Wheat microsatellite WMC 25/06/01
wmc(7b2)
Plate reference : 7b2
WMC locus number : WMC Length of sequence :
Last updated : 22 Nov 1996 at 8:44
Owner : Somers, Agriculture Canada Date at Agrogene : Public Domain : Yes
Comments : No sequence 22.11.96
PCR Comments :
No sequence available for this clone
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wmc(7c2)
Plate reference : 7c2
WMC locus number : WMC Length of sequence :
Last updated : 22 Nov 1996 at 8:44
Owner : Somers, Agriculture Canada Date at Agrogene : Public Domain : Yes
Comments : No sequence 22.11.96
PCR Comments :
No sequence available for this clone
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wmc96(7d2)
Plate reference : 7d2
WMC locus number : WMC96 Length of sequence : 389
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
PIC Value : 0.47
Comments : Trimmed to insert at both ends. (CA)29 177 to 234. (1 locus polymophic out of 3)
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
TAgcAgccATgcTTAgcATcAA at 28 length 22 bases, Tm 65
Reverse primer details :
gTTTcAgTcTTTcAcgAAcAcg at 286 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 280 bases.
Length of sequence : 389 Consensus sequence is :
..
GTACCAAATG TGTTTTCAAT ATGTAATTAG CAGCCATGCT TAGCATCAAG
CTTTGATAGA GGGGGCGCTT AGATGATTTT TGATTTTAGG TATTTATTTT
CTCTATCTCT GAGCATCTAC ACAGGCAACC CGCATTATAG ATGATATTAG
CCTGCTGCCA GTGTCGTTCC TCTAGGCACA CACACACACA CACACACACA
CACACACACA CACACACACA CACACACACA CACATTTTGC CTGGTGAAGG
GAATGCCTCA AATCATCAGA CTCCTGATTA TGTGTCGTGT TCGTGAAAGA
CTGAAACTGA CACTATCGGT TCTAGATGTA AATGATGTCT GCTTTAATGT
GGTTGTTGTG TTGTTGAAGC TCAAATGGAG TGTTTATGC
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wmc(7e2)
Plate reference : 7e2
WMC locus number : WMC Length of sequence : 305
Last updated : Tue, Dec 10, 1996 at 12:06
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Cannot find 5' or 3' end of insert. Related to 6g10. (TTG)44 23 to 154, check BamH1 sequence at 3' end , is this vetcor. No room for primers
PCR Comments :
Length of sequence : 305 Consensus sequence is :
..
GGCCGTGGAC TAGTTGTTGC TGTTGTTGTT GTTGTTGTTG TTGTTGTTGT
TGTTGTTGTT GTTGTTGTTG TTGTTGTTGT TGTTGTTGTT GTTGTTGTTG
TTGTTGTTGT TGTTGTTGTT GTTGTTGTTG TTGTTGTTGT TGTTGTTGTT
GTTGTAGTCG TTGCACCCCA AGCGCCCCGA AGGATCCTCA ATAGTCGACC
TGCAGGCATG CAAACTCGGC GTAATCACGG TCACAGCTGT TACCTGTGTA
AAATCGCAAT CCGCCCACAA TCCCACAAAA CAGACGAACC GGAAGCATAA
ACTGT
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wmc97(7f2)
Plate reference : 7f2
WMC locus number : WMC97 Length of sequence : 242
Last updated : Mer 23 DŽc 1998 at 11:28
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends (Rsa1 at 3'). (GT)26 176 to 227. Tight fit for primers. Complex band pattern. Bases 50 to 162 show homology to 2g6.1 bases 75 to 187 (complement) (113 in longest run, maxScore = 98). True duplicate with 2g6.1, 7f2 has priority.
PCR Comments : 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
gTccATATATgcAAggAgTc at 59 length 20 bases, Tm 54
Reverse primer details :
gTAcTcTATcgcAAAAcAcA at 223 length 20 bases, Tm 53
Expected size of amplified fragment (Chinese Spring=) 184 bases.
Length of sequence : 242 Consensus sequence is :
..
GGCAAGGCCA GCGTCTAAGC AAAAGGAACC ATTTGATTTT TGCGATGAAG
CAAAACGAGT CCATATATGC AAGGAGTCCA TAGCTCAACC TATTCCATGA
AAGCACATGC GGATTCCAGT TGAAGTCCAA TTAGTAGTTC TGTTTTTAAT
ACATGATGAT GATGATGATG TGTATGTGTG TGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTTTT GCGATAGAGT AC
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wmc(7g2)
Plate reference : 7g2
WMC locus number : WMC Length of sequence : 287
Last updated : Tue, Dec 10, 1996 at 12:07
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends (Rsa1 at 5'). (CA)9 267 to 284. No room for primers.
PCR Comments :
Length of sequence : 287 Consensus sequence is :
..
GTACACAACC CTAAAAGAAT TAATCCTCCT TGTTCATCAC ATGTGCCTCT
CTCTCGTTGG ATCAAAGTGA TGGAGGACGA CCTCGCGGGC CCAAAGATGG
AAGCACCGCA CGCGAGTGAG TTCCAATAGG GAAACCACCA CATGCATGGT
ATTGCGTGAT GTTTGAATAC CAATGAAAAA CTTTGATGTG GCACCTACCT
CGGGAACCGG AAAGTCCCCA CATGGAGCAA GGTTATGACA CACACACCCA
CACACACACA GACAGACACA CACACACACA CACACGC
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wmc(7h2)
Plate reference : 7h2
WMC locus number : WMC Length of sequence : 292
Last updated : 5 DŽc 1996 at 18:13
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends (Rsa1 at 5'). No substantial microsatellite.
PCR Comments :
Length of sequence : 292 Consensus sequence is :
..
GTACATCGAA TCGCAAGGAC GACGCGGCCC TCGGAGCCCT TCGCCACCGC
CGGTGTCCGA GAGGACCTGC CGCCGTCTTC CCCACCAAGA TCTCCACCCT
CTCCCCCGCC AGCGTCATCC ACTCACGTTC TTTCCTTAAA GCGGGGAGGC
CCCAGATCGA GTTGAGCAAG TCAGGGGCCG CCGCCGACGC GGATCCCCAC
GAGCGAGCCA GCCATCGCCG CTGCGGTTCC CCACGAACGA GCCAGCCATC
GCCGCCTCGG ATCCCCACGG ACGCCGCCGC GGATCACCAC CG
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wmc(7a3)
Plate reference : 7a3
WMC locus number : WMC Length of sequence : 891
Last updated : Tue, Dec 10, 1996 at 12:09
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Multiple inserts (3) plus a concatenated linker in this clone. inserts are 1-245, 264-548, 577- 891. Concatenated linker is 549-576. Trimmed to insert at 5' and 3' ends (Rsa1 at 5'). Reverse of last insert matches 6e12, part of complement of 5d5(3), forward matches 8d10, 5a10, 11a3, 9g4. Bases 675-833 (ie. 3' side of microsatellite) match part of 13A4 (complement). (GA)9 333 to 350, (GA)15 661 to 690, (GT)16 200 to 231, (GT)10 313 to 332, (GT)12 621 to 644. No room for primers in any insert.
PCR Comments :
Length of sequence : 891 Consensus sequence is :
..
