Wheat microsatellite WMC 25/06/01
wmc(8d8)
Plate reference : 8d8
WMC locus number : WMC Length of sequence :
Last updated : Tue, Feb 4, 1997 at 21:55
Owner : Flore, Verneuil Date at Agrogene : Public Domain : Yes
Comments : AGR167. No sequence from Lark 6.1.97.
PCR Comments :
No sequence available for this clone
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wmc111(8e8)
Plate reference : 8e8
WMC locus number : WMC111 Length of sequence : 372
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR168. Trimmed to Rsa1 at both ends. (CA)9 152 to 169, (CA)15 176 to 205.
PCR Comments : 61C anneal, product;
Forward primer details :
ATTgATgTgTAcgATgTgccTg at 56 length 22 bases, Tm 63
Reverse primer details :
cATgTcAATgTcATgATgAAgc at 276 length 22 bases, Tm 61
Expected size of amplified fragment (Chinese Spring=) 243 bases.
Length of sequence : 372 Consensus sequence is :
..
GTACTTAGCG GATAAGAAGG CCGGCAAAAC AAAAGGTATA TGTGATATAC
ATGTAATTGA TGTGTACGAT GTGCCTGAGG GGATTGAGTA ATGCAAGCGA
ACCTTATGTC TTAAAAAATG GGAGGGTGCA AAGTGTAGCC GAGGAAGGCG
GCACACACAC ACACACACAA ACGCGCACAC ACACACACAC ACACACACAC
ACACATACCC GCCCGCCCGC ACGCACACAC GCACATCATG ACGCAAAATT
GCGGAGTTCA AGGACATATG ATGTTGCTTC ATCATGACAT TGACATGTCA
AACTGAAGGC GCTGCAAAAC TCTAAATATA TGGGAGATAT GAGAAATGGG
AGAAAAATAT TGGCACTTGT AC
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wmc(8f8)
Plate reference : 8f8
WMC locus number : WMC Length of sequence : 447
Last updated : Thu, Aug 21, 1997 at 11:07 am
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR169. Trimmed to insert at both ends. No substantial microsatellite. Matches 5f1.
PCR Comments :
Length of sequence : 447 Consensus sequence is :
..
CCGCATGTTG CATTTTTAAT TATCTTCCTA AATAGTTATG TCAGACAATT
ATTATCCACT ATCATCATCA TTATATTTAT ATCAGTCTTG CTATAAGTCT
GAGTCGATGC TATATATGTC CGTCGGATCT TACATCAAGA TCCGTGCAAA
ATTTTCTTTT CAGATTTTCT TTTTTCTCTC TTAAATCTCA GTCGAGTGAG
ACATAGCGAC ACCATAAAAC AGGGACTCGA GCGTCATTAA TGGAGAAGTT
GGGGGAGATG TGGGCGGCGG ATGGGCGTGG CGTGGTTCGG CGCGGCGGCG
GCGAGAAGAA GAAGAAGCAA GAGGAAGTGA AGGGAGTAGG GGAAATGGGC
GCGCGTGCTC CGCCGCCCCC CTCCTCCCGC CTACTTATAG GCTCGTGGGC
TGAGAAGCCG ATGGGGCGGA CGTGGGATTA ACTGTGCCCA GGACCCC
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wmc112(8g8)
Plate reference : 8g8
WMC locus number : WMC112 Length of sequence : 473
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
PIC Value : 0.87
Comments : AGR170. Trimmed to Rsa1 at both ends. (CA)17 202 to 235, (CT)34 134 to 201. Good clear polymorphism (1 locus).
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
TgAgTTgTggggTcTTgTTTgg at 105 length 22 bases, Tm 66.0
Reverse primer details :
TgAAggAgggcAcATATcgTTg at 328 length 22 bases, Tm 66.0
Expected size of amplified fragment (Chinese Spring=) 245 bases.
Length of sequence : 473 Consensus sequence is :
..
GTACAAAATT ACAAAGAACG AAGAATTGGG TTCTCTCAAT TCCCTAATAT
CATCTTTCCT AGCCATCATC ACAAATCCCT ATTTCCCCCA TGTCTTGCTT
AATTTGAGTT GTGGGGTCTT GTTTGGCTTT GGGCTCTCTC TCTCTCTCTC
TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
TCACACACAC ACACACACAC ACACACACAC ACACACTTTG TTGGTGTGGA
TCTCGCTCAA GTGTTTCTCG CTCTTGCTAT TTCTTTTTCA AATTGTCCAT
TAATATCTCT TCGGGTATCG AAGGGAGCAA CGATATGTGC CCTCCTTCAT
AGTAGAATGT GAGAAGATTA GCACACCGGT GATTTGAACA TCATGATCAA
ACAACCAAGG TTTTCCCAAC AACAGTTGTA GACTTACATT GGCATGACGT
CACACTCCAC TTGATCCGAG TAC
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wmc(8h8)
Plate reference : 8h8
WMC locus number : WMC Length of sequence : 224
Last updated : Mar 22 DŽc 1998 at 9:41
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR171. Trimmed to insert at both ends. (GT)11 202 to 223. No room for primers Bases 103 to 122 show homology to 2c4.2 bases 308 to 327 (20 in longest run, maxScore = 60).
PCR Comments :
Length of sequence : 224 Consensus sequence is :
..
GTCAAGCATC GACTCACTAC TAGGGTCCAA CTAGGATCCC CAGTTGCATG
TCGATAATCG ACTCGCAACT GGGGTGTGTG TGTTTCTTTT ATCAAAGTGT
CGCCAGTTGA ATGTCAACCA TCCACTCGCA ATTAGGGGTG TGTGTGTGTT
TGTTGAGAAC CCCCAGTTGC AAGTTGACCA TAGACTCGCA ACTAGGGAGA
TGTGTGTGTG TGTGTGTGTG TGTG
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wmc(8a9)
Plate reference : 8a9
WMC locus number : WMC Length of sequence : 267
Last updated : Tue, Feb 4, 1997 at 21:55
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR172. Trimmed to Rsa1 at both ends. Matches 8D9, 9F5, related to 11b3. No substantial microsatellite. Bases 104 to 135 show homology to 12g8.2 bases 121 to 152 (complement) (32 in longest run, maxScore = 76).
PCR Comments :
Length of sequence : 267 Consensus sequence is :
..
GTACCTCGGC GGCGGACGGA CGAAGGCGGC GGCGGCGACG CACGACGGTT
ATCGGCACGC GGGCGAGAGT GAGAGTGTGA GTGAGAGGGA GGGTCGGTCG
TGCGCGTGGG GATAAGGTAG GGATAGTTGT AGCGCGTTTT CCAAAACGCG
CTACAGCTAA TCTGAATAGC AGTAGCGCTT TGCATATAAA CCGCTACTGC
TAAGTGTAAC TATACAAAAA ATACGTCAAT GCAAAAAACA TTGGCCATCA
ATGATCTTTT TGTGTAC
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wmc(8b9)
Plate reference : 8b9
WMC locus number : WMC Length of sequence : 281
Last updated : Tue, Feb 4, 1997 at 21:55
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR173. Trimmed at both ends. No substantial microsatellite.
PCR Comments :
Length of sequence : 281 Consensus sequence is :
..
