From Dave Matthews, 4/10/95
How to Create 2_Point_Data Records for GrainGenes
A 2_Point_Data record is a GrainGenes object describing the genetic
distance between two loci. Usually the distance is not part of a complete
map, but was measured individually because it was of special interest, e.g.
because one or both of the loci are genes.
EXAMPLE
2_Point_Data : "Lr9/OPJ13"
Locus_1 "Lr9"
Locus_2 "OPJ13"
Distance 0
Female_parent "Arina (P11)"
Male_parent "Oberkulmer"
Number_of_individuals 156
Reference "TAG-88-110"
Contact "Keller, Beat"
Data_source "Penner, Greg" 94.11.16
Associated with any 2_Point_Data record would be additional information in
regular Locus records like:
Locus "Lr9"
Type "Gene"
Associated_gene "Lr9 (Triticum)"
Chromosome "6B"
Chromosome_arm "6BL"
, as well as Germplasm records for the parents, the Reference record, and
Colleague records.
FIELDS AVAILABLE
Note that some fields are alternative options; no record would contain
values for all of these fields.
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Field name Sample Entry Description or List of Choices
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2_point_data Lr9/OPJ13 Names of the two loci, gene first
Locus_1 Lr9 Name of first locus
Locus_2 OPJ13 Name of second locus
Distance 0 Distance between loci
Error 10 Uncertainty in distance estimate
Distance_units "% recombination" Units for distance value [Any text]
Linkage "Real close" Textual qualitative evaluation, if
no numeric value given in Distance
QTL --- If field "QTL" is present, one of
the Loci is a QTL.
Female_parent "Ace CItr13384" ID of Germplasm record corresponding
to female parent. Include accession
number if possible.
Male_parent "Baca CItr15891" Male parent
Parent "Baca CItr15891" If cross was reciprocal or unknown
Generation "F2" Kind of mapping population
Number_of_individuals 156 Size of progeny population scored
Method ? (Would this be a useful field?)
Contact "Keller, Beat" Name of Colleague who did the work,
and/or the Principal Investigator
Reference "TAG-88-110" ID of literature Reference record
Remark "Hot marker!" [Any text]
Data_source "Penner, Greg" 94.11.16 Colleague and date submitted
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