CCTTCGCACG GTCCAAGGCC CTGCGTGCAC CGTCAATGCA GACGGACCGC
TTAACGACTT CAAGCTGCGA ATAGGCATTC ACCATCCGCT TGACAAAGCC
GAAGTAGCTG CTGGGTAGGG GCTCGCCAGG CCACATCCAG ACTATGAAGT
CCTTCATGGC CAGTTCGGAC TATGTGTGTA GTGTGTGTGG GGGGGTGTGG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TTTGTGTGTG AGTGTTAGTC
CACGCGTGGA CTATTCAACG GGTCCCACTT GTGCGTGTGC GCGTGCACGC
GCGTGTGTAT TTGTGTGTGT GTGTGTGTGT GTGAGAGAGA GAGAGAGAGA
TAGAGAGAGA CCCATCTGTC GATGCTCGTA AATACATCTT TCAGCCATAT
GCATTGCTGA TGCTCAGTAA AACCTTATAT AGTTGACACA ATCATATAGA
ACATCATAGC ACACTGAACT TGCATACAAA AATTTCACGC AGGCGGCACA
ATCATGATGG AAGCAGTGGA TCGCACAGTG TGTTGTCGAC AAACTGGTTA
GTCCACGCTA GTCCACGCGT GGACTACACG AGAAAATAAA TAATTCAACG
AGTCCCACTT GTGTGTGTGC GTGTGTGTGT GTGTGTGTGT GTGTGCATGT
GTGTGTGTGT GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA CCCATCGGTC
GATGCTCGTA AATACATCTT TCAGCCATAT GCATTGCTGA TGCTCAGTAA
AAACTTATAT AGTTGACACA ATCATATAGA ACATCATAGC ACACTGAACT
TGCATACAAA AATTTCATGC AGGCGACACA ATCAGGATGG AAGCAGTGGA
TCGCTACGGG AAGGGCTATG TTGAAACCAA CGAAGTCGTA C
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wmc98(7b3)
Plate reference : 7b3
WMC locus number : WMC98 Length of sequence : 243
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends. (GA)8 173 to 188, (GT)14 145 to 172. Last 50 bases or so match complement of 11h8.
PCR Comments : tested 61C anneal, no product; 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
ccTTTgcAATTTAATTgggTTc at 89 length 22 bases, Tm 61
Reverse primer details :
ATcATcgcAAAAccTgTgcTAT at 192 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 125 bases.
Length of sequence : 243 Consensus sequence is :
..
GTTAACAAGC TAGGTTAACT AGGTTGTCTA GGTTATAGCA AAAATTTAGT
ATAGAGCATT AGGTCAGAAG GGTTAGAGAA AATGAGTTCC TTTGCAATTT
AATTGGGTTC TGTCCAAGGC AAAGAAAGCG TTAGAGAAAA TAATGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGAGAGAGA GAGAGAGAGG AATAGCACAG
GTTTTGCGAT GATCATGACG CGAGAGCGAT GTTACTTGTT TGG
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wmc99(7c3)
Plate reference : 7c3
WMC locus number : WMC99 Length of sequence : 229
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at 5' end. 3' end not located.(GT)13 160 to 185. (2 loci? 1 polymorph)
PCR Comments : 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
ATTAcAATTgcTTcAgTgAgTg at 51 length 22 bases, Tm 56
Reverse primer details :
TcATgATcATTgTTATAAcggT at 187 length 22 bases, Tm 56
Expected size of amplified fragment (Chinese Spring=) 158 bases.
Length of sequence : 229 Consensus sequence is :
..
GTGGACTTGC TGAAAAGCTC TATTATTGAC TCTTTCCCAT GTTATGATAA
ATTACAATTG CTTCAGTGAG TGAGATTATA GTTTGTTAGT TCTCAATGAA
GTTTCTAAAT CATACTTGAC ATTGTGAATG GATTGTTACT TGAGCATAAG
AAATCATATG TGTGTGTGTG TGTGTGTGTG TGTGTTACCG TTATAACAAT
GATCATGACG CTCTCTCCAT GTCCGTATC
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wmc100(7d3)
Plate reference : 7d3
WMC locus number : WMC100 Length of sequence : 514
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends (Rsa1 at 5' end). (GT)32 218 to 281.
PCR Comments : tested 61C anneal, no product; 51C anneal, polymorphic product on agarose; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
gAgccAAATTTgcTgTTTccT at 195 length 21 bases, Tm 62
Reverse primer details :
gcATccTcTTAAcTgcTgTgA at 399 length 21 bases, Tm 60
Expected size of amplified fragment (Chinese Spring=) 225 bases.
Length of sequence : 514 Consensus sequence is :
..
GTACCAGGAC CACCGGATGG GTCCCGGGGG TCCACCGGGT GGGGCCACCC
ATCCTAGAGG GCCCCATGGG CTAAGTGGGG AGGGGAACCA GCCCATAGTG
GGTGGTGCGC CCCCCTTGGC CCACCCCCTG TGCCTAGGGT TGGAAACCCT
AGGGTGGGGG GGCGCCCCAC TAGCCTTGGG GGGTGGTAAT GGAGGAGCCA
AATTTGCTGT TTCCTTTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TAAAACTATA CTCCCTCCGT
CTAGGTGAAT AAGTCGTAGT AGAAGGTGCA TCACGACCTA GGTGCAAGCA
GATTGGTGGA AAAGAAGAAT ATTTCTCTCT TCTAAACACA ACATTTAATC
ACAGCAGTTA AGAGGATGCC TTATTAGCTA CCCATGCAGG CCATCGTAAT
TCATAGCAAG CAAAGCACTT TTATTTCTTG CCTAATAACC GCATGGACGT
GCTGCATGCA TTGG
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wmc(7e3)
Plate reference : 7e3
WMC locus number : WMC Length of sequence : 253
Last updated : Tue, Dec 10, 1996 at 17:40
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimed to insert at both ends (Rsa1 at 3' end). Member of 1G1, 2F8 2D11, 2H11, 2A12, 6G1, 6H3, 6H4, 6B11, 7e3, 7h5, 7b6, 8a11, 5h10, 5d12, 11d4, 9H3. .(CA)9 60 to 77, (CA)8 79 to 94, (CT)9 42 to 59. No room for primers
PCR Comments :
Length of sequence : 253 Consensus sequence is :
..
CTCTCTCTCA CACACACAAA CTAAGACTCC ATCTCTCTCT CCTCTCTCTC
TCTCTCTCTC ACACACACAC ACACACACCA CACACACACA CACACTAAGA
CTCCATCTCA CACACACATG CTCTAGGCGG AGCATTTGTT CCTACCACCC
TTCATCCAAC CTTACCCGTA TGATAAACAA TCACCTTTAT TTACTTGCAT
AACATGGACA GGATCCACTT TACTTTAGTA GTCAGCAAAC TTATCATCTG
TAC
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wmc101(7f3)
Plate reference : 7f3
WMC locus number : WMC101 Length of sequence : 157
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends (Rsa1 at 5' end). (CA)14 38 to 65. Settings for these primers lax. Main product wrong size (300 bases) - faint bands at right size may be polymorphic.
