Estimated positions for morphological marker loci in barley chromosomes
from Jerry Franckowiak and Udda Lundqvist
last update 15 September 1997
Reference:
Franckowiak, J. 1997. Revised linkage maps for morphological markers in
barley, Hordeum vulgare. Barley Genetics Newletter 26: 9-21.
Positions are estimated based on linkage information present in the Barley
Genetic Stocks descriptions for barley genes.
These maps are designed to provide estimates of gene positions so that
potential users have some information with which to develop experiments.
Thus changes will occur frequently as more information accumulates. The
maps developed by Jens Jensen are much more precise in terms of placing
loci in the chromosomes and should be given priority when conflicts in
marker positions arise.
Position Locus symbol Full name
--------- ------------ ---------------------------------------
Chromosome 1H:
84 Rph4 (Pa4) Reaction to Puccinia hordei 4
81 Cer-yy (Gle1) Eceriferum-yy (Glossy spike 1)
77 Hor2 B-hordeins
70 Mla (Reg1) Reaction to Erysiphe graminis hordei 1
62 Mlk (Reg4) Reaction to Erysiphe graminis hordei 4
53 Lys4 High lysine 4
msg31 Male sterile genetic 31 (dwarf)
sls Small lateral spikelet
msg4 Male sterile genetic 4
fch3 (f3) Chlorina seedling 3
23 fst2 (fs2) Fragile stem 2
clh Curled leaf dwarf
vrs3 (int-a) Six-rowed spike 3 (Intermedium spike-a)
20 cer-zi Eceriferum-zi + + ++
19 cer-e Eceriferum-e - + ++
18 ert-b Erectoides-b
12 msg1 Male sterile genetic 1
xnt7 (xan,,g) Xantha seedling 7 (Xantha seedling g)
0 nec1 Necrotic leaf spot 1
-15 abo1 (at) Albino seedling 1 (Albino seedling t)
-35 wst5 White streak 5
-42 cud2 Curly dwarf 2
rvl Revoluted leaf
-57 Blp (B) Black lemma and pericarp
-75 fch7 (f7) Chlorina seedling 7
-80 trd Third outer glume
-91 eam8 (eak) Early maturity 8
Chromosome 2H:
85 gsh6 (gs6,cer-c) Glossy sheath 6 (Eceriferum-c) - - ++
gsh1 (gs1,cer-q) Glossy sheath 1 (Eceriferum-q) - - ++
gsh8 (gs8,cer-u) Glossy sheath 8 (Eceriferum-u) + + ++
46 Eam1 (Ea) Early maturity 1
33 sbk (sk,cal-d) Subjacent hood (Calcaroides-d)
sld2 Slender dwarf 2
29 rtt (rt) Rattail spike
flo-c Extra floret-c
23 fch15 (or) Chlorina seedling 15 (Orange seedling)
21 com2 (bir2) Compositum 2 (Branching inflorescent rachilla 2)
19 msg9 Male sterile genetic 9
18 abo2 (a2) Albino seedling 2
9 msg33 Male sterile genetic 33
6 msg3 Male sterile genetic 3 (dwarf)
5 fch1 (f1) Chlorina seedling 1
4 yvs1 (yx,alb-c) Virescent seedling 1 (Albina seedling-c)
3 gsh5 (gs5,cer-s) Glossy sheath 5 (Eceriferum-s) + - ++
2 msg2 Male sterile genetic 2
0 eog (e) series Elongated outer glume
abr Accordion basal rachis internode
-8 cer-n (gs9) Eceriferum-n (Glossy sheath 9) - + ++
-10 Gth (G) Toothed lemma
hcm (h) Short culm
-17 wst4 White streak 4
vrs1 (Int-d) Six-rowed spike 1 (Intermedium spike-d)
-30 vrs1 (v) series Six-rowed spike 1
vrs1 (lr) Six-rowed spike 1 (Reduced lat. spikelet append.)