GTACTCCCTT AGCTTCCTCG TCAGTTCGCG AGCGTTTGGT CAAGCGTAGA
ATGTAGTCCT TCGCGTAGTG CTTGTGCATC TGCTATAGTA TCATGCTTGT
GTGTGCCTGT GTGGAGCAGC TTTGTAGCTT GTTTGACGTG TGCTTTGTTG
CAATAAATCA TTTTCTCGTG CCTCTTTTCT TGTTGTTGCT GTTGTTGTTG
TTGCTGTTGT TGTCGCTGTC GTTGTTGTTG TCGTTGTCGT TGTCGTTGTC
GTCCTCGTCG TCGTCCTCGT CGTCGTCGTT G
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wmc(8c9)
Plate reference : 8c9
WMC locus number : WMC Length of sequence :
Last updated : Tue, Feb 4, 1997 at 21:55
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR174. Trimmed to insert at both ends. No substantial microsatellite.
PCR Comments :
Length of sequence : Consensus sequence is :
..
CCCAATCGGT TCTCGGAGGC GTTGGATCTG GCGAGTGGAG GTTGGCGAAC
AAGCCGGAAA ATCCCTCTGC TTCTGTCGAT CTGGGCGGCG GCGTTGGCGG
CCGGAGTGGC ACAGCTCGGA GGCAGTCTAA GTTTCAGTTC TGGTTACTGG
AGAGTCTTTC TCCTGCGGTA AAATCCCAGA ATCGGAATCG GGCAGTGCTT
CTTGGAGGCG GGCGGCGTTG GCGACGGTGT GGCGGCGGTG GATACAAGAC
CTCGCGATAA GTCCCTCCCT TCCCTCCCCT TGTCGAGGCC AGTCTGCTCC
TCGAGGGAAA CCATGTCTCC CTCGGAAGGC TCCAGCGACA CTGGCATCAA
T
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wmc(8d9)
Plate reference : 8d9
WMC locus number : WMC Length of sequence : 267
Last updated : Tue, Feb 4, 1997 at 21:55
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR175. Forward sequence only from Lark. Trimmed to Rsa1 at both ends. Matches 8A9, 9F5, related to 11b3. No substantial microsatellite.
PCR Comments :
Length of sequence : 267 Consensus sequence is :
..
GTACCTCGGC GGCGGACGGA CGAATGCGGC GGCGGCGACG CACGACGGTT
ATCGGCACGC GGGCGAGAGT GAGAGTGTGA GTGAGAGGGA GGGTCGGTCG
TGCGCGTGGG GATAAGGTAG GGATAGTTGT AGCGCGTCTT CCAAAACGCG
CTACAGCTAA TCTGAATAGC AGTAGCGCTT TGCATATAAA CCGCTACTGC
TAAGTGTAAC TATACAAAAA ATACGTCAAT GCAAAAAACA TTGGCCATCA
ATGATCTCTT TGTGTAC
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wmc(8e9)
Plate reference : 8e9
WMC locus number : WMC Length of sequence : 210
Last updated : Tue, Feb 4, 1997 at 21:55
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR176. trimmed to Rsa1 at 5', and to insert at 3'. Small dispersed microsatellites - no room for primers.
PCR Comments :
Length of sequence : 210 Consensus sequence is :
..
GTACGTGAGC GCGCGTGTGT GTGTGCGGTT GTGTGCCTAT GTGTTTCCTG
CGTGTGTGCT GCTGTTGTGT GTGTGTATGT GTGTGTGCTG CGTGAAGTGT
GTGTTGCTGC GTGTGTGTGC GCGTGAATGT GTGTTGTTGC GTGTGTGTGT
GCACACGCGC GCGCGTGTTG TAGCGTGTGT GTGCGCGTGC GTTGTGTGTT
GGTGCATGTG
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wmc113(8f9)
Plate reference : 8f9
WMC locus number : WMC113 Length of sequence : 117
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR177. Trimmed to insert 5' and to Rsa1 at 3'. (GT)18 36 to 71. Redesign primers if possible.
PCR Comments : 51C anneal, smear;
Forward primer details :
cAAgTTgAccATcgAcTcATAA at 8 length 22 bases, Tm 59
Reverse primer details :
AAcTggAAgccAcgAcAAcATA at 73 length 22 bases, Tm 63
Expected size of amplified fragment (Chinese Spring=) 87 bases.
Length of sequence : 117 Consensus sequence is :
..
GTAGTTGCAA GTTGACCATC GACTCATAAT TAGATGTGTG TGTGTGTGTG
TGTGTGTGTG TGTGTGTGTG TCTATGTTGT CGTGGCTTCC AGTTGCAAGC
CGCGCATCAA CTCGTAC
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wmc(8g9)
Plate reference : 8g9
WMC locus number : WMC Length of sequence : 205
Last updated : Tue, Feb 11, 1997 at 6:27 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR178. Trimmed to insert at both ends. (CA)12 149 to 172, (CA)15 175 to 204. No room for primers.
PCR Comments :
Length of sequence : 205 Consensus sequence is :
..
GTCTTGCAGC AAACGGCAAA GCAACCAAAT AGGCCAGCCC AGTGTGCCCC
AGATTGCAGA GGTAACTGCC ACATGGCAGC TTTGCCGTCT ATCAGCAGAC
CGCAAAGTGC TTGTATTGCC CCTGTTTTTT CTTAGATTCA ATTAGTTTCA
CACACACACA CACACACACA CAAACACACA CACACACACA CACACACACA
CACAC
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wmc(8h9)
Plate reference : 8h9
WMC locus number : WMC Length of sequence : 189
Last updated : Jeu 5 Nov 1998 at 16:32
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR179. Trimmed to insert at 5' and to Rsa1 at 3'. Matches 6g4, related to 3f3. (GA)10 17 to 36, (GT)8 1 to 16. Bases 86-189 match part of 14C4. Bases 43 to 112 show homology to 19f1 bases 19 to 88 (70 in longest run, maxScore = 52). Bases 43 to 96 show homology to 10a12 bases 96 to 149 (complement) (54 in longest run, maxScore = 72). Bases 40 to 114 show homology to 10e2 bases 177 to 251 (75 in longest run, maxScore = 97), true duplicate with 10e2, 8h9 has priority.
PCR Comments :
Length of sequence : 189 Consensus sequence is :
..
GTGTGTGTGT GTGTGTGAGA GAGAGAGAGA GAGAGACAAA GAGAGAGAGG
AGCATCCGTA ACACAACAAC CATCTCTCTC GATTCGTCCG TCCCTCGCAC
GATCGCATGC AACACATGCA TCAACGCGCA CATTTTGACA CCCTCACTCG
GCCCCTGCCC ACCTCAAGGC CCGCACAATC TCTTCGTAC
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wmc(8a10)
Plate reference : 8a10
WMC locus number : WMC Length of sequence : 270
Last updated : Tue, Aug 19, 1997 at 5:37 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR180. Trimmed to Rsa1 at 5' and to insert at 3'. (CT)12 238 to 261. No room for primers. Complement of bases 10-100 or so match 8h7
PCR Comments :
Length of sequence : 270 Consensus sequence is :
..
GTACATGAAA ACCTGCAGAG TCTGATGGGA TGAATACTTT GACGCTCAGA
GTTAAACTGG AGCATGACCT CGTTGGAATT GAACTGCTGA ATGTTCCATT
TGAGGAGTTC TTCCAGTTTT CAATCAAAAG GCCCTCGATA AATCAACGAT
CACTTGCTAC TGTCTGTAAG TAGTCTTCAA TTCTGTCGCA CGCATCTAAC
ACACAAACCT TGTTGGTCCC TCTCCCTTTC TCTCCATCTC TCTCTCTCTC
TCTCTCTCTC TCCCACAATC
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wmc(8b10)
Plate reference : 8b10
WMC locus number : WMC Length of sequence :
Last updated : Tue, Feb 4, 1997 at 21:55
Owner : Flore, Verneuil Date at Agrogene : Public Domain : Yes
Comments : AGR181. No sequence from lark 6.1.97.