PCR Comments : 51C anneal, product;
Forward primer details :
TAgTcgccATgcAATgTTcT at 8 length 20 bases, Tm 61
Reverse primer details :
gAAgTgggAAggTcgATAAA at 127 length 20 bases, Tm 58
Expected size of amplified fragment (Chinese Spring=) 139 bases.
Length of sequence : 157 Consensus sequence is :
..
GTACGCTTAG TCGCCATGCA ATGTTCTTAT TTTATTACAC ACACACACAC
ACACACACAC ACACATATAT ATATATATAT TAGAAACAAC ATAAGGTTCC
GTTAAACCTG TCGTTCGTCC AACCATTTTA TCGACCTTCC CACTTCCTTT
ATTTTTC
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wmc(7g3)
Plate reference : 7g3
WMC locus number : WMC Length of sequence : 198
Last updated : 5 DŽc 1996 at 13:55
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at 3' end. 5' end not located - possibly 1-9. No substantial microsatellite.
PCR Comments :
Length of sequence : 198 Consensus sequence is :
..
GGCGCGTGGC CTCGCCTGAG AGCAGAGTCT GGCGGGTGCC ATGGCTGGAC
TGTGCCCCAA GGAGGAGAAG GAGGATAGCC CCGGGCCAGA CAGCTCTGGC
AACGAGCAGA TCCGGCTCGA TCCGCACTGC GTCTTCGACC GCTATTTCTG
CGAGAAGGAC GGCAAGGGCA GCCGTGGATG GTCTTCTTCA TAGCTAGT
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wmc(7h3)
Plate reference : 7h3
WMC locus number : WMC Length of sequence : 244
Last updated : Tue, Aug 19, 1997 at 5:28 pm
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends. (CT)8 127 to 142. No room for primers. Last 100 bases of sequence match 1g1 etc
PCR Comments :
Length of sequence : 244 Consensus sequence is :
..
CTCTCTCACA CACACACACA AACACACACA CACGCACCCC CCCCACACAC
ACACAGACAC ACACTTAGAC TCCATCTCTC TCTCTCTCTC ACACACACAC
AAACTAAGAC TCCGTCTCTC TCTCTCCTCT CTCTCTCTCT CTCACTCTCT
CTATCTCTCT CTCTCACACA CACACCACAC ACACTAAGAC TCCATCTCAC
ACACGCATGC TCTAGGCGGA GCATTTGTTC CCACCACCCT TCAT
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wmc(7a4)
Plate reference : 7a4
WMC locus number : WMC Length of sequence : 83
Last updated : Tue, Dec 10, 1996 at 12:14
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends. Too small to make primers - this region is identical to central part of 1d5, 8e11, 7f12, 11d10. (GA)12 59 to 82, (GT)24 11 to 58. No room for primers.
PCR Comments :
Length of sequence : 83 Consensus sequence is :
..
GCGCGCGCAC GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGTGTGA GAGAGAGAGA GAGAGAGAGA GAG
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wmc(7b4)
Plate reference : 7b4
WMC locus number : WMC Length of sequence : 400
Last updated : Lun 9 oct 2000 at 14:43
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at 5' end, 3' end not located, possible 388-400. NB contains Rsa1 site 11-14. (CT)8 73 to 88, (CT)31 214 to 275, (CT)21 347 to 388. Too complex to design primers internal duplication of around 90-140, matching 290-340. Core sequence is similar to 6A3. Bases 243-385 match part of 13F3 (ie. between two microsatellites). Bases 52-243 match part of 13E5. Bases 276 to 322 show homology to 22b10 bases 9 to 55 (complement) (47 in longest run, maxScore = 62). Bases 183 to 219 show homology to 22d5 bases 48 to 84 (37 in longest run, maxScore = 60). Bases 213 to 274 show homology to TW1b08.2 bases 25 to 86 (complement) (62 in longest run, maxScore = 24). 7b4 is aduplicate of TW1b08.1, TW1b08.1 has priority. Bases 91 to 148 show homology to TW2g02 bases 240 to 297 (complement) (58 in longest run, maxScore = 100). Bases 133 to 162 show homology to TW5d10 bases 56 to 85 (complement) (30 in longest run, maxScore = 43). Bases 61 to 148 show homology to TW5e11.2 bases 218 to 305 (complement) (88 in longest run, maxScore = 69).
PCR Comments :
Length of sequence : 400 Consensus sequence is :
..
CAATTCCGTC GTACGCATCC AACACAAAAT TCTTGTTGGT CCCTTTCCCT
TTCTCTCCAT CTCTCTCTCT CCCTCTCTCT CTCTCTCTCA CCGACAATCT
TCAATTCTGT CGCACGCATC CAACACAAAA TTCTTGTTGG TCCCTCTCGC
TTTCTCTCCA TCTCTCTCTC TCTTTCTCTC CATCTCTCTC TCTCCCTCTC
TCTTTCTCTC CATCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
TCTCTCTCTC TCTCTCTCTC TCTCTCCGAC AATCTTCAAT TCTGTCGCAC
GCATCCAACA CAAAATTCTT GTGGGTCCCT CTCCCTTTCT ATCCATCTCT
CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTAG TACACGCGCC
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wmc(7c4)
Plate reference : 7c4
WMC locus number : WMC Length of sequence :
Last updated : 22 Nov 1996 at 8:44
Owner : Somers, Agriculture Canada Date at Agrogene : Public Domain : Yes
Comments : No sequence 22.11.96.
PCR Comments :
No sequence available for this clone
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wmc(7d4)
Plate reference : 7d4
WMC locus number : WMC Length of sequence : 327
Last updated : Thu, Dec 5, 1996 at 22:13
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends (Rsa1 at 5' end). No substantial microsatellite.
PCR Comments :
Length of sequence : 327 Consensus sequence is :
..
GTACGCCTTT AGGGCGCCAT AATCGCGGGA CATGGGGGGA GTGGGCGCAG
TTAATCCCAC GTTCCCCCAC GCCTCGCCTC CTCGGCTCCG CCGCCCGAGC
CTATAAGTAG GGGGAGGAGG GGGAGCGGCA GGGGCTCGCA CGCACATCGT
CGCTCCTCTC CTTCCTTTGC TCTCTTCCTC ACTCTTCCGC CGCCGCAGCG
CACTTGCCAC CGCGCCGTTC TACCGCGAGT TGCTTTGGTG CGCCGTGGTT
CCTTCATCGC GCGGCCGTGT TCTCCGCCGC CGCGCCTCTC TTTTTCCGCT
CGTCCCCATG GCGCTGTCGA GCTCGTG
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wmc102(7e4)
Plate reference : 7e4
WMC locus number : WMC102 Length of sequence : 404
Last updated : Mar 20 Juil 1999 at 14:24
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
PIC Value : 0.33
Comments : Trimmed to insert at both ends (Rsa1 at 5' end). (GT)12 114 to 137. (1 polymophic locus out of 2). Bases 114-323 (ie. 3' side of microsatellite) match complement of 11C3. Bases 114 to 243 show homology to 22c2 bases 139 to 268 (130 in longest run, maxScore = 95). Duplicate with 22c2, 7e4 has priority. Bases 114 to 197 show homology to 10e3 bases 81 to 164 (complement) (84 in longest run, maxScore = 119). Duplicate with 10e3, 7e4 has priority.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
ccTAcTTgTTgTTTTgggcAgA at 72 length 22 bases, Tm 63
Reverse primer details :
TcAAAcATcAAgcAcAcAccTc at 227 length 22 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 177 bases.
