCCCC CTCCACACAC
ACACACACAC ACACACACAC ACACCNAAAC CTCCTCAAGC GTGCGCGCGC
GGGCGTGCGT GCACACACAC ACACACACCC TCCCTCGCTC GAAACCCTAC
CAAAGTCCCC GCCGCCGTTG CCACCGCAAG GCCCCCATTG TCAACATNTG
CCGGTTTGCG CATGCAGCTT ACCCACCGAT NTCCATACCC AGGCCGCCCT
GAGTTTNTTA GATGATGCCT GCCAAACGCC CCCTTTCCCA CAGATCCCCA
TCCCCACCC
Go back to index
wmc91(6d12)
Plate reference : 6d12
WMC locus number : WMC91 Length of sequence : 328
Last updated : Lun 9 oct 2000 at 14:43
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR140. Trimmed to insert. (CT)23 105 to 150. Bases 154-328 (ie. 3' side of microsatellite) match part of 3g4. Bases 105-253 (ie. 3' side of microsatellite) match part of 3A8 (complement). Bases 4-150 (ie. 5' side of microsatellite) match part of 13C3 (complement). Bases 105 to 156 show homology to tw9 bases 90 to 141 (complement) (52 in longest run, maxScore = 59). Bases 105 to 150 show homology to TW3a03 bases 106 to 151 (complement) (46 in longest run, maxScore = 61). Bases 152 to 198 show homology to TW1g12 bases 37 to 83 (complement) (47 in longest run, maxScore = 50). Bases 105 to 152 show homology to TW2c09 bases 124 to 171 (complement) (48 in longest run, maxScore = 89). Bases 105 to 148 show homology to TW2g09.2 bases 50 to 93 (complement) (44 in longest run, maxScore = 33).
PCR Comments : tested 61C anneal, no product; tested 51C anneal, no product;
Forward primer details :
TcTcggccTcTccAgATcTAAA at 66 length 22 bases, Tm 64
Reverse primer details :
AggATccggcTggATcTgTgAc at 162 length 22 bases, Tm 69
Expected size of amplified fragment (Chinese Spring=) 118 bases.
Length of sequence : 328 Consensus sequence is :
..
GTACTACTCC ACTATATAGG CAGGAGCCTC CGCGCTTGCT TGCTAGTGTT
GCTCTCTTCG TATTGTCTCG GCCTCTCCAG ATCTAAACAC GACAGCGGTG
GCCACTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
GCTCACCGCT GGTCACAGAT CCAGCCGGAT CCTCTCCGCC GGGGAAGGTG
AGAAGGTGCA ACGTTCACGC GGTCGTCCTC AGCGACGGCT CTTACCCACT
GCTGGGCGCG TCCCGATCAG CCTACCTTGC CATTCTCTCC CGAGCACCGC
TGGCGAGGGA GGGCCTCCGA CCCCTTCT
Go back to index
wmc92(6e12)
Plate reference : 6e12
WMC locus number : WMC92 Length of sequence : 420
Last updated : Jeu 27 Aož 1998 at 12:05
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR141. Trimmed to Rsa1 at 3' . (CA)15 263 to 292, (CT)9 245 to 262. Related to 7a3 (3rd insert), 8d10, 5a10, 11a3, 9g4, 5g2. Smear on agarose. Bases 389 to 420 show homology to 10a9.1 bases 219 to 250 (32 in longest run, maxScore = 91), 6e12 has precedence.
PCR Comments : tested 61C anneal, no product; 51C anneal, smear;
Forward primer details :
TgTATTTAcgAgcATcgAccAA at 206 length 22 bases, Tm 62
Reverse primer details :
AATAATTcAAcgggTcccAcTT at 306 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 122 bases.
Length of sequence : 420 Consensus sequence is :
..