PCR Comments :
No sequence available for this clone
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wmc(8c10)
Plate reference : 8c10
WMC locus number : WMC Length of sequence : 324
Last updated : Tue, Feb 4, 1997 at 21:55
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR182. Trimmed to insert at 5' and to Rsa1 at 3'. No substantial microsatellite.
PCR Comments :
Length of sequence : 324 Consensus sequence is :
..
CGGTGGTCGG GGTAGATGAC GGCGACGGGC TGGTGCTGGA CGAAGATGAA
GGGGGTGGAC GGGCAGCGGT GGCGGCTATG GAGGTAGCGG CGGCAGCGGC
CGAAGAAGAG CGGCGGCGGC GGCCTGACGG CAGCGGTAGC GGCTAGGTTA
GTAGTGCGGC GGCGATGTTC GAAGTAGGCG AGGAACCCGA CAGCGCGAGA
AGACTGGTGC GGACAGCGTT CCCATGCCAA GGGAGGCTGA TACCATGTTA
GAAGGGAGAG AGAGATTGTT GCGGAATATG ATGGATGTAT TATTGAGTCT
CGAGGGCGAG TATATATTGA GTAC
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wmc(8d10)
Plate reference : 8d10
WMC locus number : WMC Length of sequence : 258
Last updated : Tue, Feb 11, 1997 at 6:30 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR183. Forward sequence only, sequence begins with EcoR1 site in vector. Trimmed to insert at 3' end. Duplicate of 6e12, 7a3 (3rd insert), 5a10, 11a3, 9G4 . (GA)8 57 to 72, (GT)10 37 to 56,.
PCR Comments :
Length of sequence : 258 Consensus sequence is :
..
GAATTCCTCG AGGCGCGTGT GTGTGCGTGT GTGCCTGTGT GTGTGTGTGT
GTGTGTGAGA GAGAGAGAGA GATAGAGAGA GACCCATCGG TCGATGCTCA
TAAATACATC TTTCAGCCAT ATGCATTGCT GATGCTCAGT AAAAACTTAT
ATAGTTGACA CAAACATATA GAACATCATA GCACACTGAA CTTGCATACA
AAAATTTCAC GCAGGCGACA CAATCATGAT GGAAGCAGTG GATCGCTATG
GGTAGGGC
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wmc(8e10)
Plate reference : 8e10
WMC locus number : WMC Length of sequence : 421
Last updated : Tue, Feb 4, 1997 at 21:56
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR184. Trimmed to Rsa1 site at 5' end, and to insert at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 421 Consensus sequence is :
..
GTACAAGGCC AACGCCGCCG CCGCCCCCGA CGCCCACGAG GCCCAGCCGC
CGCAGCACCA CCACCAGCAG CACTACCCCG ACCCCAGGAG GTAACATCCC
CCGATCTGAC CTCCCCCTTC TTCTCTAACC TCTCTTCTCC TCAATCCCCC
TCACCACCCT CGTCGTTTTT TTCAGGGGAG GCCATGTTGA TGACGGAGAC
CAGCCGGACC AGGGAGAGCA GGCGGACCCC CATGGCTACC AGGAGGAGAC
CTACGCGGAT CATGAGGATT GGGACAGGTG ACCATCTCAT TTCCCCATCT
ATCTTATTAA TTGATGACAT CTAGGGCTCT GACATTATTA TCTTCCCAAT
CTGAAATACA TGCTCAGATG TGTGTCTATT GTTCATGTTC AAATGTGTGG
CCTGCTTGTT TCTGTCAAAT G
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wmc(8f10)
Plate reference : 8f10
WMC locus number : WMC Length of sequence : 171
Last updated : Tue, Aug 19, 1997 at 5:40 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR185. Trimmed to Rsa1 site at 3' end, and to insert at 5' end. No substantial microsatellite. Bases 1-130 (complement) match 6F5.
PCR Comments :
Length of sequence : 171 Consensus sequence is :
..
GTCGACATCG AGAGAACGTG TTTGTTCGAG AGACACCGAG GAAGACTACT
ATATATCGAT GGTGCATGTA GGCGGGAATT AAACAAAGGG ATGGTCTTAT
TGGTTTTGGG GATATAGGGG AAGAGTGAGA GGCGACTTGA GGTGCTCTCC
GGTGGGTGGA ACAAGTAGTA C
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wmc(8g10)
Plate reference : 8g10
WMC locus number : WMC Length of sequence : 266
Last updated : Wed, Aug 20, 1997 at 1:37 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR186. Trimmed to Rsa 1 sites at 5' and 3' ends. No substantial microsatellite. Matches 3b3 Bases 1 to 266 show homology to 12g7 bases 1 to 266 (266 in longest run, maxScore = 227), 8g10 has precedence.
PCR Comments :
Length of sequence : 266 Consensus sequence is :
..
GTACTTTGTG ATTACAATAA AAGGTGATGA AACTTTCCTA GAAGAATACT
CACTGTAATA TTCTTCAGTA TGTCTTCAGT CTGTACGTTC ACTATGAAGT
GTGAATGTAA TCTCCGATTT TTTTTAGATT TTCTCCGTAC GTTCAGGAGC
AGGAGGTGGT CGAAGGAACG TAGGGTAGTA GCCGATCTTA CCAGGTCGCC
GCCATCGGGG TGATCGAGGT CGCCGTCGTC GTAGCCGCCG CAGATCGCCG
CCGCCACCGC AGGTAC
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wmc114(8h10)
Plate reference : 8h10
WMC locus number : WMC114 Length of sequence : 249
Last updated : Tue, Aug 19, 1997 at 5:44 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR187. Trimmed to Rsa1 at 3' end. (CA)12 52 to 75. Polymorphic bands are weak. No bands of predicted size. RAPD like - redesign primers? Original primers contained corrupted plasmid sequence (AAcgAcggccAgTgAATTccTc at 20 , tm68 forward ) - no room to redesign - use at your peril.
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
AAcgAcggccAgTgAATTccTc at 20 length 22 bases, Tm 68
Reverse primer details :
AgcATcgAcATgcAAcAAcccc at 98 length 22 bases, Tm 70
Expected size of amplified fragment (Chinese Spring=) 100 bases.
Length of sequence : 249 Consensus sequence is :
..
CCCAGTCACG ACGTTGTAAA ACGACGGCCA GTGAATTCCT CGAGGCGCGT
GCACACACAC ACACACACAC ACACACGCAC ACACACACTT ACACTTGGGG
GTTGTTGCAT GTCGATGCTG AACATGCAAC TCATTGGTGG CAGTTGGGTG
TCAATGGGTG GACATGCAAC AGGCCACCAT CGATAGAAGT CGCGTGTCAG
TGTTGGACAT GCAACTCGAG TAGGAGGAAA ATTCCCTCGC GTGCGGTAC
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wmc(8a11)
Plate reference : 8a11
WMC locus number : WMC Length of sequence : 284
Last updated : Tue, Feb 11, 1997 at 6:33 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR188. Trimmed to insert at 3' and to Rsa1 at 5' end. Member of 1G1, 2F8 2D11, 2H11, 2A12, 6G1, 6H3, 6H4, 6B11, 7e3, 7h5, 7b6, 8a11, 5h10, 5d12, 11d4, 9H3 etc.(GT)9 184 to 201,
PCR Comments :
Length of sequence : 284 Consensus sequence is :
..