Length of sequence : 404 Consensus sequence is :
..
GTACTTGAAG TGCATGTCAT GTTTGTGTGA ATCTTGTTCT TGTAGCATGT
TGTTATGATG CTTGCAATAT GCCTACTTGT TGTTTTGGGC AGATTGTTAT
TCAAACTTGC TTCGTGTGTG TGTGTGTGTG TGTGTGTTGA ACCGTTGCTC
CGTTTTGATC ATGTCCTATC TAAAACTTGC TTGGTTTTGC ATGTAGTTTC
ATCATGACAT GTTGCATCCT TGTTTTGAGG TGTGTGCTTG ATGTTTGAAC
GCATTTTGCA TCAATGCCAT GTTTAACTTG TGTTGCTCAC ATCTTCTAGA
CCGTAGCCCC AAATTAAATG AACTTTATAT GTAACTCTCT TAGAAAATCC
GTGTAGATCA TCATGGTGCA TCTAACTTGT TGTTTTAACA ACTTCAACAT
AATG
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wmc(7f4)
Plate reference : 7f4
WMC locus number : WMC Length of sequence :
Last updated :
Owner : Somers, Agriculture Canada Date at Agrogene : Public Domain : Yes
Comments : No sequence 22.11.96.
PCR Comments :
No sequence available for this clone
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wmc(7g4)
Plate reference : 7g4
WMC locus number : WMC Length of sequence : 564
Last updated : Lun 8 FŽv 1999 at 10:07
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at 5' end. 3' end not located. No substantial microsatellite. Matches first insert in of 5C1. Bases 77-105 match prt of 14G2.
Bases 91 to 106 show homology to 24e2 bases 16 to 31 (16 in longest run, maxScore = 19). Bases 201 to 214 show homology to 22h1 bases 219 to 232 (14 in longest run, maxScore = 41).
PCR Comments :
Length of sequence : 564 Consensus sequence is :
..
GTACTAAGTT TCCAGTTAAT ACAATTCTAG GATGAATAAT AAACATTTAT
CATGAAATAA GGAAATAAAT AATAACTTTA TTATTGCCTC TAGGGCATAT
TTCCTTCACG CACCATATCT AATAAAGTGC GGTTACGACG TTCGGATACA
CCATTACGCT GTGGTGTTCC ATGTGGCGTG AGTTGCGAAA CTATTCCACA
TTGTTTCAAA TGAAGACCAA ACTTATAACT CAAATATTCA CATCCACGAT
CAGATTATAG AAACTTTATT TTCTTGTTAC GATGATTTTC CACTTCACTC
TGAAATTCTT TGAACTTTTC AAATGTTTCA TATTTATGTT TCATCAAGTA
GATATACCCA TATATGCTCA AATCATCTGT GAAGGTCAGA AAATAACGAT
ACCCGCTGCG AGCCTCAACA CTCATTGGAC CGCATACATC AGTATGTATT
ATTTCCAACA AGTCAGTTGC TCTCTCCATT GTTCCGGAGA ACGAAGTCTT
AGTCATCTTG CCCATGAGGC ATGGTTCACA AGCATCAAGT GATTCATAAT
CAAGTGATTC CAAA
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wmc103(7h4)
Plate reference : 7h4
WMC locus number : WMC103 Length of sequence : 406
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at 5' end, 3' end not located. (GCC)7 322 to 342. 1 polymophic locus from 2 or 3)
PCR Comments : 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
AgcgTTgTcTAggTTTAggTTg at 94 length 22 bases, Tm 59
Reverse primer details :
TAgTAgcTAgccAgATggATTg at 365 length 22 bases, Tm 58
Expected size of amplified fragment (Chinese Spring=) 293 bases.
Length of sequence : 406 Consensus sequence is :
..
GTACAAGTTG TAGCGTGAGG AGTCCTCATC GTTTTCCTAG TCCAAGTTGG
TCTAGGCCCA ATTATTGGGC ACCACATATA TAAGCAAGGG GGCAGCGTTG
TCTAGGTTTA GGTTGGAGTT GATACAGAAA AATATTCAGA AAAGTCATCT
TATGATTGAC GCATATCTGA GTTCCCGCGT TCCATGATTG GATCGTTGAT
TGCATGTGTT CTGGCTGACT TGATTCCCCG CTTTGATTCT TGATCAATCA
GGGGTCGATC CGATCTCTAC TTTGTTCAAT CTACTTCTAC CACCTTACGT
CTTCCATCTG CTAATTACTC CGCCGCCGCC GCCGCCGCCG CCGCTGATCA
TCATTAGTCT AAATCAATCC ATCTGGCTAG CTACTACTCC GTTCACGTTA
GTCCAC
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wmc(7a5)
Plate reference : 7a5
WMC locus number : WMC Length of sequence : 268
Last updated : Thu, Dec 5, 1996 at 22:17
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert. No substantial microsatellite.
PCR Comments :
Length of sequence : 268 Consensus sequence is :
..
CCGGCCGCCG CGCTGGATCC TGACCTGATC CGCCTCGCCG CGACGTCCGC
CGCTTCCCGC CGTTCCCGCC TCCCTGTCGT TCCCCACTTT CGAGAGCCCT
GCCGCCGTCG TCCTACATGT CCCGATTGGA TCGGGGCTTC GGGAGCGCCG
CCGCTCGATC TAAAGCCAAA CGTGCACAGA GGGTTGACGA AGAAAAATAA
CTGCGGGTTA AATTAGCGAG AACCGTTTGT TCGACGGTGA GAGACAGGGC
AAGGCCCAAC TGGATCGC
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wmc(7b5)
Plate reference : 7b5
WMC locus number : WMC Length of sequence : 204
Last updated : Thu, Dec 5, 1996 at 22:18
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert. No substantial microsatellite.
PCR Comments :
Length of sequence : 204 Consensus sequence is :
..
GGCGCGTTCA TGGCGGAGAC AAGGAGGGGG ATCTGAGGAG GGAGGCAGAG
GAAGATGGGG GCGAGCAAAA CTAGGGTTGG GCGCCGGTGA CGTGGGGGTG
GCTTATAGGC GTCGGGGAGG TCAGGGATGG CCGCCACACA TGTCCCTGGC
GCCATGGATG GCTGCCACAT CCCTCCATCG TCCCTGTAGC GAGGGGAAGG
GGAT
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wmc(7c5)
Plate reference : 7c5
WMC locus number : WMC Length of sequence : 402
Last updated : Thu, Dec 5, 1996 at 22:19
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert (Rsa1 at 5' and 3'). No substantial microsatellite.
PCR Comments :
Length of sequence : 402 Consensus sequence is :
..
