Cornell/CIBR sugarcane map
from Mark Sorrells, 10/31/94
Reference:
J.A.G. da Silva, R.J. Honeycutt, W. Burnquist, S.M. Al-Janabi, M.E.
Sorrells, S.D. Tanksley, B.W.S. Sobral. 1995. Saccharum spontaneum L.
'SES 208' genetic linkage map combining RFLP- and PCR-based markers.
Molecular Breeding 1: 165-179.
Mapping Population: 71 progeny derived from a cross of Saccharum spontaneum
`SES 208' (2n = 64) and its doubled haploid, `ADP85-0068'.
Mapping Criteria: Constructed by analysis of 442 single-dose (SD) polymorphisms
grouped using a minimum L.O.D. score of 4.0 and recombination fraction of
0.25M, and 41 Double-dose (DD) polymorphisms.
This map consists of 8 Homology Groups containing a total of 64 Linkage Groups.
Distances in centiMorgans using Kosambi mapping function.
Homology Group 1
Linkage Group 1 Distance, cM
CD0202B 0.0
CSB032B 2.1
CSR153C 4.2
SG012A 7.0
UMC027A 15.5
CD0089A 16.9
SG302B 19.7
K16.3s 26.8
SG168B 59.0
CSR012B 76.5
CSR120A 101.4
CSB031A 108.5
CSB031B 109.9
CSR065B 117.5
Linkage Group 3
B10.3s 0.0
SG293A 14.0
SG012B 20.1
CSB023B 37.3
CSB058F 50.9
Q5.1s 56.6
CSB036A 69.9
CSB058B 92.8
CSB069C 119.3
CSR049A 122.7
G4.2s 151.4
SG054A 162.9
BC0178C 173.9
SG305A 178.6
F4.1s 193.2
C10.4s 205.1
Linkage Group 5
CSB032A 0.0
SG322B 6.9
SG012C 12.4
I10.s 24.2
E18.1s 33.9
CSB058E 49.9
CSB058D 52.7
CSB058C 52.7
SG302A 59.8
Q15.3s 85.9
E20.2s 90.2
T20.2s 93.1
Linkage Group 6
G4.4s 0.0
CSB010B 12.3
SG322A 14.3
SG012D 15.7
CD0202A 21.5
Linkage Group 14
I5.1s 0.0
F20.1s 13.8
G4.5s 32.7
C7.4s 58.6
F4.3s 61.6
Q15.2s 68.7
A5.4s 77.3
E16.4s 93.9
Linkage Group 29
CSR065C 0.0
CSB031C 12.2
CSR012A 19.9
CSR120B 24.7
Linkage Group 33
CSB069D 0.0
UMC043B 8.6
F6.2s 18.6
Q11.1s 25.7
BC0178B 40.2
A15.4s 48.8
U14.1s 54.5
I19.6s 72.3
B1.3s 91.9
E20.1s 102.0
N10.3s 116.0
Linkage Group 40
C10.2s 0.0
B5.2s 16.0
D5.4s 29.0
CD1338A 36.1
CSR012C 45.2
CSR065A 65.1
A8.3s 75.7
O4.1s 92.8
Linkage Group 50
CSB069B 0.0
UMC043A 5.0
Linkage Group 64
BC0178A 0.0
C13.4s 13.0
Q8.1s 15.8
O5.1s 18.6
K16.2s 20.0
Homology Group 2
Linkage Group 2
CSC056B 0.0
B2.2s 13.8
C9.4s 18.0
CSC052C 22.2
CSR096A 26.4
SG442B 36.4
CSR128B 43.9
CD0665A 50.6
SG026A 60.7
Q8.2s 65.2
CSR-154A 82.6
SG099D 112.6
I19.5s 127.8
O16.3s 149.8
R16.1s 154.1
CD1345A 169.1
Linkage Group 13
N12.3s 0.0
CSR067A 15.7
A12.2s 24.8
A12.2a 31.1
CSR096C 40.5
CSC052B 41.9
CSR014B 41.9
SG370B 41.9
SG370C 43.3
CD1011B 52.1
Linkage Group 16
CSC030A 0.0
SG442A 19.7