-40 cer-g Eceriferum-g + + ++
-44 Lks1 (Lk) Awnless
-46 mtt4 (mt,,e) Mottled leaf 4 (Mottled leaf e)
-48 Pre2 (Re2) Red lemma and pericarp 2
msg27 Male sterile genetic 27
-59 ant2 (Pr) Anthocyanin-less 2 (Purple straw)
-61 fol-a Angustifolium-a
-66 Pau Purple auricle
-72 Pvc (Pc) Purple veined lemma
-81 lig (li,aur-a) Liguleless (Exauriculum-a)
-87 Zeo1 (Knd) Zeocriton dwarf 1
-103 gpa (gp) Grandpa
-119 wst7 (rb) White streak 7 (Ribbon grass)
-151 trp (tr) Triple awned lemma
Chromosome 3H:
94 Rph7 (Pa7) Reaction to Puccinia hordei 7
70 ant17 Anthocyanin-less 17
40 xnt6 (xs) Xantha seedling 6 (Xantha seedling s)
39 btr1/btr2 (bt/bt2) Non-brittle rachis 1 and 2
37 lzd Lazy dwarf
26 Rrs1 Reaction to Rhynchosporium secalis 1
23 abo9 (an) Albino seedling 9 (Albino seedling n)
22 sca Short crooked awn
21 yst2 Yellow streak 2
20 alm (al) Albino lemma
17 dsp10 (lc) Dense spike 10 (Dense spike c)
14 abo6 (ac) Albino seedling 6 (Albino seedling c)
12 xnt3 (xc,vir-l) Xantha seedling 3 (Viridis seedling-l)
11 msg5 Male sterile genetic 5
10 ari-a Breviaristatum-a
9 yst1 Yellow streak 1
6 zeb1 (zb1) Zebra stripe 1
5 ert-c Erectoides-c
2 ert-ii Erectoides-ii
1 cer-zd Eceriferum-zd ++ ++ -
0 uzu (uz) Uzu (Semi brachytic)
wst1 (wst3) White streak 1
-2 Ryd2 Reaction to BYDV 2
-4 cer-r Eceriferum-r - + ++
-11 wst6 (wst,,j) White streak 6 (White streak j)
-12 cer-zn Eceriferum zn +/- ++ ++
-14 sld1 Slender dwarf 1
-30 vrs4 (v4,mul,int-e) Six-rowed spike 4 (Multiflorus, Intermedium spike-e)
-33 lnt1 (int-l) Low number of tillers 1 (Intermedium spike-l)
-35 gsh2 (gs2,cer-b) Glossy sheath 2 (Eceriferum-b) - - ++
-40 als Absence of low laterals
sdw1 (sdw) Semidwarf 1 (Denso)
-54 sdw2 (sdw-b) Semidwarf 2 (Semidwarf-b)
Pub Pubescent leaf blade
-85 cur2 (cu2) Curly 2
-90 Rph10 Reaction to Puccinia hordei 10
-93 fch2 (f2) Chlorina seedling 2
-101 eam10 (ea`sp`) Early maturity 10
-105 Est1 Esterase 1
Chromosome 4H:
61 fch9 (f9) Chlorina seedling 9
48 int-c (i,v5) Intermedium spike-c (Six-rowed spike 5)
glo-a Globosum-a
33 Kap (K) Hooded lemma
30 lbi2 (lb2,ert-i) Long basal rachis internode 2 (Erectoides-i)
msg24 Male sterile genetic 24
22 zeb2 (zb2,f10) Zebra stripe 2 (Chlorina seedling 10)
lgn3 (lg3) Light green 3
20 lgn4 (lg4) Light green 4
17 lks5 (lk5,ari-c) Short awn 5 (Breviaristatum-c)
16 eam9 (ea,,c) Early maturity 9
7 glf1 (gl1,cer-zh) Glossy leaf 1 (Eceriferum-zh) ++ ++ -
6 Mlg (Reg2) Reaction to Erysiphe graminis hordei 2
5 cer-zg Eceriferum-zg ++ ++ -
2 brh2 (br2,ari-l) Brachytic 2 (Breviaristatum-l)
0 glf3 (gl3,cer-j) Glossy leaf 3 (Eceriferum-j) ++ ++ -
-7 min1 (min) Semi-minute dwarf 1