GTACGTTAGC GGGCCACGAG GAAGCCAGCC CACAAACAAC TACTAATAGC
GAAAGGACCT CATTTTGATG CTCACGGGGG TCGAGCAGGA CTTTTCCGTG
GAGACTATAT CTCGGTTAGC ATGAGTGCTC CTTCCGTATC ATTTATGGAT
TTCGGGCATA GCTATTTCTC GCGTTCAGCG AGTAAGTGTT CCAACTTGCT
AAAGCCAGTG AGCATATGGG GCCAGCCCAC GTGCGCGGGT AAGCACCTGC
CTGTTTCCCA TTTTGTTTTT TTCTAGTTTT TTCTTTACCT CGGTGGCGGA
CGGACGGAGG CGGCGGCGGC GACGGACGAC GGGTATCGGC GCGGGCGANA
GTGACTGAGG GCTTTTTCCT TTGCCGCCTT CCCTCTTTGG GGAGGCAAGT
AC
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wmc104(7d5)
Plate reference : 7d5
WMC locus number : WMC104 Length of sequence : 252
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert (Rsa1 at 3'). (GT)31 44 to 105. (2 loci both polymorphic?).
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
TcTcccTcATTAgAgTTgTccA at 21 length 22 bases, Tm 61
Reverse primer details :
ATgcAAgTTTAgAgcAAcAccA at 139 length 22 bases, Tm 61
Expected size of amplified fragment (Chinese Spring=) 140 bases.
Length of sequence : 252 Consensus sequence is :
..
CATTGACTAC TGCTTGGTGC TCTCCCTCAT TAGAGTTGTC CATGTGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
TGTGTAGAAC AAGTTCAAAA CTGTGCAAAT TCTTGGTATG GTGTTGCTCT
AAACTTGCAT ACACATCATG GATAATTTTG TTTTACTTGG CTTATGCAAT
TAATTCTCTC TCTCTCATAC TATTGTCTCC ATGGACTTGC AGATGATAGT
AC
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wmc(7e5)
Plate reference : 7e5
WMC locus number : WMC Length of sequence : 273
Last updated : Thu, Dec 5, 1996 at 22:20
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert. No substantial microsatellite. Bases 53 to 76 show homology to 19g5 bases 38 to 61 (24 in longest run, maxScore = 21).
PCR Comments :
Length of sequence : 273 Consensus sequence is :
..
GATCCGATGG TGGTGGTGGC TGGACCTGGA GTGGTCTGTG GCGGCGGCGG
GAAGTTGGGC GGCGGCCGGA GTTCGGGCGA ACTCGAACCC GTTGCTATGG
TGCGCGTGGA TGCCTGGGGT TAACTCCTAC AAGCCCTACG AGGTGCGGGG
AGGTCAAATG ATAGGACGGC AAGGTTGTTG CGTGGCCGGA GCCACGTCGG
CGGCGATCTC AGGCGGTGGC GCATGCGGGT GTGCTCGGTG CGGTTGCTAT
GGCGTGCGGC AGTGAGAACG GAG
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wmc105(7f5)
Plate reference : 7f5
WMC locus number : WMC105 Length of sequence : 244
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert (Rsa1 at 5' end). (GT)14 77 to 104. (2 loci - both polymorphic?)
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
AATgTcATgcgTgTAgTAgccA at 6 length 22 bases, Tm 62
Reverse primer details :
AAgcgcAcTTAAcAgAAgAggg at 176 length 22 bases, Tm 64
Expected size of amplified fragment (Chinese Spring=) 192 bases.
Length of sequence : 244 Consensus sequence is :
..
GTACAAATGT CATGCGTGTA GTAGCCACCT ATGTAATTGC ACGTTTAATT
TGGTGATGCA ACCGTGTCCT TATAAAGTGT GTGTGTGTGT GTGTGTGTGT
GTGTGATTTA CATCCCCCCC TAATTTTGTC TCGACCTCAT CTTTACCCCT
AAATAAAAAC AGTGCTCAAC TTTACCCCTC TTCTGTTAAG TGCGCTTATA
GAAATGCCCT TTCGTACAGT TGAAGCGGAT GCTGCAGCTG GTGG
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wmc(7g5)
Plate reference : 7g5
WMC locus number : WMC Length of sequence : 359
Last updated : Thu, Dec 5, 1996 at 22:22
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert (Rsa1 at 5' end). No substantial microsatellite. Bases 121-214 match part of 8c1 2nd insert.
PCR Comments :
Length of sequence : 359 Consensus sequence is :
..
GTACCATTTG GACTTCGTTC GATACCCCAA CGGTTAACCG AGGGACCGAA
AAGGCCTCGT GTGTGTTGCA GCCAACACCC CTCCAAAGTG GCCCAAAGCC
CACCTAAACC TCCTCCACCT AAACCGCACC TCATTTTGAC TCTCCTAGCT
CCCTGCACCT ATAAATATGT GGCTCTCCCC GAAAATCCGC GCAGATCAAA
CCCTAGCCCC ACTCCTCGCG CCGCCGGACA AAAACTCCCA CCGCACCGGA
CATGTCCGCC GCCCCGCCGC CACGTCGCTC CATCCAATCA GGACACGACA
CGTCATCTCC GCCGCCGCCT GCGTCCACTC CCCGCGCGCC ACCTGGCCTT
CTCTCTCTC
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wmc(7h5)
Plate reference : 7h5
WMC locus number : WMC Length of sequence : 265
Last updated : Jeu 27 Aož 1998 at 12:06
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert (Rsa1 at 5' end). Member of 1G1, 2F8 2D11, 2H11, 2A12, 6G1, 6H3, 6H4, 6B11, 7e3, 7h5, 7b6, 8a11, 5h10, 5d12, 11d4, 9H3 (GT)11 159 to 180. No room for primers Bases 213 to 248 show homology to 10h11 bases 78 to 113 (complement) (36 in longest run, maxScore = 94).
PCR Comments :
Length of sequence : 265 Consensus sequence is :
..
GTACAGATGG TAAGTTTGCT AAATACTAAA GTAAAGTGGA ATTTGTCCAT
GTTATACAAG TAAATTAAGG TGATTGTTTA TCATACAGGT AAGGTTGGAT
GAGGGGTGGT AGGGACAAAT GCTCCGCCTA GAGCATGTGT GTGTGAGATG
GAGTCTTAGT GTGTGTGTGT GTGTGTGTGT TTGTGTGTGT GGGTGTGTGT
GCGTGTGTGT GTGAGAGAGA GAGATGGAGT CTTAGTGTGT GTGTGTGTGC
GTGTGTGTGA TGGAG
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wmc(7a6)
Plate reference : 7a6
WMC locus number : WMC Length of sequence :
Last updated : 22 Nov 1996 at 8:44
Owner : Somers, Agriculture Canada Date at Agrogene : Public Domain : Yes
Comments : No sequence 22.11.96.
PCR Comments :
No sequence available for this clone
Go back to index
wmc(7b6)
Plate reference : 7b6
WMC locus number : WMC Length of sequence : 309
Last updated : Tue, Dec 10, 1996 at 12:23
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert (Rsa1 at 5' end).Member of 1G1, 2F8 2D11, 2H11, 2A12, 6G1, 6H3, 6H4, 6B11, 7e3, 7h5, 7b6, 8a11, 5h10, 5d12, 11d4, 9H3. (GA)8 184 to 199. No room for primers.
PCR Comments :
Length of sequence : 309 Consensus sequence is :
..