GTACAGATGA TAAGTTTGCT GACTACTAAA GTAAAGTGGA ATTTGTCCAT
GTTATGCAAG TAAATAAAGG TGATTGTTTA TCATATGGGT AAGGTTGGAT
GAAGGGTGGT AGGAACAAAT GCTCCGCCTA GAGCATGTGT GTGTGAGATG
GAGTCTTAGT GTGTGTGTGA TGTGTGTGTG TATGTGTGTG TGTGTGTGTG
TGAGAGAGAG AGAGATGGAG TCTTAGTGTG TGTGTGTGTG GGGGGGGGGG
TATGCGTGCG TGCGTGTGTG TAAGTGTGCA TGGC
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wmc115(8b11)
Plate reference : 8b11
WMC locus number : WMC115 Length of sequence : 132
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR189. Trimmed to insert. (GT)13 72 to 97. Try 70C anneal.
PCR Comments : 61C anneal, smear; 51C anneal, smear;
Forward primer details :
ggAccccAgTTgcATgTggAcc at 42 length 22 bases, Tm 72
Reverse primer details :
TgcAATTgggggccTcgAgAAA at 97 length 22 bases, Tm 73
Expected size of amplified fragment (Chinese Spring=) 77 bases.
Length of sequence : 132 Consensus sequence is :
..
CAACCATTTA CTTGGGACTA GGGGAGTGTG TGTTTGTCAA GGGACCCCAG
TTGCATGTGG ACCAATGACT CGTGTGTGTG TGTGTGTGTG TGTGTGTTTC
TCGAGGCCCC CAATTGCAAC CCGACCATCG AC
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wmc(8c11)
Plate reference : 8c11
WMC locus number : WMC Length of sequence :
Last updated : Tue, Feb 4, 1997 at 21:56
Owner : Flore, Verneuil Date at Agrogene : Public Domain : Yes
Comments : AGR190. No sequence from Lark 6.1.97
PCR Comments :
No sequence available for this clone
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wmc(8d11)
Plate reference : 8d11
WMC locus number : WMC Length of sequence : 284
Last updated : Tue, Feb 11, 1997 at 6:34 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR191. Trimmed to Rsa1 site at 5' and to insert at 3'. Member of 1G1, 2F8 2D11, 2H11, 2A12, 6G1, 6H3, 6H4, 6B11, 7e3, 7h5, 7b6, 8a11, 5h10, 5d12, 11d4, 9H3 etc.(GT)9 184 to 201.
PCR Comments :
Length of sequence : 284 Consensus sequence is :
..
GTACAGATGA TAAGTTTGCT GACTACTAAA GTAAAGTGGA ATTTGTCCAT
GTTATGCAAG TAAATAAAGG TGATTGTTTA TCATATGGGT AAGGTTGGAT
GAAGGGTGGT AGGAACAAAT GCTCCGCCTA GAGCATGTGT GTGTGAGATG
GAGTCTTAGT GTGTGTGTGA TGTGTGTGTG TATGTGTGTG TGTGTGTGTG
TGAGAGAGAG AGAGATGGAG TCTTAGTGTG TGTGTGTGTG GGGGGGGGGG
TATGCGTGCG TGCGTGTGTG TAAGTGTGCA TGGC
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wmc116(8e11)
Plate reference : 8e11
WMC locus number : WMC116 Length of sequence : 555
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR192. Trimmed to insert at 5' end and to Rsa1 at 3' end. Microsatellite core identical to 7a4, 7f12, 11d10, otherwise OK. (CA)13 184 to 209, (CA)8 212 to 227, (CT)12 160 to 183. ( 2-3 loci - at least 2 polymorphic).
PCR Comments : 61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Forward primer details :
AcggcAccccAgAAccTAgTcg at 71 length 22 bases, Tm 70
Reverse primer details :
gcgTgcgTcTgTgcTgcATcgg at 435 length 22 bases, Tm 77
Expected size of amplified fragment (Chinese Spring=) 386 bases.
Length of sequence : 555 Consensus sequence is :
..
TAGAGCTCAC CGCGCGCCGC AGCCGATGCC TTCATGTCCG CCGTGCGTGC
TGCGGACACC ACTGTGCGCC ACGGCACCCC AGAACCTAGT CGCTCTGATG
CCAATTGTTG AAACCGAATC CTTGCCCTGG ACACGATCTA GGACAAACCT
CGAACAGCCC TCTCTCTCTC TCTCTCTCTC TCTCACACAC ACACACACAC
ACACACACAC CCACACACAC ACACACACCG AAGGTGGAAG ATGGAGCACA
TGATTTTCTC GGTGCACAAA CGCCTGCCTC GGCCGCTCGA ACGGTCTTAT
TTTACTGGGC ACATACCCGG GCTCGGCAAC AAACCGCAGC CTATCCAGAG
GAGCTCTCTC TCCTGCCGAC CGGGCGCACA CCATGGCCCC GGTGGAGACT
ACGTCCACTC TGGTTCTCCT TGGCTCGGCT CATTCCGATG CAGCACAGAC
GCACGCACCC GCCGGTCGCC ACCGTGGAAC GTGGCTCATT CCAACATCTG
GGCTATTCAA TCATAGAAAT AAACAGTCCA GAATGGTCTA ATATACCATT
CGTAC
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wmc(8f11)
Plate reference : 8f11
WMC locus number : WMC Length of sequence : 251
Last updated : Tue, Feb 4, 1997 at 21:56
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR193. Trimmed to insert at 5' and asnd to Rsa1 at 3' end. No substantial microsatellite.
PCR Comments :
Length of sequence : 251 Consensus sequence is :
..
GCGCCGGGAG AAGGGGGCGC GTCAACCCGC CATCGCCGTC CCTGCGTAGC
CGCCGCCGCC TGCCGCCATC GCCGTCGTCC TGTGTGGTGG AACCTTGCTT
GATGATAATG TGCCACGAGG TGAATTTCTT GATGAACAAA TTGCTAGAGC
TAAAGTTATT GAGAATGTTG AAACTGATGA AATCATTGAA ACTGAAAATC
TTGAGACACC TATTAGACCT AGTCCTTCTT GATATGAATT GCCTAAGGTA
C
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wmc117(8g11)
Plate reference : 8g11
WMC locus number : WMC117 Length of sequence : 703
Last updated : Wed, Aug 20, 1997 at 10:56 am
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR194 No overlap between forward and reverse sequences (weak homology in region of break). Trimmed to insert at 3' end. (GA)12 186 to 209, (GA)9 311 to 328, (GT)9 160 to 177, (GT)9 281 to 298, (GT)16 364 to 395, (GT)8 398 to 413. Bases 430-end match 2e11 (ie 3'side of mcrosatellite). Reverse sequence matches 11D5.
PCR Comments : tested 61C anneal, no product; 51C anneal, product; 51C anneal, polymorphic on acrylamide.;
Forward primer details :
ATgcTccTccTAgAgcATgTgT at 101 length 22 bases, Tm 62
Reverse primer details :
TcgAgATgTcgATTcgTTTTcc at 480 length 22 bases, Tm 65
Expected size of amplified fragment (Chinese Spring=) 401? bases.
Length of sequence : 703 Consensus sequence is :
..