CSC056A 33.3
CSR096B 41.9
CSC052D 44.7
CSR153A 47.5
CD1011A 59.0
A12.4a 72.0
B2.1s 74.8
C9.3s 87.0
Linkage Group 24
CSC041C 0.0
F4.2s 10.4
A10.4s 18.9
A10.3s 29.6
A15.2s 45.1
UMC031A 62.7
CSR146B 65.5
UMC015B 66.9
CSR160B 66.9
H13.2s 74.6
H4.2s 83.9
H14.6s 88.8
Linkage Group 35
CSB030A 0.0
CSR014C 2.9
Linkage Group 36
UMC044A 0.0
B20.4s 23.3
N3.2s 31.3
M18.5s 47.4
S9.1s 70.2
A1.1s 80.1
A1.2a 81.5
B20.1s 82.9
M18.4s 84.3
T20.4s 95.8
T14.2s 98.6
I7.1s 100.0
H9.3s 101.4
N4.1s 105.6
CSC024C 109.1
CSR160C 112.7
Linkage Group 42
CSR014A 0.0
C10.3s 7.2
J5.1s 10.0
R3.2s 17.1
Linkage Group 63
N11.2s 0.0
A5.2s 7.5
K20.1s 10.4
D11.2s 16.1
D11.1s 18.9
CSR146A 23.2
N3.1s 39.5
Homology Group 3
Linkage Group 4
C13.2s 0.0
N11.3s 6.3
SG029A 16.3
CSR065D 20.5
CSR132C 36.5
RZ421A 42.0
CD0066A 52.7
Linkage Group 8
L1.1s 0.0
UMC147B 11.2
SG155C 22.2
SG155A 26.5
L13.1s 50.9
SG029B 65.4
CSR132A 75.4
CSB023C 85.0
Q14.2s 102.6
CSR012D 112.6
CSC057A 118.8
SG192A 124.5
Linkage Group 9
U12.1s 0.0
L13.2s 16.2
UMC128A 30.7
SG030B 42.2
UMC147A 50.7
CD0087B 56.4
SG161A 69.4
K20.2s 83.5
A19.1a 88.9
Linkage Group 11
RZ017C 0.0
SG155D 2.9
SG030A 2.9
BC1051A 8.6
BC1643A 11.5
CSR145A 24.3
Linkage Group 12
SG030C 0.0
CD0087A 12.3
BC1643B 13.8
L1.2s 26.9
M10.3s 39.0
Linkage Group 17
O15.2s 0.0
CSR132E 17.9
CSC057B 41.9
CSB015A 47.3
CSR033B 50.7
CSB028B 57.8
BC1424A 62.0
CSB006B 66.3
RZ329A 69.1
SG212A 80.6
H11.3s 106.0
Linkage Group 21
J17.6s 0.0
A14.2s 30.6
A18.2s 35.3
C4.1a 38.6
CSR132D 53.8
RZ421B 58.2
CSR132B 64.1
Linkage Group 30
CSB015B 0.0
UMC076B 1.4
CSR033C 4.3
Linkage Group 41
M20.1s 0.0
BNL509B 6.3
UMC076C 9.2
Linkage Group 44
R3.1s 0.0
RZ612A 8.7
CSR033A 22.3
Linkage Group 56
A10.1s 0.0
RZ017A 7.4
Homology Group 4
Linkage Group 7
A12.1s 0.0
BC1707B 16.8
UMC130B 21.0
CSB007A 37.0
SG298B 59.5
CSR041B 64.7
CSR074B 75.4
BC1381C 97.4
Linkage Group 10
UMC139B 0.0
BC1381B 12.1
CSR074C 23.6
CSC049A 25.3
SG298A 32.1
U14.2s 51.1
CSR078A 78.2
CSB007D 88.9
UMC130A 103.4
CSR091B 112.0
UMC102A 122.0
T9.1s 128.4
H14.1s 134.8
Q5.2s 162.8
Linkage Group 20
K10.2s 0.0
UMC139A 10.8
R16.2s 24.4
CSC041A 43.5
CSR074A 49.3
CSB007B 74.8
M2.3s 80.5
P14.1s 90.8
Linkage Group 27
CSB023A 0.0
CSR091C 6.2
A8.5s 10.5
P9.1s 10.5
G12.3s 13.3
C9.2s 19.6
H14.4s 28.2
R16.3s 39.0
G16.1s 41.8
CSB007C 52.3
K10.5s 74.4
R14.3s 88.9
CSC049B 93.1
CSR041C 94.6
Linkage Group 34
O12.1s 0.0
C10.5s 22.5
H9.1s 30.2
BC1707A 39.5
UMC130C 43.7
CSB002A 50.4
I19.2s 63.1
P2.1s 86.5