GTACAGATGA TAAGTTTGCT GACTACTAAA GTAAAGTGGA ATTTGTCCAT
GTTATGCAAG TAAATAAAGG TGATTGTTTA TGATACGGGT AAGGATGGAT
GAAGGGTGGT AGGAACAAAT GCTTCGCCTA GAGCATGTGT GTGTGAGATG
GAGTCTTAGT GTGTGTGTGG GGTGTGTGTG TGTGAGAGAG AGAGAGAGAG
TGAGGAGAGA GAGATGGAGT CTTAGTTTAT GTGTGTGTGT GTGAGAGAGA
GATAGAGTCT TAGTCTGTGT GTGTGGGAGG GGGTGTGCGT GCATGCGTGC
GTGTGTGTG
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wmc(7c6)
Plate reference : 7c6
WMC locus number : WMC Length of sequence :
Last updated : 22 Nov 1996 at 8:44
Owner : Somers, Agriculture Canada Date at Agrogene : Public Domain : Yes
Comments : No sequence 22.11.96.
PCR Comments :
No sequence available for this clone
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wmc(7d6)
Plate reference : 7d6
WMC locus number : WMC Length of sequence : 502
Last updated : Tue, Dec 10, 1996 at 12:24
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert (Rsa1) at 5' end, 3' end not located. (CA)12 4 to 27. No room for primers.
PCR Comments :
Length of sequence : 502 Consensus sequence is :
..
GTACACACAC ACACACACAC ACACACAAGC ACGTACAAAC AAGCGCACCA
TGATCCTCAA TGACGACAGA ACCTATGACT CCATGAGTGA AGAGGAAATG
GAAGTCCTTG AGCAAGTGGC CATGCAAAGA TGATCAAGTC TTTTGTGACG
AAGATACGAG CCCCGTCCTC GTTGTCTCCA AGGTCTTGAC ACTTCAACAT
CAACAAGAGG AAGACAAACG TTGCCACATC TTCCGCACCA AGGCAGGCAT
CAATGGTCGT TCCGTGAAGG TCATCATCGA CGGAGGAAGT TGTCACAACT
TGGCAAGTGA AGAACTATGC CCCAAGCTAC AATTGATCAA GATGAAGCAT
CCTCGTCCCT ACAAGGTCCA ATGGCTAAGC GACTCCGCCA CTATCCAAGT
GGAGCACACC GTGCAAGTTC CTTCCAGATA GGAGCATATG AAGACACTTT
GGAGTGTGAT GTGGTTCCTA TGTCCGTTTG CCATCTCCTT CCTTGGACGA
AC
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wmc106(7e6)
Plate reference : 7e6
WMC locus number : WMC106 Length of sequence : 480
Last updated : Mar 22 DŽc 1998 at 9:42
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at 5' end. 3' end not located. (CA)21 147 to 188. Primer dimer with these primers. Redesign primers. Bases 60 to 144 show homology to 25f8 bases 13 to 97 (85 in longest run, maxScore = 75).
PCR Comments : tested 51C anneal, no product;
Forward primer details :
cTAATTggATgcAggTgAcA at 2 length 20 bases, Tm 59
Reverse primer details :
ccccAcTTcAAcTcgcTATg at 299 length 20 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 318 bases.
Length of sequence : 480 Consensus sequence is :
..
GCTAATTGGA TGCAGGTGAC ATGTCTCTCC TTTTCAATTT CTCTTATCGC
AGGTTTGATC GGATGGAATT CACACACTTG GATCGAAGGA TTTGTGATGT
GAGTATATTT GTTCAGAAAT ACACATTTAA ATTTGGTTAG TTTCTCCACA
CACACACACA CACACACACA CACACACACA CACACACATT TTCAAACTAC
AGTTGCCGAT TTTGAATATG GCAAATGAAA CGAGAGTTAC AGGGAAACTT
ATAACCCGCA CAACAAAATT GAAAAAAAAT TAATCGACCA GGAGACCGCA
TAGCGAGTTG AAGTGGGGGA TGTATCCGGT GCACGGATGA CATAGAATAT
TTTTTTAGAT CTGAAAAAAG TCTAGCATGT TAATGTAATA TCAATGTATG
ATGTCACAAA ATTTCGTATA GAAATTTGAA AAAAAATTGA GATAAAAATG
ACAAATTTGA CATCAGTGTG ATAATGGGCC
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wmc(7f6)
Plate reference : 7f6
WMC locus number : WMC Length of sequence : 128
Last updated : Jeu 27 Aož 1998 at 12:04
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at 5' end (Rsa1), 3' end not located (entry contains _). No substantial microsatellite. Bases 37 to 53 show homology to 10a8.2 bases 288 to 304 (17 in longest run, maxScore = 31).
PCR Comments :
Length of sequence : 128 Consensus sequence is :
..
GTACAAGAGA AACACGCATA GCTCGGCCCC CGACCACCCA CCGTAACCGG
GAACTCCCTA AAATTTTCCT CGCCCTCGCT TGTACGATTC GGGCCGGCTT
CGGCAAAGGC GGCGGGAATG A_CGCGCC
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wmc107(7g6)
Plate reference : 7g6
WMC locus number : WMC107 Length of sequence : 208
Last updated : Mar 10 Nov 1998 at 17:36
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at both ends (Rsa1 at 3'). (GT)15 82 to 111. Polymorphism is too complex to realistically score. Duplicate of 3a11(1). Bases 1 to 83 show homology to 24f1 bases 69 to 151 (complement) (83 in longest run, maxScore = 108), true duplicate, 7g6 has priority.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
gAATTcAggcccTTcTcggA at 12 length 20 bases, Tm 65
Reverse primer details :
cATTgAAccTcgcATAAcgg at 186 length 20 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 194 bases.
Length of sequence : 208 Consensus sequence is :
..
CACGAGTTTA CGAATTCAGG CCCTTCTCGG AGAAAGTAAT AGCCCTACGT
CTCGATGCCC TGGGGCGGTC GGCTGGATTA TGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG TTTACAAAAG ATGCGAACCC CTGTCCTGGA GGAGGGGGTG
GCTTATATAG AGTGCGCCGG GACCCCGGCC CCCCTCCGTT ATGCGAGGTT
CAATGTAC
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wmc(7h6)
Plate reference : 7h6
WMC locus number : WMC Length of sequence : 381
Last updated : Thu, Dec 5, 1996 at 22:30
Owner : Somers, Agriculture Canada Date at Agrogene : 22.11.96 Public Domain : Yes
Comments : Trimmed to insert at 5' end. 3' end not located. No substantial microsatellite.
PCR Comments :
Length of sequence : 381 Consensus sequence is :
..