GCTGACTACT AAAGTAAAGT GGAATTTGTC CATGTTATGC AAGTAAATAA
AGGTGATTGT TATCATACGG GTAAGGTTGG ATGAAGGGTG GTAGGAACAA
ATGCTCCTCC TAGAGCATGT GTGTGCGAGA TGGAGTCTTA CTGTGTGTGT
GGGGTCTTTG TGTGTGTGTG TGTGTGTGAG AGACAGAGAG AGAGAGAGAG
AGAGAGAGAG GAGAGAGAGA GATGGAGTCT TNGTTTGTGT GTGTGTGTGA
GAGAGAGAGA GATGGA
(break)
TGCGTGC GTGTGTGTGT GTGTGTGTTT
GTGTGTGTGT GAGAGAGAGA GAGAGAGATG GAGTCTTAGT GTGTGTGGGG
GGTGCGTGCG TGCGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTTTGTG
TGTGTGTGTG TGTGGGTGTG TGTGTGTCGC GGGGTCCTCG GTGGCGGATG
TAATTTAAGT GTGCATGGCT TCATCATTTG GGGCGGAAAA CGAATCGACA
TCTCGATGTG ATACAGCCCT TTCCATTTTC GTTGGGAAAG AACGGCGAAG
TCCGTCCGAA CCCTCCAATG AAGAAATAAG AGGAGAGCAA AGCGCCAATG
GCGCGCGAAG CGCATGCGGA AGGGGCACGG AGAAATAAAG AAGTGTGGGG
GAGAAGCAGC CGAGCTCATT CCCTTCGCTT CCTGGGCCCA AAGCAGTGCT
TTGTTTCCTG GCCAAAT
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wmc118(8h11)
Plate reference : 8h11
WMC locus number : WMC118 Length of sequence : 296
Last updated : Mar 22 DŽc 1998 at 9:42
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR195. Double insert joined by linkers at 188-205. Small interrupted microsatellite (GT)2(GA)7 in first insert. Trimmed off Puc sequence at 3' 20.8.97 Bases 116 to 187 show homology to 20e10 bases 123 to 194 (72 in longest run, maxScore = 63).
PCR Comments : 61C anneal, product;
Forward primer details :
AgAATTAgcccTTgAgTTggTc at 36 length 22 bases, Tm 60
Reverse primer details :
cTcccATcgcTAAAgATggTAT at 158 length 22 bases, Tm 61
Expected size of amplified fragment (Chinese Spring=) 144 bases.
Length of sequence : 296 Consensus sequence is :
..
TGCTCATCAA GTTTTTTTAT AAATAAATGC CAACAAGAAT TAGCCCTTGA
GTTGGTCTCA TTTTTTTGTG TGAGAGAGAG AGAGAGTGAA GCTAGCAGCC
AAGCATGTGA AGATCCCAGT GATGATGGGA AGAGGAAACT ACCGGGAAGG
AGCGCGCATA CCATCTTTAG CGATGGGAGG GATGTGTTAG TCCACGCGTG
GACTAACAAC TTCAGAAAGG AATCACATGC ATACAAATTA TGTGAAGATT
CACTATCGAT TAGAACAGTA ACCTAGACTG TGTAATTTCT ATCAAC
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wmc119(8a12)
Plate reference : 8a12
WMC locus number : WMC119 Length of sequence : 312
Last updated : Lun 8 FŽv 1999 at 10:07
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR196. Trimmed to insert at 3' end and to Rsa1 at 5' end. Duplicate 8b12, close relative 1c4. Homologous to reverse of first 71 bases of 11c7 (CA)17 47 to 80. Bases 123 to 162 show homology to 10b10 bases 1 to 40 (complement) (40 in longest run, maxScore = 48). Bases 187 to 225 show homology to 22a6 bases 69 to 107 (complement) (39 in longest run, maxScore = 78).
PCR Comments : 61C anneal, product;
Forward primer details :
TgTgTgTTgTgAgAcgggATTg at 6 length 22 bases, Tm 66
Reverse primer details :
gccAccTATgTAggTggATgTT at 113 length 22 bases, Tm 62
Expected size of amplified fragment (Chinese Spring=) 129 bases.
Length of sequence : 312 Consensus sequence is :
..
GTACGTGTGT GTTGTGAGAC GGGATTGCAT ACAGAACAAC AACATACACA
CACACACACA CACACACACA CACACACACA CTTATAAGAA CATGGTTGCA
TAAACCAAAT TAAACATCCA CCTACATAGG TGGCTACTAC AACCATGGCA
TTTGCACACA CCAAAGTTAA AATATTACAT GCATAATTAC ATAGGTGGCT
ACTACACACA TGACATTTCC ACACATCAAT AAAGTAAACT ATATATTACA
TGCATGATTA ACTAGTATAA ACGATCATCT GATCATCATC TACTTCTTGT
GGCGCTGGCT CT
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wmc(8b12)
Plate reference : 8b12
WMC locus number : WMC Length of sequence : 312
Last updated : Tue, Feb 11, 1997 at 6:40 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR197. Trimmed to insert at 3' end and to Rsa1 at 5' end. Duplicate 8a12, some homology to 11c7. (CA)17 47 to 80.
PCR Comments :
Length of sequence : 312 Consensus sequence is :
..
GTACGTGTGT GTTGTGAGAC GGGATTGCAT ACAGAACAAC AACATACACA
CACACACACA CACACACACA CACACACACA CTTATAAGAA CATGGTTGCA
TAAACCAAAT TAAACATCCA CCTACATAGG TGGCTACTAC AACCATGGCA
TTTGCACACA CCAAAGTTAA AATATTACAT GCATAATTAC ATAGGTGGCT
ACTACACACA TGACATTTCC ACACATCAAT AAAGTAAACT ATATATTACA
TGCATGATTA ACTAGTATAA ACGATCATCT GATCATCATC TACTTCTTGT
GGCGCTGGCT CT
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wmc(8c12)
Plate reference : 8c12
WMC locus number : WMC Length of sequence : 582
Last updated : Wed, Aug 20, 1997 at 9:44 am
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR198. Multiple inserts (2) joined at 314 to 331 by linkers. Trimmed to Rsa1 at 5' end and to insert at 3' end. Matches 8d12. .(CA)8 379 to 394, (GA)14 228 to 255, (GT)8 130 to 145. First insert has repeated structure. Cannot make primers to first insert, primers for second insert are shown on 8d12. First insert first 53 bases match part of 5C7. Bases 20-100 have homology to part of 7G9.
Bases 285 to 305 show homology to 12e2 bases 38 to 58 (complement) (21 in longest run, maxScore = 78). Bases 129 to 158 show homology to 19g6 bases 63 to 92 (complement) (30 in longest run, maxScore = 66). Bases 129-228 (ie 5' side of microsatellite show homology to part of 8e1.
PCR Comments :
Length of sequence : 582 Consensus sequence is :
..