TTCATCTTCC ACCACCCTGT TCTCCTCCGA CCACGACTTT GTTGGTTTCA
ACATAGCCCT TCCCGTAGCG ATCCACTGCT TCCATCCTAA TTGTGCCGCC
TGCGTGAAAT TTTTGTATGC AAGTTCAGTG TGCTATGATG CTCTATATGA
TTGTGTCAAC TATATAAGTT TTTACTGAGC ATCACCAATG CATATGGCTG
AAAGATGTAT TTACGAGCAT CGACCAATGG GTCTCTCTCT CTATCTCTCT
CTCTCTCTCT CTCACACACA CACACACACA CACACACACA CATGCGCACA
CACACAAGTG GGACCCGTTG AATTATTTCT TTGCTCATGA CAACTTTTAA
TTAGGTTCCA CTGTAATCTA ACTTTTTTCT TAAGTTATTA ATTGAGCTCA
GTGACTTCAA AAAGTTGTAC
Go back to index
wmc(6f12)
Plate reference : 6f12
WMC locus number : WMC Length of sequence : 255
Last updated : 14 Nov 1996 at 15:49
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR142. Trimmed to insert. No substantial microsatellite.
PCR Comments :
Length of sequence : 255 Consensus sequence is :
..
GTACCCCACG TCACCGGACG CCCGGAGGCC CTGGGAGGCG GCGGTCTCGG
CCGGCAGGAC GGCGGCCAGG CGGCGGAGGT TGGCCCCGTA GGTGCTGTTG
GTCTCGTGTA CTCCACCGAA GCAGTAGATC GTTTCTGCGG CGGCGAGGAG
AGGCGAGGCG GCGAGGAGGA GGAGCAAGAG GAAGGGCGAC GAGTGGCTGA
TGCTTTAAGC CGGCTAGGTT CTCAGCAAAA ACCGGTGCCG CCTAACACTT
TCTTG
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wmc(6g12)
Plate reference : 6g12
WMC locus number : WMC Length of sequence : 180
Last updated : Fri, Dec 6, 1996 at 17:59
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
Comments : AGR143. Trimmed to insert. (CA)29 106 to 163. No room for primers.
PCR Comments :
Length of sequence : 180 Consensus sequence is :
..
GTACGCACTC CATTAGATTA ATTAAATGGT GTGGTTGGGG CCTAACCATC
CGAGAGAGAC CGGACAACGG GGTAACACAC ACACACAAAC ACACACACAC
ACACGCACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC
ACACACACAC ACATCTAGCT AATGGTCTTG
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wmc93(6h12)
Plate reference : 6h12
WMC locus number : WMC93 Length of sequence : 638
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Devaux, Florimond Desprez Date at Agrogene : 19.9.96 Public Domain : Yes
PIC Value : 0.36
Comments : AGR144. Multiple inserts (2) joined by linkers at 331-344. Trimmed at both ends to insert. (GT)8 31 to 46, (GT)12 49 to 72, (GT)24 456 to 503. Primers here are for second insert, cannot design for first. (2 polymorphic loci?) Bases 1 to 328 show homology to 12e6.1 bases 1 to 328 (328 in longest run, maxScore = 244). Bases 347 to 638 show homology to 12e6.2 bases 3 to 294 (292 in longest run, maxScore = 205).
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
AcAAcTTgcTgcAAAgTTgAcg at 428 length 22 bases, Tm 64
Reverse primer details :
ccAAcTgAgcTgAgcAAcgAAT at 555 length 22 bases, Tm 66
Expected size of amplified fragment (Chinese Spring=) 149 bases.
Length of sequence : 638 Consensus sequence is :
..
GTACTGCCGG GTTTGGACCA ACCTACAGTA GTGTGTGTGT GTGTGTATGT
GTGTGTGTGT GTGTGTGTGT GTTGATTTTA GGAAATTAAA CAAATATACA
AAGAAGGATC ACACCCATTT CTATTTATAA ATGACATATT GGAGAAATTG
GCTAAAATTC TTCTTTTTGT TACCTCGATG AGTTGCCATC TCCTTAGTTG
ACACATCATA TATGCAATTG CCCTCTACTC ACTTCCTTAG TATATAAATC
ATATATTTGA ATTATGTCAT GCCGTGATGT TTACATAGAT AGCATGTATC
TGAATTATGG CATGCCAACC CATTTTCTTA GTCCACGCGT GGACTAACAA
ACTGTTAGCT TACACCTGAT TGTAGTTAAA GAGTTGTTTG TGCAATGTGG
ATGCATGCAC TTGTGTGATT GTGGGCTACA ACTTGCTGCA AAGTTGACGG
CAATTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TGTTGCAGTA AAAATGAGGC TGCTGAGAAG CTTGTAGAAA ATTAGAGTTG
TAGCATTCGT TGCTCAGCTC AGTTGGAAAC TTGCAGTATC TGTTACAGTT
GAAAAGAAGA AAAGAGAAAC GGCATCCGTC GCCTGAAA
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wmc(7A1)
Plate reference : 7A1
WMC locus number : WMC Length of sequence : 385
Last updated : Mar 22 DŽc 1998 at 17:07
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends. (CA)18 325 to 360. No room for primers. Bases 190 to 240 show homology to 2e2 bases 148 to 198 (complement) (51 in longest run, maxScore = 48). True duplicate with 2e2, 7a1 has priority.
