Stripe rust QTL from Jambuthenne et al. (2022) Mining the Vavilov wheat diversity panel for new sources of adult plant resistance to stripe rust. TAG 135:1355 DOI 10.1007/s00122-022-04037-8.

Forty-seven independent QTL were mapped on the IWGSC v1 assembly with DArT markers, 14 of which overlapped with previously described genes. These will be added to the Strip Rust track for the IWGSC v1 browser in progress.

GWAS QTL results in the publications below will soon be aligned on the 2018 IWGSC Chinese Spring v1 wheat genome browser. In preparation for that track these QTL were curated as QTL records in the GrainGenes database with links to significant markers, associated traits, Gene Ontology links, etc. As always in GrainGenes, all significant data is linked from the reference record. See below for the upcoming browser track in progress and please do not hesitate to recommend additions to this track,

Quality Traits

Released A. sativa ssp. nuda cv. Sanfensan, A. insularis and A. longiglumis Genome Browsers and BLAST databases.

Related publication (Peng et al., 2022): Nature "Reference genome assemblies reveal the origin and evolution of allohexaploid oat"

We have created two ATAC-seq tracks for leaf and root for the IWGSC Chinese Spring v1 browser.

The data were provided by the Dubcovsky Lab. The data were submitted as part of the preprint article, which is submitted to a journal.

The tracks can be visualized by clicking here.

The abstract book for the International Barley Genetics Symposium (IBGS) 2022 that took place in Riga, Latvia is available on the "Barley Boulevard" page under the "Abstracts/Short Talks/Posters from Barley Conferences" section.

Barley Boulevard: https://wheat.pw.usda.gov/GG3/barley_blvd
Direct link to the IBGS 2022 Abstract book: https://wheat.pw.usda.gov/GG3/sites/default/files/IBGS_13_2022_Abstracts...

Relased Illumina iSelect 15K SNP markers aligned to Durum Wheat and Zavitan v1 Wheat.

Publicaion: Frontiers in Genetics, Taranto et al., Front. Genet., 2020


Click below to view the track in the respective genome browser:

Relased marker tracks for Wheat Chinese Spring (IWGSC v1), Barley Morex v3, and PepsiCo OT3098 v2

Markers from genotyping protocols loaded in The Triticeae Toolbox (2022 update).

Blake, V., Birkett, C.L., Matthews, D.E., Hane, D., Bradbury, P., Jannink, J. 2016. The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding. The Plant Genome. doi: 10.3835/PlantGenome2014.12.0099.

Annual Wheat Newsletter Volume 68 (2022) is now available at https://wheat.pw.usda.gov/ggpages/awn/.

The volume, as well as previous volumes, can also be accessed at https://krex.k-state.edu/dspace/browse?type=title by searching for 'Annual Wheat Newsletter'.

Jon Raupp, Editor.
Wheat Genetics Research Center
Kansas State University

GrainGenes Released 15 Wheat 10+ Protein BLAST databases.

Related publication (Walkowiak et al., 2020): Nature "Multiple wheat genomes reveal global variation in modern breeding"

Data source: EnsemblPlants

These Wheat 10+ BLAST databases are available on our BLAST tool. Or,