blx4 (bl4) Non-blue (pink) aleurone xenia 4
-12 sid Single internode dwarf
blx3 (bl3) Non-blue aleurone xenia 3
-15 blx1 (bl) Non-blue aleurone xenia 1
-48 mlo (Reg6) Reaction to Erysiphe graminis hordei 6
-69 Hsh (Hs) Hairy leaf sheath
Hln (Hn) Hairs on lemma nerves
-75 sgh1 (sh1) Spring growth habit 1
-78 yhd1 (yh) Yellow head 1
-80 Bmy1 Beta-amylase 1
-87 Wsp3 Water-soluble protein 3
Chromosome 5H:
104 abo12 (alb,,o) Albino seedling 12 (Albino seedling o)
78 msg16 Male sterile genetic 16
66 ddt Reaction to DDT
61 dex1 Defective endosperm xenia 1
msg19 Male sterile genetic 19
50 nld Narrow leafed dwarf
48 fch6 (f6) Chlorina seedling 6
46 glo-b Globosum-b
43 cud1 (cud) Curly dwarf 1
42 lys3 (sex3) High lysine 3
30 mtt2 (mt2) Mottled leaf 2
27 fst1 (fs1) Fragile stem 1
22 blf1 (bb) Broad leaf 1
19 vrs2 (v2) Six-rowed spike 2
10 msg18 Male sterile genetic 18
5 wst2 White streak 2
lax-a Laxatum-a
3 com1 (bir1) Compositum 1 (Branching inflorescent rachilla 1)
2 ari-e (GPert) Breviaristatum-e (Golden Promise erectoides)
1 ert-g Erectoides-g
ert-n Erectoides-n
0 srh (s) Short rachilla hair
-4 cer-i Eceriferum-i - ++ ++
-5 cer-zj Eceriferum-zj ++ ++ -
-7 cer-zp Eceriferum-zp ++ ++ -
-11 lys1 High lysine 1
-16 cer-t Eceriferum-t +/- ++ ++
-18 dsk Dusky
-23 Ltc (Ltr) Large trichome
-26 var1 (va) Variegated 1
-27 cer-w Eceriferum-w - +/++ ++
-28 crm1 (cm) Cream seedling 1
-30 raw1 (r) Smooth awn 1
-36 msg7 Male sterile genetic 7
-39 msg8 Male sterile genetic 8
-46 Sgh2 (Sh2) Spring growth habit 2
-47 lbi1 (lb) Long basal rachis internode 1
-58 raw2 (r2) Smooth awn 2
-59 Rph12 Reaction to Puccinia hordei 12
var3 (va3) Variegated 3
Chromosome 6H:
39 abo15 (alb,,t) Albino seedling 15 (Albino seedling t)
30 nec3 Necrotic leaf spot 3
12 msg36 Male sterile genetic 36
6 nec2 Necrotic leaf spot 2
2 msg6 Male sterile genetic 6
1 eam7 (ea7) Early maturity 7
0 rob (o) Orange lemma
-1 sex1 Shrunken endosperm xenia 1
-2 gsh4 (gs4,cer-x) Glossy sheath 4 (Eceriferum-x) - - ++
-3 ant13 Anthocyanin-less 13
-4 cul2 (uc2) Uniculm 2
-6 fch11 (f11) Chlorina seedling 11
-8 mtt5 (mt,,f) Mottled leaf 5 (Mottled leaf f)
-9 abo14 (alb,,q) Albino seedling 14 (Albino seedling q)
-25 Amy1 Alpha-amylase 1
-27 mul2 Multiflorus 2
-29 cur3 (cu3) Curly 3
-32 lax-b Laxatum-b
-37 raw5 (r,,e) Smooth awn 5
-39 cur1 (cu1) Curly 1
-51 xnt5 (xn) Xantha seedling 5 (Xantha seedling n)
-53 Aat2 Aspartate aminotransferase 2
-61 Rph11 Reaction to Puccinia hordei 11
-63 lax-c Laxatum-c
-81 dsp9 (l9) Dense spike 9
ert-e Erectoides-e
Chromosome 7H:
70 Rpg1 (T) Reaction to Puccinia graminis 1
67 Run1 Reaction to Ustilago nuda 1