GATCAAGATC GAGTTGTCAC CCTTCTGCTT TCATTGTTGG GGGAAGGGGG
AGGGGGAGAA ACACGTATCG AGAGTGTGCG CGCGGTAGGC ACAGAGGCAC
ACCTAGCGGG TGTGTGTGTC TGTGTGTTTG TGTGTGTGTG TGTGTTTGAG
AGAGAAGCGA GTTGATAGAT TACTATCAAG ATCGAGGTGC CACCCTAATC
CTTCGGTGTC GGGTAGTGTG TGTGTGTGAG AGAGAGAGAG AGAGAGAGAG
AGAGAAGCCA GTAGATAGAT TAGTATCAAG ATCAAGGTGT CACCCTACTC
CTTCGATGTT GGGTAGTCCA CGCGTGGACT AACAACTGGG GAAGGAGATG
AGAAGGGGGT CAGGATTACA GGGAGATACA CACACACACA CACACGCACG
CACACACAAA CACGCGCGCG CCGCCGCCGC CGCCTGATCC TAGTCGGGAT
GCCCGCTCTC TACCTGCTAC CTGCCTTATA TCCTTCTGCA ACCTGGTCTC
CTGGGCTAAA CATGTAGGAG ATCCATTAGG GTCCAGTAAA CTTGTGGCAA
GGCCTCCCCT CCCTTCTGGG CCGGCTTGGT AC
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wmc120(8d12)
Plate reference : 8d12
WMC locus number : WMC120 Length of sequence : 582
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
PIC Value : 0.46
Comments : AGR199. Matches 8c12. Multiple inserts (2) joined at 314 to 331 by linkers. Trimmed to insert at 5' end and Rsa1 at 3' end. (CA)8 379 to 394, (GA)14 228 to 255, (GT)8 130 to 145. Primers designed to second insert. (2 loci - both polymorphic?)
PCR Comments : 61C anneal, product; 61C anneal, polymorphic on acrylamide;
Forward primer details :
ggAgATgAgAAgggggTcAggA at 344 length 22 bases, Tm 68
Reverse primer details :
ccAggAgAccAggTTgcAgAAg at 483 length 22 bases, Tm 67
Length of sequence : 582 Consensus sequence is :
..
GATCAAGATC GAGTTGTCAC CCTTCTGCTT TCATTGTTGG GGGAAGGGGG
AGGGGGAGAA ACACGTATCG AGAGTGTGCG CGCGGTAGGC ACAGAGGCAC
ACCTAGCGGG TGTGTGTGTC TGTGTGTTTG TGTGTGTGTG TGTGTTTGAG
AGAGAAGCGA GTTGATAGAT TACTATCAAG ATCGAGGTGC CACCCTAATC
CTTCGGTGTC GGGTAGTGTG TGTGTGTGAG AGAGAGAGAG AGAGAGAGAG
AGAGAAGCCA GTAGATAGAT TAGTATCAAG ATCAAGGTGT CACCCTACTC
CTTCGATGTT GGGTAGTCCA CGCGTGGACT AACAACTGGG GAAGGAGATG
AGAAGGGGGT CAGGATTACA GGGAGATACA CACACACACA CACACGCACG
CACACACAAA CACGCGCGCG CCGCCGCCGC CGCCTGATCC TAGTCGGGAT
GCCCGCTCTC TACCTGCTAC CTGCCTTATA TCCTTCTGCA ACCTGGTCTC
CTGGGCTAAA CATGTAGGAG ATCCATTAGG GTCCAGTAAA CTTGTGGCAA
GGCCTCCCCT CCCTTCTGGG CCGGCTTGGT AC
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wmc121(8e12)
Plate reference : 8e12
WMC locus number : WMC121 Length of sequence : 393
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR200. Trimmed to insert at 5' end and to Rsa1 site at 3' end. (GA)12 207 to 230. Maybe polymorphic.
PCR Comments : 61C anneal, product;
Forward primer details :
ggcTgTggTcTcccgATcATTc at 26 length 22 bases, Tm 69
Reverse primer details :
AcTggAcTTgAggAggcTggcA at 312 length 22 bases, Tm 69
Expected size of amplified fragment (Chinese Spring=) 308 bases.
Length of sequence : 393 Consensus sequence is :
..
ATACATCAAG CAGCACGAAT CTTAAGGCTG TGGTCTCCCG ATCATTCTGG
AGGACTCGAG ACCCCAACAG GTCTCTCCAG AACCTTCTAA ACCAAAGAGG
TTCAGCATCC CCTCCCCCAA GTAAGCTTTC CCGCTCCTCT TTTACAAAAA
CCCCCTCCAT TTCCCACGCC TCTCGCTCAG CCACAAGAAT CCAAATCATC
ACCGCAGAGA GAGAGAGAGA GAGAGAGAGA AAGAGAGGGA AAGAAGAGAG
AGAGAAGAGG GAGAGAGACC ATGGCCTCCG CCGTCGTTTG CAAGGGCGAG
GATTCCGCGC CTGCCAGCCT CCTCAAGTCC AGTGCTCCCG TGGCCTTCTG
CCCGCTCCGC TCCCCCGCCG TCACCGCCGG CCGCCGCCCG TAC
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wmc(8f12)
Plate reference : 8f12
WMC locus number : WMC Length of sequence :
Last updated : Tue, Feb 4, 1997 at 21:56
Owner : Flore, Verneuil Date at Agrogene : Public Domain : Yes
Comments : AGR201. No sequence returned from Lark 6.1.97.
PCR Comments :
No sequence available for this clone
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wmc(8g12)
Plate reference : 8g12
WMC locus number : WMC Length of sequence : 324
Last updated : Lun 28 DŽc 1998 at 16:28
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR202. Trimmed to Rsa1 sites at both ends. (CA)27 241 to 294. Too difficult to design primers. Bases 86 to 279 show homology to 10a11 bases 73 to 266 (194 in longest run, maxScore = 168), duplicate, 8g12 has precedence. Bases 50 to 281 show homology to 10e6 bases 60 to 291 (232 in longest run, maxScore = 171). Duplicate with 10e6, 8g12 has priority. Bases 164 to 263 show homology to 20h4 bases 1 to 100 (100 in longest run, maxScore = 66). Duplicate with 20h4, 8g12 has priority.
PCR Comments :
Length of sequence : 324 Consensus sequence is :
..
GTACGATGAT TGAGCCTAAT AAATCATGTT ACCTTTCCAA TACAGTCAGG
GGACCATGCA TCTTATGCCT TCAACAGCTA CTGGCAAAAA TACAAGAAAC
ATGGTGGTTC TTGCTACTTC AATGCAGCTG CAATGGTCAC CGACCTAAAC
CCAAGTATGT TCACAACCTA AACCATCATT AGGAGCATAC ACTTTTGCAG
GTTGAAATTC CACTAGAAAG ATCAAACATG CAGAGCACAA CACACACACA
CACACACACA CACACACACA CACACACACA CACACACACA CACACGCCAC
AAGCCCGCAC ACACGCACGT GTAC
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wmc122(8h12)
Plate reference : 8h12
WMC locus number : WMC122 Length of sequence : 287
Last updated : Fri, Jun 20, 1997 at 4:28 pm
Owner : Flore, Verneuil Date at Agrogene : 6.1.97 Public Domain : Yes
Comments : AGR203. Trimmed to Rsa1 sites at both ends. (CA)22 87 to 130, (CA)12 151 to 174.
PCR Comments : 51C anneal, product;
Forward primer details :
cAgAATTTcTcgTAgAAccA at 22 length 20 bases, Tm 55
Reverse primer details :
ggcATTgTTgTTAAAgcAcT at 209 length 20 bases, Tm 57
Expected size of amplified fragment (Chinese Spring=) 207 bases.
Length of sequence : 287 Consensus sequence is :
..