PCR Comments :
Length of sequence : 385 Consensus sequence is :
..
AGCACAATCC GCACATGATC TCCTCCCAGC TTTCGACATG TTATTCTTGC
ATGCAAGGCT AAGCTATCTC CACCAGCTCC TTTTTTTGTC CTAGCTCTTC
CCTGCCCTGG CAAAACCAAA TGCTACCATC TCGTTTTTTT GCCATGCTAA
AACTTATGTG AGTTCATCGT CATGGATAGA TTAGCAACTG CCAAGCAATC
TGTCACAAAA ACATGTCAGG CAGCTAGGCA TGCGAGTGAC GTGTGTTGGT
AAGATTGGAT GTTTGTGTGT AAATGTAAAT CACGAAAAAT GATTCTTGGT
ATCTAGAGAA GAAACACACA CAAACACACA CACACACACA CACACACACA
CACACACACA CGAGAGAGAG AGAGAGTAAT TCATA
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wmc(7b1)
Plate reference : 7b1
WMC locus number : WMC Length of sequence : 189
Last updated : Mar 22 DŽc 1998 at 9:41
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends.(CA)12 24 to 47. No room for primers. Matches 6e5 first insert. Bases 51 to 72 show homology to 19c1 bases 59 to 80 (complement) (22 in longest run, maxScore = 19). Bases 53 to 97 show homology to 19h5 bases 58 to 102 (complement) (45 in longest run, maxScore = 47). Bases 51 to 102 show homology to 21f9 bases 64 to 115 (complement) (52 in longest run, maxScore = 70).
PCR Comments :
Length of sequence : 189 Consensus sequence is :
..
GTACACACAC ATACACACAC ATACACACAC ACACACACAC ACACACATAT
TTTTTTTACT TATTTTCTGT TTTCTGTTGT TTAGATTAAT GTTAGATGAA
TTGCGTAGAT AAGAATGTTA GGATGTTAAT GTTAGATGAA TTATATGGAA
AAGATGTTAA ATATTAATGT CAATTTTAGA TGAATTAGC
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wmc(7c1)
Plate reference : 7c1
WMC locus number : WMC Length of sequence : 117
Last updated : Tue, Dec 10, 1996 at 15:41
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at 5'. 3' join may be corrupted. (GT)27 1 to 54. No room for primers.
PCR Comments :
Length of sequence : 117 Consensus sequence is :
..
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTATTATG GTGAAATGTC TTAGTTTAGG CCTCACACGT TTATAACCTT
TTGTTTATAA ACGCGCC
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wmc94(7d1)
Plate reference : 7d1
WMC locus number : WMC94 Length of sequence : 649
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Multiple inserts (2) in this clone, joined 299-316 by linkers. Trimmed to insert at both ends. (GT)19 377 to 414 in second insert.
PCR Comments : 51C anneal, product;
Forward primer details :
TTcTAAAATgTTTgAAAcgcTc at 339 length 22 bases, Tm 58
Reverse primer details :
gcATTTcgATATgTTgAAgTAA at 424 length 22 bases, Tm 56
Expected size of amplified fragment (Chinese Spring=) 107 bases.
Length of sequence : 649 Consensus sequence is :
..