61 brh1 (br1,ari-i) Brachytic 1 (Breviaristatum-i)
52 fch12 (fc) Chlorina seedling 12 (Chlorina seedling c)
50 wax (wx) Waxy endosperm
48 gsh3 (cer-a) Glossy sheath 3 (Eceriferum-a) - - ++
43 fch5 (f5) Chlorina seedling 5
39 yvs2 (yc) Virescent seedling 2 (Yellow seedling c)
36 cer-ze (gl5) Eceriferum-ze (Glossy leaf 5) ++ ++ -
32 wnd Winding dwarf
rsm1 (sm) Reaction to BSMV 1
26 abo7 (ac2) Albino seedling 7 (Albino seedling c2)
23 ant1 (Rs) Anthocyanin-less 1 (Red stem)
22 ert-m Erectoides-m
18 ert-a Erectoides-a
13 ert-d Erectoides-d
12 fch8 (f8) Chlorina seedling 8
10 fst3 (fs3) Fragile stem 3
9 cer-f Eceriferum-f + + ++
8 dsp1 (l) Dense spike 1
7 msg14 Male sterile genetic 14
6 msg10 Male sterile genetic 10
4 sex6 Shrunken endosperm xenia 6
2 seg5 Shrunken endosperm 5
1 seg2 Shrunken endosperm 2
0 nud (n) Naked caryopsis
-5 fch4 (f4) Chlorina seedling 4
-6 Amy2 Alpha-amylase 2
-7 lks2 (lk2) Short awn 2
-8 ubs4 (u4,ari-d) Unbranched style 4 (Breviaristatum-d)
-11 blx2 (bl2) Non-blue aleurone xenia 2
-20 lbi3 (lb3) Long basal rachis internode 3
xnt4 (xc2) Xantha seedling 4 (Xantha seedling c2)
msg50 Male sterile genetic 50
-31 Rym2 (Ym2) Reaction to BaYMV 2
-35 seg4 Shrunken endosperm 4
-46 Xnt1 (Xa) Xantha seedling 1 (Xantha a)
-56 Rph3 (Pa3) Reaction to Puccinia hordei 3
xnt9 (xan,,i) Xantha seedling 9 (Xantha seedling i)
-80 seg1 Shrunken endosperm 1
-85 msg23 Male sterile genetic 23
-------------------------------------------------------------------------------
Other morphological markers not mapped to a relative position in the barley
genome, but tentatively associated with a specific chromosome.
-------------------------------------------------------------------------------
Recom. BGS Chr. Locus name or phenotype GSHO Reference
symbol no. loc. no.*
-------------------------------------------------------------------------------
CHROMOSOME 1H
cur5 (cu5) 231 1HS Curly 5 1710 Franckowiak, 1995
des6 215 1H Desynapsis 6 597 Hernandez-Soriano, 1973
dsp.ab 1H? Dense spike ab 1715 Franckowiak, 1995
dsp.ao 1HS Dense spike ao 1723 Franckowiak, 1995
glo-e 230 1HL Globosum-e 1755 Haeuser & Fischbeck, 1980
lax.ae 1HL Laxatum ae 1779 Franckowiak, 1995
msg20 375 1H Male sterile genetic 20 2372 Hockett & Eslick, 1971
mtt1 (mt) 521 1HS Mottled leaf 1 622 Kasha & Walker, 1960
pyr.aw 1HS Pyramidatum aw 2436 Franckowiak, 1995
Sil 228 1HS Subcrown internode length 1604 Franckowiak, 1995
yhd2 (yh2) 1H Yellow head 2 757 Eslick (unpubl.)
zeb3 (zb3) 223 1HL Zebra stripe 3 1451 Shahla & Tsuchiya, 1984
CHROMOSOME 2H
acr1 2HL Accordion rachis 1 1617 Franckowiak (unpubl.)