GTACATGTTA TGCATATATA ACAGAATTTC TCGTAGAACC AATTATATGT
TATGCATATA TAATAGAATT TCTTGTATGA CACACTCACA CACACACACA
CACACACACA CACACACACA CACACACACA CGCACGCACG CACGCACACG
CACACACACA CACACACACA CACATCACAG TTGTTGTCAG AACCCGGACT
ATGGGAAAAG TGCTTTAACA ACAATGCCTC CAGGAGGGAA ACGTTGTTGC
GGGTTTCGAC ATCGCTACAA CCACCCACCA AGGGTAC
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wmc(7A7)
Plate reference : 7A7
WMC locus number : WMC Length of sequence :
Last updated : Tue, Feb 4, 1997 at 21:56
Owner : Blake, Montana Date at Agrogene : 15.1.97 Public Domain : Yes
Comments : No sequence 15.1.97
PCR Comments :
No sequence available for this clone
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wmc123(7b7)
Plate reference : 7b7
WMC locus number : WMC123 Length of sequence : 459
Last updated : Tue, Feb 16, 1999 at 1:35 pm
Owner : Blake, Montana Date at Agrogene : 15.1.97 Public Domain : Yes
Comments : 7B7 Microsatellite : [ AC ]17 Tom Primer1 : GGGTA GGTCG ATGTG TCGCT (60%) Tom Primer 2 : TGGAT GGTAA CATGC ATGTC (45%) EXPECTED PCR PRODUCT : 138 nts.(CA)16 56 to 87. Duplicate 7b10. Bases 1-88 (ie 5' side of microsatellite) match part of 6c6 forward primer incoorporates 3 mismatches between sequences.
PCR Comments : 61C anneal, stuttery product.
Forward primer details :
TgTAggggTAggTcgATgTgTc at 5 length 22 bases, Tm 63
Reverse primer details :
ggATggTAAcATgcATgTcTTc at 123 length 22 bases, Tm 61
Expected size of amplified fragment (Chinese Spring=) 140 bases.
Length of sequence : 459 Consensus sequence is :
..
TCTGTGTAGG GGTAGGTCGA TGTGTCGCTC TCTCTAACGC ACACATGCTG
TTAAACACAC ACACACACAC ACACACACAC ACACACACGC CGAGGTAAAA
TGAGTCTATA TCTCAATTAA TGGAAGACAT GCATGTTACC ATCCATATGT
TACTACCTAC TATGAAGTAG TAACACAGCT AGTAACATAT GCATGTTACC
ATCCATATGG TTACTACCTA CTATGAAGTA GTAACACAGA CTAGTAACAT
ATGCATGTTA CTAGTCAAGT TACTCACCAC TATGACCAGC CTAGCAATGT
AACCGGGCGC TCCTAGTCAC GCGTACGTGG GTGGACCATG GACGAGCGCA
TGGGGCCCAC AACAACATGT GGCGCATGTG TGTGTCCGAC ATGTAGCTCA
ATAGGGTCAG ACGGATAAGG GTATCTCCAA TGTTGTCCAC TAAATTGGAC
CCACTATCT
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wmc(7c7)
Plate reference : 7c7
WMC locus number : WMC Length of sequence : 229
Last updated : Tue, Feb 11, 1997 at 6:48 pm
Owner : Blake, Montana Date at Agrogene : 15.1.97 Public Domain : Yes
Comments : 7C7 Microsatellite : [CA]21 CC [GA]10 Tom Primer 1 : GGCTC TCTTT AATTC TTGCT (40%) Tom Primer 2 : AAGGT GAAAA TATTC CAATC (30%) EXPECTED PCR PRODUCT : 109 nts. (CA)21 23 to 64, (GA)10 67 to 86. Virtually identical to 9H4.
PCR Comments :
Length of sequence : 229 Consensus sequence is :
..
GGCTCTCTTT AATTCTTGCT TTCACACACA CACACACACA CACACACACA
CACACACACA CACACCGAGA GAGAGAGAGA GAGAGATATG ATTGGAATAT
TTTCACCTTG GCATCGCTTT TGCTTGAGAT CTAAAAATAA CTTACAGGTG
GATTACGATA GACCTCTATA AGGGGCAAAA GACTCTTTCC TCATCTCTAC
ATCCCTTCTA CACTGTTACT TCAAAACAA
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wmc(7d7)
Plate reference : 7d7
WMC locus number : WMC Length of sequence : 289
Last updated : Lun 9 Nov 1998 at 14:19
Owner : Blake, Montana Date at Agrogene : 15.1.97 Public Domain : Yes
Comments : [AGC]3[GAC]4[GACAAC]3[AAC]12[GACAAC]6[AAC]24[GACCAC]7[AAC]7[AACCAC]5. Core matches 7e2, flanking sequence different. (CAA)13 40 to 78, (CAA)25 112 to 186, (CAA)8 229 to 252. No room for primers. Bases 126 to 175 show homology to 10f6 bases 148 to 197 (50 in longest run, maxScore = 30), duplicate, 7d7 has priority.
PCR Comments :
Length of sequence : 289 Consensus sequence is :
..
GGACAGCAGC AGCGACGACG ACGACGACAA CGACAACGAC AACAACAACA
ACAACAACAA CAACAACAAC AACAACAACG ACAACGACAA CGACAACGAC
AACGACAACG ACAACAACAA CAACAACAAC AACAACAACA ACAACAACAA
CAACAACAAC AACAACAACA ACAACAACAA CAACAACGAC CACGACCACG
ACCACGACCA CGACCACGAC CACGACCACA ACAACAACAA CAACAACAAC
AACCACAACC ACAACCACAA CCACAACCAC AACAAAACG
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wmc(7e7)
Plate reference : 7e7
WMC locus number : WMC Length of sequence :
Last updated : Tue, Feb 4, 1997 at 21:56
Owner : Blake, Montana Date at Agrogene : 15.1.97 Public Domain : Yes
Comments : No sequence 15.1.97
PCR Comments :
No sequence available for this clone
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wmc(7f7)
Plate reference : 7f7
WMC locus number : WMC Length of sequence :
Last updated : Tue, Feb 4, 1997 at 21:56
Owner : Blake, Montana Date at Agrogene : 15.1.97 Public Domain : Yes
Comments : No substantial microsatellite.
PCR Comments :
Expected size of amplified fragment (Chinese Spring=) 141 bases.
Length of sequence : Consensus sequence is :
..
GAAAATATGT CTTGATAGCT ACCAAGATCT CAAGCCATGA AACGTAATGA
CTGTGCTCTT GCTTACGCGC CTTCGAGGGA TCCTTCTTAG AGCTGACCTG
CAGGCATGCA AGCTTGGCGT ACACTTCAAT GGTCAATAGC T
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wmc124(7g7)
Plate reference : 7g7
WMC locus number : WMC124 Length of sequence : 224
Last updated : Tue, Feb 16, 1999 at 1:35 pm
Owner : Blake, Montana Date at Agrogene : 15.1.97 Public Domain : Yes
Comments : 7G7 Microsatellite : [TG]14. Tom PRIMER 1 : GCGGT CGACT GGATT ATGAG (55%). Tom PRIMER 2 : CGAAC TCTAT ATAAG CCACC (45%) EXPECTED PCR PRODUCT: 105 nts. (GT)14 65 to 92. Bases 64-185 (complement) ie 3' side of microsatellite match part of 2a10.
PCR Comments : 61C anneal, smear.
Forward primer details :
cggAggcggTcgAcTggATT at 37 length 20 bases, Tm 71
Reverse primer details :
gTgcccAgcAgggAcgAggA at 186 length 20 bases, Tm 72
Expected size of amplified fragment (Chinese Spring=) 169 bases.
Length of sequence : 224 Consensus sequence is :
..