CGCGGCGTCC ATGTTCCGGG GCTTTGTGGG CTCTTCGCCG CACGCGCGAC
AGGGGACACC GCAGCAGCAG ATGGACCAGA ACGATGCGAA CCTGAACGAG
CTGATGAACT CTCTGGCTGC TGGCGGCGGC GTCAATGCCG CGGCGATGTT
TGGCGGCGCT AACGGCGGTC CCGCCGGGAT GTTTGATCCG AGGATGTGCG
ACATGGATCA GCACGAGGTG AAATTCAGCC AGGGAGGAGG TGGTGTTGGT
GGCAACGGCG GTGGTGCTGG CGGCGGCGCC GGCGGCGACA TGACGCGGGA
CTTTCTTGGC GTGGGTGGAG GCGGCATCGT GCGCGGGATA TCGACACCGA
GAGGAGACCA CCACCAGAGC AGCAGCGACA T
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wmc(8A7)
Plate reference : 8A7
WMC locus number : WMC Length of sequence : 285
Last updated : Tue, Feb 4, 1997 at 21:55
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR156. Trimmed to insert 5' and 3'. No substantial microsatellite.
PCR Comments :
Length of sequence : 285 Consensus sequence is :
..
GTAGAATCCG CCAGTGCAAA TTCAAAGAAC ATTCTTCAAG ATCGGTAAGA
CCAAGCACAT CACATAAAGA TTTCGGAATT GTAGAAACAC TAGCACCCAA
GTCACACAAA GCAAAACACT CATAATTTTA AATCTTGACT TTGATAGTAG
GTTCCCATTC ATCATGCAAT TTTCTAGGAA TTGAAACTGT TGGGGAACGC
AGTAATTTCA AAAAAAATCC TACGCACACG CAAGATCTAT CTAGCTGATG
CATAGCAATG AGAGGGGAGA GTGTTGTCCA TGTAC
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wmc(8b7)
Plate reference : 8b7
WMC locus number : WMC Length of sequence : 418
Last updated : Tue, Feb 11, 1997 at 6:14 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR157. Trimmed to insert 5' and 3'. (CT)30 36 to 95. No room for primers.
PCR Comments :
Length of sequence : 418 Consensus sequence is :
..
GTACACTATC ATCATCCTTC ATCCTTCATC CTCATCTCTC TCTCTCTCTC
TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCATGG
TTGTTATCCA GCTGAGCAAC AATGGCGACC CACACGCATC GCCAACAAAA
ATGGGAAGAA GAAGAAGAAG AAGGAAAGCC AGCTCGGATC GACTGCCCAC
TCGGGGGTTT CAACGAGTCG GGACTGAAAC TGACAAGGGC AAGACAGCAC
GCAACATTCC GTGCAAGAAG GCACAGCCTA CGGGCCATGA ACGACCCTGC
CTGCATATGC CCTCGTTTTG TTGCTCTAAA ACGGGGCTCG AGACTCCATC
TCCAGCTGTC CTCCACCTCT CCAGCTGGCT GCACCGCGCA GTTTGTTCAC
TCACGCTGCA GCTATACC
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wmc108(8c7)
Plate reference : 8c7
WMC locus number : WMC108 Length of sequence : 151
Last updated : Tue, Aug 26, 1997 at 5:35 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR158. Trimmed to Rsa 1 sites at 5' and 3' ends(CT)13 51 to 76. Bases 50-149 (ie. 3' side of microsatellite) match part of 3G11.
PCR Comments : 51C anneal, product;
Forward primer details :
TcgAAgAgTAgAgTcgcTcATA at 9 length 22 bases, Tm 59
Reverse primer details :
AcATAcgTgTcTgcTTAAgTgg at 106 length 22 bases, Tm 59
Expected size of amplified fragment (Chinese Spring=) 119 bases.
Length of sequence : 151 Consensus sequence is :
..
GTACATGTTC GAAGAGTAGA GTCGCTCATA CGCACTCTGT CTCTCAGAAT
CTCTCTCTCT CTCTCTCTCT CTCTCTCACA CACACACACA CCAGTAACGT
GATGCCCACT TAAGCAGACA CGTATGTTAC AATTTGTGCA CCCACGGGTA
C
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wmc(8d7)
Plate reference : 8d7
WMC locus number : WMC Length of sequence :
Last updated : Wed, Aug 20, 1997 at 1:44 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR159. Trimmed to insert at 5'. Trimed to Rsa1 at 3' end. No substantial microsatellite. Matches 3d5.
PCR Comments :
Length of sequence : Consensus sequence is :
..
GCCGCCGCA GGTCCTTGCC GCAGCTGCCG CGTCCTATCC TCCATGAGCC
ACCGCCGCAG GTCCTTGTCG GCGCCGCCGC CACACTCTAT CCTCCGTGTG
CCGCCGCCGC ATGTCCTTGC CGCCGCCGTG TCATCCTCCT CGCGCAACTG
CTGCCGCTAC TCTACCTCAT GCACTACTGC TGCATCCTTC GCAAGCTAGC
CAGCCCAATT GCAAGCTAGC CAGCCCGATT AGAATCCATC AAGTTGTGTG
CATGTCTACT TGCTAGCTAG TAC
Go back to index
wmc(8e7)
Plate reference : 8e7
WMC locus number : WMC Length of sequence : 461
Last updated : Lun 2 Nov 1998 at 9:55
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR160. Trimmed to insert at 3', and to Rsa1 at 5'. No substantial microsatellite. Bases 280 to 307 show homology to 10b1 bases 13 to 40 (28 in longest run, maxScore = 35).
PCR Comments :
Length of sequence : 461 Consensus sequence is :
..
GTACCGATTC GGGCCGGCTT CGGCAAAGGC GGCGGGGATG ACGCGCGTGG
CCGGATGCCC CGTCGTCTCG CTTCCCGTCT TGCACCCCCA CAGGTGCTTG
AAGTAGTCCC GGAGTTCGAC CGCGTCGACC GTCGACGGGA AGTAGGCGTG
CTGCGTCCGC CGCACCGCCA ACTCACTCTC CGGCGGCTCC TTCTCCCCGG
CGTCCTTGGC CATTCCCTTG CCTCTGCTAG TCTTGGGTGC CATGGCGACT
GCGGGAGGCG AGGAATGAAG GATGGCGAGG GCGCGGCGGC GGCGAGCGAA
GGCAAGAGCT TGAGAAAGAG GAAGAAGGGG ACGGCGGTTC CGAGATTGGC
GGCCTGCATA CGACTAGAAA CCCAACCTGT TGTTGGGCCA GGATGCAGGC
CCGCAAGCCC AATAGGCCCC ACAGGGCAGA GTAGCAGAGA TAGGCCTAGA
AGGCCTGCTT T
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wmc(8f7)
Plate reference : 8f7
WMC locus number : WMC Length of sequence : 117
Last updated : Tue, Feb 11, 1997 at 3:33 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR161. Trimmed to insert at 5' and 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 117 Consensus sequence is :
..
TAGAGGTGAC GGCGTGGGCA TTTGGCGGTG GACGTGTTTT GGGCGTTGGT
GTTTACAGTG GTGTTCATAG GCCTCAATTT ACATCATGTT TGTTGTTTTG
GATGCGAGAA TTATCGG
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wmc(8g7)
Plate reference : 8g7
WMC locus number : WMC Length of sequence : 301
Last updated : Tue, Feb 4, 1997 at 21:55
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR162. Trimmed to Rsa1 at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 301 Consensus sequence is :
..