cer-v 414 2HS Eceriferum-v +/- ++ ++ 443 Sogaard, 1973
cer-yb 445 2HL Eceriferum-yb ++ ++ - 1535 Franckowiak, 1995
cur4 460 2HL Curly 4 1708 Haeuser & Fischbeck, 1979
(glo-d)
ert-j 90 2H Erectoides-j 484 Franckowiak, 1995
ert-q 91 2H Erectoides-q 1562 Franckowiak, 1995
ert-u 92 2H Erectoides-u 496 Franckowiak, 1995
ert-zd 93 2H Erectoides-zd 504 Franckowiak, 1995
des7 64 2H Desynapsis 7 598 Hernandez-Soriano, 1973
fch14 (f14) 87 2HL Chlorina seedling 14 1739 Franckowiak, 1995
gig1 463 2H? Gigas 1 1650 Shim et al., 1984
glo-c 72 2H Globosum-c 1329 Haeuser & Fischbeck, 1976
lks.m 2HL Short awn m 1782 Luna Villafana, 1995
msg35 498 2HL Male sterile genetic 35 2387 Franckowiak, 1995
msg48 520 2H Male sterile genetic 48 2401 Franckowiak, 1991
mss1 84 2H Midseason stripe 1 1404 Walker et al., 1963
Phr 2HL Phenol reaction Takeda & Zhang, 1995a
Rph1 (Pa) 70 2H Reaction to Puccinia 1313 Tuleen & McDonald, 1971
hordei 1
Rph15 2HL Reaction to Puccinia 1586 Chicaiza et al., 1996
hordei 15
sdw.aw 2HL Semidwarf aw 2446 Franckowiak, 1995
sld.d 2HS Slender dwarf d 2479 Franckowiak, 1995
yst4 85 2HL Yellow streak 4 2502 Faue et al., 1989
CHROMOSOME 3H
adp 3H? Awned palea 1618 Franckowiak (unpubl.)
brh.w 3HS Brachytic w 1687 Franckowiak, 1995
brh.ad 3HS Brachytic ad 1671 Franckowiak, 1995
cer-ya 444 3HS Eceriferum-ya ++ ++ - 1534 Franckowiak, 1995
cer-yd 447 3HS Eceriferum-yd - ++ ++ 1537 Franckowiak, 1995
cer-yh 451 3HS Eceriferum-yh - ++ ++ 1541 Franckowiak, 1995
des2 119 3H Desynapsis 2 593 Hernandez-Soriano, 1973
dsp.ar 3HS Dense spike ar 1726 Franckowiak, 1995
gra-a 131 3HL Granum-a 1757 Fischbeck & Haeuser, 1976
msg42 505 3H Male sterile genetic 42 2395 Franckowiak, 1991
nec4 138 3H Necrotic leaf spot 4 Fischbeck & Haeuser, 1976
nec5 139 3H Necrotic leaf spot 5 Fischbeck & Haeuser, 1976
Pyr.i 3HS Pyramidatum i 1582 Franckowiak, 1995
seg3 379 3H Shrunken endosperm 3 752 Jarvi & Eslick, 1975
seg6 396 3HL Shrunken endosperm 6 2467 Ramage & Scheuring, 1976
sex.j 3HL Shrunken endosperm 2471 Franckowiak, 1995
xenia j
sld.h 3HS Slender dwarf h 2483 Franckowiak, 1995
yst3 462 3HS Yellow streak 3 48 Franckowiak, 1995
CHROMOSOME 4H
brh.m 4H Brachytic m 1678 Franckowiak, 1995
flo-a 182 Extra floret-a 1741 Lundqvist (pers. com.)