CTCTCGGAGG AGGTAAAAGC CCTACGTCTC GGTGTGCGGA GGCGGTCGAC
TGGATTATGA GTATGTGTGT GTGTGTGTGT GTGTGTGTGT GTTACAGAGG
GTGCGAACCC CTGTCCCAGA GGAGGGGGTG GCTTATATAG AGTTCGCCTG
GACCCCAGCC ATCTCCTGTT ACAGAGGGTT GAATGTCCTC GTCCCTGCTG
GGCACCGCGG TGGACGAATA AGGG
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wmc(7h7)
Plate reference : 7h7
WMC locus number : WMC Length of sequence : 459
Last updated : Lun 9 oct 2000 at 14:43
Owner : Blake, Montana Date at Agrogene : 15.1.97 Public Domain : Yes
Comments : No room for primers. 7H7 TA [CAA]6 [CA]2 CGC [CAA]18 CA [CAG]3 [CAA]5
[CAG]3 [CAACAG]5 [CAA]2 T [CAACAG]3 G [CAA]2[CAACAG]6 [CAA]2 [CAACAG]4 [CAATCAAG]2 CACCA G[CAACAG]4 [CAA]2 [CAACAG]5 [CAA]2 [CAATAAG]2
CAACA CA [CAG]3 [CAA]2 [CAG]5 [CAA]2 CTAGA [CA]3 CTAG [CA]2 [CAATCAAG]2 [CAACAG]5(CAA)6 3 to 20, (CAA)18 28 to 81, relative of 5c12 Bases 198 to 218 show homology to 21e5 bases 318 to 338 (complement) (21 in longest run, maxScore = 34). Bases 308 to 335 show homology to 22e1 bases 134 to 161 (complement) (28 in longest run, maxScore = 34). Bases 291 to 313 show homology to TW2c03.3 bases 74 to 96 (23 in longest run, maxScore = 29).
PCR Comments :
Length of sequence : 459 Consensus sequence is :
..
TACAACAACA ACAACAACAA CACACGCCAA CAACAACAAC AACAACAACA
ACAACAACAA CAACAACAAC AACAACAACA ACACAGCAGC AGCAACAACA
ACAACAACAG CAGCAGCAAC AGCAACAGCA ACAGCAACAG CAACAGCAAC
AATCAACAGC AACAGCAACA GGCAACAACA ACAGCAACAG CAACAGCAAC
AGCAACAGCA ACAGCAACAA CAACAGCAAC AGCAACAGCA ACAGCAATCA
AGCAATCAAG CACCAGCAAC AGCAACAGCA ACAGCAACAG CAACAACAAC
AGCAACAGCA ACAGCAACAG CAACAGCAAC AACAATAAGC AATAAGCAAC
ACACAGCAGC AGCAACAACA GCAGCAGCAG CAGCAACAAC TAGACACACA
CTAGCACACA ATCAAGCAAT CAAGCAACAG CAACAGCAAC AGCAACAGCA
ACAGCTAGTC AGC
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wmc(7a8)
Plate reference : 7a8
WMC locus number : WMC Length of sequence :
Last updated : Tue, Feb 4, 1997 at 21:56
Owner : Blake, Montana Date at Agrogene : 15.1.97 Public Domain : Yes
Comments : No sequence 15.1.97
PCR Comments :
No sequence available for this clone
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wmc(7b8)
Plate reference : 7b8
WMC locus number : WMC Length of sequence : 303
Last updated : Tue, Feb 4, 1997 at 21:56
Owner : Blake, Montana Date at Agrogene : 15.1.97 Public Domain : Yes
Comments : 7B8. Microsatellite : [GC]3 GTCTC TTG [GC]5 TACTC GTA [GC]5 Tom PrIMER 1 : TTCTT CGCCT ACTTC GAGCA (50%) Tom PrIMER 2 : GGTCG GGGTA GATGA CGGCG (75%). EXPECTED PCR PRODUCT: 147 nts. No substantial microsatellite. Bases 287 to 303 show homology to 12f2 bases 21 to 37 (complement) (17 in longest run, maxScore = 63).
PCR Comments :
Length of sequence : 303 Consensus sequence is :
..
GGGAACCGCG CCCTTGTCCT AGGTCGCCGG TCTTCGTCAC GCTGTCAGGG
TTCTTCGCCT ACTTCGAGCA CCGCCGCCGC ACTCTACTAG CGCGCGTCTC
TTGGCGCGCG CGCTACTCGT AGCGCGCGCG CCGTCCATCC CTTCGTCTTC
GTCCAGCACC AGCTCGTCTC CAGCGTCGCC GTCATCTACC CCGACCGCTT
CATCTACTCC GACAACGCGG GCGATATTGG CCCCCGGCCG ATGGACGCCG
CAATCGTCGG TCGAGTTCTT CTCTGCCGGC CCCTCCGACT TCTCCGACAT
GGC
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wmc(7c8)
Plate reference : 7c8
WMC locus number : WMC Length of sequence :
Last updated : Tue, Feb 11, 1997 at 6:51 pm
Owner : Blake, Montana Date at Agrogene : 15.1.97 Public Domain : Yes
Comments : No room for primers.(GT)8 22 to 37, (GT)9 57 to 74, (GT)10 77 to 96,
PCR Comments :
Length of sequence : Consensus sequence is :
..
ATTTATAGCA AACAAACTAA TGTGTGTGTG TGTGTGTGNN NNN
(break)
NNNNNTGTGT GTGTGTGTGT GTGTATGTGT GTGTGTGTGT GTGTGTG
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wmc(7d8)
Plate reference : 7d8
WMC locus number : WMC Length of sequence : 354
Last updated : Tue, Feb 4, 1997 at 21:56
Owner : Blake, Montana Date at Agrogene : 15.1.97 Public Domain : Yes
Comments : No substantial microsatellite.
PCR Comments :
Length of sequence : 354 Consensus sequence is :
..
CCGGTAACCC GGAGTGACGT CATCCGCCAT TAATACACGT CCCGTCTAAC
GTATCTCAAC GGATCCTTAT CTTAATAACT GTCCTAAAAA TCGAGGCGCC
TCTGCAGCTG GATAATCATG TCTTCAGCCT CCTCGTTTCT CGCGCCCACT
CATCAGTCGT CCTTATAATA GCCGACTGGT CCTGTCTCAT TCTCCCCTTC
CATCGTCTTC CTCCTCTCGA CCTCTCAGAA CTCGAGCTCC GCCGCGCCGC
CGCGCACCTC ATCTCGATCG ACCAAGGCCG CTGCATCCCT GCCTTGACCA
GAGAATCGGG CGCACCTCCG CTTCCCATCA ACACCAGTAA GTCCTTGCCG
TCTC
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wmc(7e8)
Plate reference : 7e8
WMC locus number : WMC Length of sequence : 285
Last updated : Tue, Feb 4, 1997 at 21:56
Owner : Blake, Montana Date at Agrogene : 15.1.97 Public Domain : Yes
Comments : No substantial microsatellite.
PCR Comments :
Length of sequence : 285 Consensus sequence is :
..
GGGCCGACTC AGTCGTGGGC CTCCGCTCTG CATCTTCCTT ACGGACTATA
TAAGAAGGCT CTGGCAGTGA AGTAACCTAG TTCGGTTCAC TCGGTTTTTG
GGGAGCGTCT CGAGTGCTCC CGATCCGTCC CAACTCCGTC CGCCTCTGCT
TCCACTACTT TTCCCCTGCA TCGACACCAT GCGCCGCGCC GCCGCTAAGA
AGGCCATGGA CGACGCTGAG GCTGCTGCCA CCGTCGCCGC GGGCCGGCCA
ACCGGAGGGT ATGATCTGTT CATCCCTGTT TACTC
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