Linkage Group 57
B11.2s 0.0
BC1381A 24.3
Homology Group 5
Linkage Group 18
CSR046A 0.0
CSR035B 3.6
CSC013B 8.0
B8.1s 11.5
CSC041B 29.2
CSR025A 42.3
CSR068A 46.9
CSR125A 64.3
J4.1s 69.1
SG406A 76.2
Linkage Group 19
CSR046B 0.0
CSR035A 6.0
CSR063D 9.9
K10.1s 19.9
T18.2s 40.5
N12.1s 45.0
R14.2s 50.7
F1.2s 53.5
CSR160A 57.7
D16.3s 67.2
F4.6s 71.9
G4.1s 74.7
P6.1s 85.0
Linkage Group 25
SG224A 0.0
J13.1s 14.5
I10.2s 27.5
CSR133B 37.5
CSR063A 41.7
UMC049A 53.1
U3.1s 66.2
G17.3s 72.6
L9.1s 79.0
B1.1s 86.1
A1.5s 90.6
BC1095A 109.6
Linkage Group 28
R19.1s 0.0
K10.4s 24.9
A7.3s 30.7
R2.1s 36.4
CSR085B 45.7
UMC047B 55.0
CSR133A 69.5
J17.3s 94.7
J17.4s 108.5
I8.2s 118.7
H11.1s 130.4
F4.5s 140.3
G4.3s 146.1
Linkage Group 31
CSR070B 0.0
B13.1s 8.5
J10.1s 19.3
CSR133C 29.2
CSR063C 42.1
Linkage Group 32
I5.4s 0.0
CSB012A 4.3
UMC004B 12.8
RZ004A 24.1
Linkage Group 38
UMC044B 0.0
I19.7s 30.1
A10.2s 44.6
B5.1s 50.4
CSR035C 52.1
CSR125B 53.5
L20.1s 62.9
N10.1s 75.8
CSC041A 102.2
Linkage Group 43
CSR063B 0.0
E16.3s 15.5
UMC049B 31.6
N2.1s 40.3
I11.1s 48.8
S5.1s 50.2
D5.2s 51.6
J13.2s 54.4
O7.2s 54.4
P2.2s 61.9
Linkage Group 46
UMC045A 0.0
I5.2s 11.5
I8.3s 18.6
K12.3s 36.6
Linkage Group 61
G17.1s 0.0
L20.2s 8.3
T16.2s 13.6
CSR085A 23.5
Homology Group 6
Linkage Group 23
CD1056A 0.0
CSB022B 12.4
RZ004B 35.3
CSR048A 48.1
CD1380C 64.0
CSR008C 68.6
SG426B 70.1
Linkage Group 26
CSR008D 0.0
BC1716B 4.2
CD1380B 4.2
A1.2s 12.7
L19.1s 19.8
B15.2s 28.5
Linkage Group 37
CSR029B 0.0
A15.1s 7.1
CD1056B 21.8
Linkage Group 48
N15.2s 0.0
CSR008B 5.7
CD1380A 15.8
Linkage Group 54
O15.1s 0.0
CSC024B 18.5
Linkage Group 58
K11.2s 0.0
M18.6s 17.0
M16.4s 21.5
O1.2s 27.2
CD1380D 36.0
Linkage Group 49
CSR29A 0.0
CSC42A.1 6.6
Linkage Group 53
G12.1s 0.0
I19.3s 21.6
CD0665B 28.2
M18.3s 32.5
A8.7s 52.8
CSB022C 63.3
J17.1s 78.5
Homology Group 7
Linkage Group 45
CSC037A.1 0.0
H2.3s 0.0
SG026B.1 15.5
Linkage Group 51
CSC037A.2 0.0
SG026B.2 15.5
Homology Group 8
Linkage Group 15
CSC005A 0.0
SG004A 10.7
BNL911B 21.1
CSR015A 30.8
SG099A 47.3
CSC037B 84.0
Linkage Group 22
H4.1s 0.0
CSC005B 14.1
CSC024A 22.3
CD1345C 24.5
SG099B 48.6
Homology Unassigned
Linkage Group 39
E16.2s 0.0
U14.3s 11.8
Linkage Group 47
B10.2s 0.0
P9.2s 24.1
Linkage Group 52
C7.6s 0.0
O16.1s 4.4
Linkage Group 55
N5.1s 0.0
O18.1s 8.5
CDO385B 18.8
Linkage Group 59
M2.2s 0.0
SG140A 17.0
Linkage Group 60
E9.1s 0.0
E9.2s 0.0
Linkage Group 62
G12.2s 0.0
SG021A 11.8
K11.1s 33.4