frp 4HL Fluorescent reaction Takeda & Zhang, 1995b
- pink
msg25 166 4HL Male sterile genetic 25 744 Hockett & Eslick, 1971
Rym1 (Ym) 167 4HL Reaction to BaYMV 1 Takahashi et al., 1973
sld.e 4H Slender dwarf e 2480 Franckowiak, 1995
sld.f 4H Slender dwarf f 2481 Franckowiak, 1995
Zeo.h 4H Zeocriton h 1611 Franckowiak, 1995
CHROMOSOME 5H
ari-h 329 5HL Breviaristatum-h 1656 Franckowiak, 1995
blf2 (bb2) 337 5HL Broad leaf 2 1667 Franckowiak, 1995
brh.j 5HL Brachytic j 1675 Franckowiak, 1995
brh.s 5HL Brachytic s 1684 Franckowiak, 1995
cer-za 419 5HL Eceriferum-za ++ ++ - 1521 Franckowiak, 1995
cer-ye 448 5HL Eceriferum-ye ++ ++ - 1538 Franckowiak, 1995
crl (cl) 325 Curly lateral 1211 Walker et al., 1963
cst (cs) 5H Corn stalk Nilan, 1964
flo-b 327 5HL Extra floret-b 1742 Franckowiak, 1995
glo-f 342 5HL Globosum-f Haeuser et al., 1988
int-b 320 5HL Intermedium spike-b 1764 Franckowiak, 1995
Lfb 5HL Leafy bract 1577 Walker et al., 1963
mnd4 5HL Many-noded dwarf 4 1798 Franckowiak, 1995
msg29 466 5HL Male sterile genetic 29 2381 Franckowiak, 1995
msg49 335 5HL Male sterile genetic 49 2402 Franckowiak, 1991
pyr.af 5HL Pyramidatum af 1718 Franckowiak, 1995
raw6 (r6) 334 5HL Smooth awn 6 2437 Franckowiak, 1995
Rph2 (Pa2) 88 5HS Reaction to Puccinia 1593 Borovkova et al., 1997
hordei 2
Rph5 (Pa5) 122 5H Reaction to Puccinia 1597 Borovkova et al., 1997
hordei 5
sdw.ah 5HL Semidwarf ah 2451 Franckowiak, 1995
sex.i 5HL Shrunken endosperm 2470 Franckowiak, 1995
xenia i
Zeo.f 5HL Zeocriton f 1610 Franckowiak, 1995
CHROMOSOME 6H
ant21 6H Anthocyanin-less 21 1634 Falk, 1994
lys6 269 6H High lysine 6 1786 Jensen, 1979
msg28 465 6H Male sterile genetic 28 2380 Franckowiak, 1991
msg34 471 6H Male sterile genetic 34 2386 Franckowiak, 1991
msg39 502 6H Male sterile genetic 39 2391 Franckowiak, 1991
msg40 503 6H Male sterile genetic 40 2393 Franckowiak, 1991
CHROMOSOME 7H
ant18 7HL Anthocyanin-less 18 1630 Jende-Strid, 1993
ant22 7HL Anthocyanin-less 22 1635 Franckowiak, 1995
cer-k 405 7HS Eceriferum-k + ++ ++ 432 Franckowiak, 1995
cer-z 418 7HS Eceriferum-z - - ++ 447 Franckowiak, 1995
cer-yg 450 7HS Eceriferum-yg - - - 1540 Franckowiak, 1995
des1 12 7H Desynapsis 1 592 Hernandez-Soriano, 1973
des4 13 7H Desynapsis 4 595 Hernandez-Soriano, 1973
des5 14 7H Desynapsis 5 596 Hernandez-Soriano, 1973
mov5 (mo5) 7HS Multi-ovary 5 Tazhin, 1982
msg22 383 7H Male sterile genetic 22 741 Hockett & Eslick, 1971
msg26 395 7HS Male sterile genetic 26 745 Franckowiak, 1995
msg30 467 7HL Male sterile genetic 30 2382 Franckowiak, 1991
msg32 469 7H Male sterile genetic 32 2384 Hockett & Eslick, 1971
pbg 7H Pubescence of glume Hor, 1924
Rsg1 22 7H Reaction to Schizaphis 1317 Gardenshire et al., 1973
graminis 1
seg5 381 7HS Shrunken endosperm 5 754 Jarvi & Eslick, 1975
seg8 455 7H Shrunken endosperm 8 2469 Ramage & Crandall, 1981
smn1 (smn) 7HS Seminudoides 1 Franckowiak, 1995
smn2 7HS Seminudoides 2 Gymer, 1977
snb (sb) 26 7HS Subnodal bract 1217 Walker et al., 1963
-------------------------------------------------------------------------------
* GSHO numbers designate the seed stock in the Barley Genetics Stock
Collection at the USDA-ARS National Small Grains Germplasm Research
Facility, Aberdeen, Idaho, USA.