GGCGTTGCTG GCGCGCCGGA CGACGGCGGC GGCGGCGGCG AGGGAGAGGG
AGAGGGGATC GAACGATGCG GGAGTGGGGA TCGAATGTCG TGGAGAAGTT
TTTTTTTTAG GGGTCGGAGA AGATCTCCAG GTGGTCTGGT CCAACCCAGT
CCAGTGTGCT GCTTGGCCCG TTTACAACGA CTTGCCTCGT GCAAACCTGG
CCCGCGGTCA CATGCCAGCC CGTTAACATG TGTGCCCGGC CCGGGGTGGG
CCTGGCCTGG CACATATCTA ACTAGATGAC ATCCCGCAAA CTCTTAGTTA
GTCCACGCGT GGACTAGCCG CCGCCGCCAC GCCGCATGTT CTAAAATGTT
TGAAACGCTC TTTGCAGATT AACTTTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGTGTGT GTGTGAGGCT CAATTACTTC AACATATCGA AATGCACACG
GAGGCCCACT TCTGCTTCCC TGCGTGTTGA CGGCGAATTA GCTGTTGAAG
ATTGAACTAT NGTAATTAGG AGATCTGTAA ACTTGTAGTT GCTCTTGAAG
CACCTTCAGA ATATCCTCGG AGGACCTTCG CGTTGCAGCA CCCATGGCAG
CTCCGCGCTT CCACTGGTGA AACTGGAAAC TCACCGGTCA AGGAAGTAC
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wmc(7e1)
Plate reference : 7e1
WMC locus number : WMC Length of sequence : 301
Last updated : Jeu 27 Aož 1998 at 12:05
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends. Near duplicate of 2e7, 4d1, matches 11c10. Bases 1-255 match part of 5e6. No substantial microsatellite, CGG and CCT motifs. Bases 134 to 159 show homology to 10e9 bases 177 to 202 (26 in longest run, maxScore = 63), 7e1 has precedence.
PCR Comments :
Length of sequence : 301 Consensus sequence is :
..
CTCGTCGACG TCGATCTCCT CGTCCTCAGG GCCCACCTCG ACACCCTCCG
TGCCGCCGTC ACCGCCGCCT TCGACCTCGT CATTAGAGGA GAGCGCGATA
ACCTCGCCGC CCTCCGCGCC GCCGTCCTCG CCGCCTTCGA CCTCGTCATC
GGAGGAGAGT GCGATAACCT CGCCGCCCTC CGCGCCAGCA AAGATCGCCC
GCTCCGCCTC CATGAGCTTC GGGTGCTGCC GGCGGAGCTC TTGCATGTAG
GCCTCAGCCT CGAGATGCTC CCACGCCTCA CGATCCTCCC GCGCCATAGC
C
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wmc95(7f1)
Plate reference : 7f1
WMC locus number : WMC95 Length of sequence : 6
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends. (GT)18 179 to 214. A struggle to fit primers. (3 polymorphic loci?) Bases 83 to 173 show homology to 19d5 bases 1 to 91 (91 in longest run, maxScore = 75).
PCR Comments : 51C anneal, polymorphic product on agarose; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
gTTTTTgTgATcccgggTTT at 53 length 20 bases, Tm 63
Reverse primer details :
cATgcgTcAgTTcAAgTTTT at 229 length 20 bases, Tm 58
Expected size of amplified fragment (Chinese Spring=) 196 bases.
Length of sequence : 6 Consensus sequence is :
..
TCTAGATGCC CGTAAATAGG TTCTGATGGA ACTGAAATAT AGTAACACTT
AAGTTTTTGT GATCCCGGGT TTGGAAGTGA ATATTTGCAA AGGATATCCA
CTAGTGTAGC TTACAAAGGT GCGTTCAAAA TTACAGAAGA CTAAATCATG
TATTGAATTG AAGTGTGTGT GTGCGTGCGT GTGTGTGTGT GTGTGTGTGT
GTGTGTGTGT GTGTATGTGT GTGTGTTTAA AACTTGAACT GACGCATG
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wmc(7g1)
Plate reference : 7g1
WMC locus number : WMC Length of sequence : 251
Last updated : 5 DŽc 1996 at 13:54
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends. No substantial microsatellite, several CGG motifs.
PCR Comments :
Length of sequence : 251 Consensus sequence is :
..