CAACTTACTA GGCCCACAGG TCAGCCTCCG AAACGGTGCG CCACAGATGT
CAGTGGGAGG AATCATTTTT GGGGTGGGTG AAGCTAGAAT ATCCGAGATT
GAAGAAGAAG CACACAACCA CCACCTCCGC CACTCAACGT TGCACCCTTC
CGTCCTTTCG TCTTCGCGGG AGCACCACCG GAGAGCCGTC GCCGCCGACG
CCCGAGACCG CCGCCGCCGT CCTCTGTTCT CTGGTGAGCA CGCGCGCATA
GAGTAGGCTC CATCCAATCA CGAGCTGCCA CGTGGGCACC AGCTACAGTA
C
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wmc(8h7)
Plate reference : 8h7
WMC locus number : WMC Length of sequence : 790
Last updated : Lun 30 oct 2000 at 16:59
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR163 No overlap between forward and reverse sequences. Trimmed to insert at both ends. (GA)8 608 to 623, (GA)12 693 to 716, (GT)13 449 to 474, (CT)9 429 to 446. Too difficult to make primers. Bases 505 -611 match 4a10, also 3d2. (ie 5' side of microsatellite in reverse sequence), bases 601-723(ie 3' side of microsatellite in reverse sequence and 5' side of second microsatellite) match part of 11F12. Bases 535 to 564 show homology to 21f12 bases 75 to 104 (30 in longest run, maxScore = 81). Bases 698 to 759 show homology to 25d6 bases 47 to 108 (62 in longest run, maxScore = 50). Duplicate with 21f12, 8h7 has priority. Duplicate with 25d6, 8h7 has priority. Bases 544 to 580 show homology to TW4g01.1 bases 1 to 37 (complement) (37 in longest run, maxScore = 27). Bases 517 to 571 show homology to TW2a05.2 bases 89 to 143 (55 in longest run, maxScore = 52). Bases 685 to 760 show homology to TW2a08 bases 176 to 251 (76 in longest run, maxScore = 88). Bases 722 to 760 show homology to TW2g09.1 bases 278 to 316 (39 in longest run, maxScore = 77). Bases 538 to 593 show homology to TW7f04 bases 129 to 184 (56 in longest run, maxScore = 47).
PCR Comments :
Length of sequence : 790 Consensus sequence is :
..
CCTCTACCTC GCCTCGTCGT CTGGCGACCG GCGCCGCCGC CGGCGACCAC
GAGATAAGCT TCGCTGCCCT TCTCCTCCTC CTGTGGTTTC TATGCCTTCC
TCGTCCCACC TCCCTGTCTC TCTTTCTCTG TTCAAACAGG AGCGCCCGAC
ACCTCCCATG GAGTTCCTTG CAACCGCCTC GCTGCCCGGA TCCATGCCGT
CCCGACCTCC TTGTCGCCCG CGCGCCTGCA GCAACCAGGG AACCTTGACG
CCTCCTCCTC CTTGCCCTGC TCCACTTTGT GGTCGAACAG AGGCTCGAGT
CCGAACCTCC CATCGCCAAC ATCACCCATG GTCAGCCGCC GGAGTTCCAG
GTCGCCGCTG CTTTGCATCC CCTGTTCCTT GCACTCTCCA TCCCGTCCCC
TTCCCTAACC TCTCTCTCAT GCCCCGGTCT CTCTCTCTCT CTCTCTCCGT
GTGTGTGTGT GTGTGTGTGT GTGT
(break)
CGCGTGCGA CAGAACTGAA
GATTGTCAGA GAGAGAGAGA GAAAGAGAGA GATGGAGGGA GAGGGAGAGG
GACCAACAAG GTTTGTGTGT TGGATGCGTG CGACAGAACT GAAGATTGTC
CGAGAGTGAG AGAGAGAGAG AGATGGAGGG AGAGGGAGAG GGACCAACAA
GGTTTGTGTG TTAGATGCGT GCGACAGAAC TGAAGATTAT CAGAGAGAGA
GAGAGAGAGA GAGAGATGGA GGGAGAGGGA GAGGGACCAA CAAGGTTTGT
GTGTTGGATG CGTGCGATAG AACTGAAGAT TATCAGAGAG AGAGAGA
Go back to index
wmc109(8a8)
Plate reference : 8a8
WMC locus number : WMC109 Length of sequence : 199
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR164. Trimmed to insert at both ends. (CA)14 54 to 81. Bands or right size are a little weak to be sure of polymorphism.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
AATTcgggAAgAgTcTcAgggg at 6 length 22 bases, Tm 67
Reverse primer details :
TTcgAAgggcTcAAgggATAcg at 173 length 22 bases, Tm 68
Expected size of amplified fragment (Chinese Spring=) 189 bases.
Length of sequence : 199 Consensus sequence is :
..
GTACTAATTC GGGAAGAGTC TCAGGGGCTA CTGTCTACAC ATGGGCTTCT
CCTCACACAC ACACACACAC ACACACACAC ACCCCCGTAC TCGATTGAGC
CGGCGTCGGG GCCCCAGCCC GCGTCGTCGA TGTAGAGCTT GCCGCGACGA
CTCTTGGTCA TCCGGCCCAC AGCGTATCCC TTGAGCCCTT CGAAGCTGC
Go back to index
wmc(8b8)
Plate reference : 8b8
WMC locus number : WMC Length of sequence : 269
Last updated : Tue, Feb 4, 1997 at 21:55
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR165. Trimmed to insert 5', and Rsa1 at 3'. Matches first insert in 6f11. Numerous small microsatellites.
PCR Comments :
Length of sequence : 269 Consensus sequence is :
..
CACACACACT AAGACTCCAT CTCTCTCTTT CACACACACA CAAACTAAGA
CTCCATCTCT CTCTCTCTCT TTCTCTCTCT CTCTCTCACA CACACACACC
CCACACACAC ATAAGACTCC ATCACACACA CACATGTTCT AGGCGGAGCA
TTTTTTCCTA CCACTCTTCA TCCAACCTTA CCCGTATGAT AAACAATCAC
CTTAATTTAC TTGCATAACA TGGACAAATT CCACTTTACT TTATTAGTCA
GCAAACTTAT CATCTGTAC
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wmc110(8c8)
Plate reference : 8c8
WMC locus number : WMC110 Length of sequence : 277
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR166. Reverse sequence only from Lark. Trimmed to insert 5' and Rsa1 at 3'. (GT)11 232 to 253.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
gcAgATgAgTTgAgTTggATTg at 108 length 22 bases, Tm 61.0
Reverse primer details :
gTAcTTggAAAcTgTgTTTggg at 256 length 22 bases, Tm 60.0
Expected size of amplified fragment (Chinese Spring=) 170 bases.
Length of sequence : 277 Consensus sequence is :
..
AGCGACCGTT CCTGGTTTGC GCCAAAAGAG AAGGAAGAAA GAGAGAGAAA
CAATTTTTAC GATGAGATTC AGATCCAACC GGGGCAGTGC ACCGTGTCAG
TGCTAAAGCA GATGAGTTGA GTTGGATTGA AAGATGCCAT TCTTTTCAGA
TTGGAGTTGT CACGGCTTTT GCACGACAGC CCCCATGCTG TTTTAGGACA
ATCTCCTGTG TGTGTGTGTG CGCGTGCGTG CGTGTGTGTG TGTGTGTGTG
TGTTACCCAA ACACAGTTTC CAAGTAC
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