CAGGGGATCG GTGTCGGAGA CGGGGCGGCG GCAGGGAGAT CGGCGGCGGC
TCATCAATGG GATCGGCGGC GTCTCCTGAA GAAGATTGAT GGCTCCCGTC
AAGGTAGCAC ATGGATCGGC AGCGGCTTGA TGTGCGAGGG CGGCGGCGAA
GGGAGATCGG AGACGGGGCG GCGGCAGGGA GAACAGAGAC GGGGCGGCGA
CGAACGACCC GTGGGTGCGA GTGCTTCGAG GGCAGGAGGA GTAGCTAGTA
C
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wmc(7h1)
Plate reference : 7h1
WMC locus number : WMC Length of sequence : 6
Last updated : Lun 8 FŽv 1999 at 10:07
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to Rsa1 site at 3'. Cannot find 5' end of insert (possibly bases 1-12=linker). (GT)11 152 to 173. Too difficult to design primers. Close relative of 5b9. Duplicate of 3A9(2) (complement). Bases 100 to 131 show homology to 19f5 bases 83 to 114 (complement) (32 in longest run, maxScore = 46). Bases 142 to 173 show homology to 26b3 bases 139 to 170 (32 in longest run, maxScore = 48).
PCR Comments :
Length of sequence : 6 Consensus sequence is :
..
GGCCGTGGAC TAGGGAGAAA GACTATCGAG AGTGTGCGCG GTAGGCACAA
AGGCACAACT AGAGAGTGTG TGTTTGTGTG TGTGTTTGAA AGAGGAGTAG
ATAGATTATT ATCAAGATCG ATGTGCCACC CTACTCCTTC GGTGCCGGGT
AGTGTGTGTG TGTGTGTGTG TGTTTGAGAG AGAAGCCAGT CGATAGACTA
GTATCAAGAT CGAGGTGTCA CCCAACTCCT TCGGTATTGG GAAGTGTGGG
TGTGGGGGGG GGGGAGTTCA CACTCACATA TCTGTAC
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wmc(7a2)
Plate reference : 7a2
WMC locus number : WMC Length of sequence : 669
Last updated : Mer 25 aož 1999 at 18:02
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends. Related to 2c8, 6a6, 6b6. (CA)8 41 to 56. No room for primers. Bases 68-108 (ie 3' side of microsatellite) match part of 7h12. Bases 171 to 206 show homology to 12c1.2 bases 200 to 235 (complement) (36 in longest run, maxScore = 152). Bases 171 to 207 show homology to 26b11 bases 190 to 226 (37 in longest run, maxScore = 157).
PCR Comments :
Length of sequence : 669 Consensus sequence is :
..
CACACACACA CACAGCACAA CACACACACA CACAGCACAA CACACACACA
CACACACTCC CCCGAGTACA CAATTCATCC CCATCCAAGG TTATACGGCG
ACCACTCTCG CTTGTGCTTC TTTGCACCCC AACATGCACA ACACCTCAAT
CTTCAAAGAG GGCAACGAGA AGATCGAAGA CGGCGACCAC ACTGCGCTAG
AGAATGCAGG GTCATTTGGA AGCAGGGTGA TGTGATGACG GCTGACTGAC
TCTTCCACCC ACCCCCTCTC TCTTGCACAA ATTACCAATC CATCTCTCCC
CCGCACAAAA TTGTCAATCC CTCAACCCAC GAGTTCCTTC CCCTCTCGTC
CATGTTTTTC CTGCTCTCTC ATCAAACATG TTGTCTCTTC TCCTTCCACG
TATACAGAAT CCAGATGCAC ACGCATCTCA TGTATATTAC ATGTATGCAT
ATTTCTCACA GGCCTAACTT CTTCCTCTCT CTTTCTCTCT CTACTCTCTC
TCTGTCTCGT TAGGTTGTCT CCTACTCTCT CGTCCACATA CATACAATCT
TTCCTGCCCT ATCTGCTCCA TCTCAAAAGC TCTCTCTGCA CGTTTCATTC
ACACATTGGG ATATGTCAAA ATATTGCTTC TATAATGGCT GATGTAGAGT
TATGGTTGTT CTTTTTGCA
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